diff --git a/doc/src/compute_smd_contact_radius.txt b/doc/src/compute_smd_contact_radius.txt index a2cb378be0..69fe453343 100644 --- a/doc/src/compute_smd_contact_radius.txt +++ b/doc/src/compute_smd_contact_radius.txt @@ -27,7 +27,7 @@ contact radius is used only to prevent particles belonging to different physical bodies from penetrating each other. It is used by the contact pair styles, e.g., smd/hertz and smd/tri_surface. -See "this PDF guide"_USER/smd/SMD_LAMMPS_userguide.pdf to using Smooth +See "this PDF guide"_PDF/SMD_LAMMPS_userguide.pdf to using Smooth Mach Dynamics in LAMMPS. The value of the contact radius will be 0.0 for particles not in the diff --git a/doc/src/compute_smd_damage.txt b/doc/src/compute_smd_damage.txt index 30ca114fb3..b6c75a3b20 100644 --- a/doc/src/compute_smd_damage.txt +++ b/doc/src/compute_smd_damage.txt @@ -24,7 +24,7 @@ compute 1 all smd/damage :pre Define a computation that calculates the damage status of SPH particles according to the damage model which is defined via the SMD SPH pair styles, e.g., the maximum plastic strain failure criterion. -See "this PDF guide"_USER/smd/SMD_LAMMPS_userguide.pdf to use Smooth Mach Dynamics in LAMMPS. +See "this PDF guide"_PDF/SMD_LAMMPS_userguide.pdf to use Smooth Mach Dynamics in LAMMPS. [Output Info:] diff --git a/doc/src/compute_smd_hourglass_error.txt b/doc/src/compute_smd_hourglass_error.txt index 36978cc9ef..a15b79e64e 100644 --- a/doc/src/compute_smd_hourglass_error.txt +++ b/doc/src/compute_smd_hourglass_error.txt @@ -32,7 +32,7 @@ configuration. This compute is only really useful for debugging the hourglass control mechanim which is part of the Total-Lagrangian SPH pair style. -See "this PDF guide"_USER/smd/SMD_LAMMPS_userguide.pdf to use Smooth +See "this PDF guide"_PDF/SMD_LAMMPS_userguide.pdf to use Smooth Mach Dynamics in LAMMPS. [Output Info:] diff --git a/doc/src/compute_smd_internal_energy.txt b/doc/src/compute_smd_internal_energy.txt index f556b79c3e..bc6f9e0f20 100644 --- a/doc/src/compute_smd_internal_energy.txt +++ b/doc/src/compute_smd_internal_energy.txt @@ -24,7 +24,7 @@ compute 1 all smd/internal/energy :pre Define a computation which outputs the per-particle enthalpy, i.e., the sum of potential energy and heat. -See "this PDF guide"_USER/smd/SMD_LAMMPS_userguide.pdf to use Smooth +See "this PDF guide"_PDF/SMD_LAMMPS_userguide.pdf to use Smooth Mach Dynamics in LAMMPS. [Output Info:] diff --git a/doc/src/compute_smd_plastic_strain.txt b/doc/src/compute_smd_plastic_strain.txt index c149bc96c7..af5b164453 100644 --- a/doc/src/compute_smd_plastic_strain.txt +++ b/doc/src/compute_smd_plastic_strain.txt @@ -25,7 +25,7 @@ Define a computation that outputs the equivalent plastic strain per particle. This command is only meaningful if a material model with plasticity is defined. -See "this PDF guide"_USER/smd/SMD_LAMMPS_userguide.pdf to use Smooth +See "this PDF guide"_PDF/SMD_LAMMPS_userguide.pdf to use Smooth Mach Dynamics in LAMMPS. [Output Info:] diff --git a/doc/src/compute_smd_plastic_strain_rate.txt b/doc/src/compute_smd_plastic_strain_rate.txt index 2b222b9a78..ba7b3176db 100644 --- a/doc/src/compute_smd_plastic_strain_rate.txt +++ b/doc/src/compute_smd_plastic_strain_rate.txt @@ -25,7 +25,7 @@ Define a computation that outputs the time rate of the equivalent plastic strain. This command is only meaningful if a material model with plasticity is defined. -See "this PDF guide"_USER/smd/SMD_LAMMPS_userguide.pdf to use Smooth +See "this PDF guide"_PDF/SMD_LAMMPS_userguide.pdf to use Smooth Mach Dynamics in LAMMPS. [Output Info:] diff --git a/doc/src/compute_smd_rho.txt b/doc/src/compute_smd_rho.txt index 1d4ca6329f..ae50526725 100644 --- a/doc/src/compute_smd_rho.txt +++ b/doc/src/compute_smd_rho.txt @@ -26,7 +26,7 @@ The mass density is the mass of a particle which is constant during the course of a simulation, divided by its volume, which can change due to mechanical deformation. -See "this PDF guide"_USER/smd/SMD_LAMMPS_userguide.pdf to use Smooth +See "this PDF guide"_PDF/SMD_LAMMPS_userguide.pdf to use Smooth Mach Dynamics in LAMMPS. [Output info:] diff --git a/doc/src/compute_smd_tlsph_defgrad.txt b/doc/src/compute_smd_tlsph_defgrad.txt index 86351e42f7..68b5dffa1c 100644 --- a/doc/src/compute_smd_tlsph_defgrad.txt +++ b/doc/src/compute_smd_tlsph_defgrad.txt @@ -25,7 +25,7 @@ Define a computation that calculates the deformation gradient. It is only meaningful for particles which interact according to the Total-Lagrangian SPH pair style. -See "this PDF guide"_USER/smd/SMD_LAMMPS_userguide.pdf to use Smooth +See "this PDF guide"_PDF/SMD_LAMMPS_userguide.pdf to use Smooth Mach Dynamics in LAMMPS. [Output info:] diff --git a/doc/src/compute_smd_tlsph_dt.txt b/doc/src/compute_smd_tlsph_dt.txt index 1f1aa5bcfc..560a9b6fd8 100644 --- a/doc/src/compute_smd_tlsph_dt.txt +++ b/doc/src/compute_smd_tlsph_dt.txt @@ -30,7 +30,7 @@ time step. This calculation is performed automatically in the relevant SPH pair styles and this compute only serves to make the stable time increment accessible for output purposes. -See "this PDF guide"_USER/smd/SMD_LAMMPS_userguide.pdf to using Smooth +See "this PDF guide"_PDF/SMD_LAMMPS_userguide.pdf to using Smooth Mach Dynamics in LAMMPS. [Output info:] diff --git a/doc/src/compute_smd_tlsph_num_neighs.txt b/doc/src/compute_smd_tlsph_num_neighs.txt index 7c64342012..0420d1903d 100644 --- a/doc/src/compute_smd_tlsph_num_neighs.txt +++ b/doc/src/compute_smd_tlsph_num_neighs.txt @@ -25,7 +25,7 @@ Define a computation that calculates the number of particles inside of the smoothing kernel radius for particles interacting via the Total-Lagrangian SPH pair style. -See "this PDF guide"_USER/smd/SMD_LAMMPS_userguide.pdf to using Smooth +See "this PDF guide"_PDF/SMD_LAMMPS_userguide.pdf to using Smooth Mach Dynamics in LAMMPS. [Output info:] diff --git a/doc/src/compute_smd_tlsph_shape.txt b/doc/src/compute_smd_tlsph_shape.txt index d95d95acf1..02bd0c50dd 100644 --- a/doc/src/compute_smd_tlsph_shape.txt +++ b/doc/src/compute_smd_tlsph_shape.txt @@ -26,7 +26,7 @@ associated with a particle as a rotated ellipsoid. It is only meaningful for particles which interact according to the Total-Lagrangian SPH pair style. -See "this PDF guide"_USER/smd/SMD_LAMMPS_userguide.pdf to use Smooth +See "this PDF guide"_PDF/SMD_LAMMPS_userguide.pdf to use Smooth Mach Dynamics in LAMMPS. [Output info:] diff --git a/doc/src/compute_smd_tlsph_strain.txt b/doc/src/compute_smd_tlsph_strain.txt index 68d446b3be..f25d1b77db 100644 --- a/doc/src/compute_smd_tlsph_strain.txt +++ b/doc/src/compute_smd_tlsph_strain.txt @@ -24,7 +24,7 @@ compute 1 all smd/tlsph/strain :pre Define a computation that calculates the Green-Lagrange strain tensor for particles interacting via the Total-Lagrangian SPH pair style. -See "this PDF guide"_USER/smd/SMD_LAMMPS_userguide.pdf to using Smooth +See "this PDF guide"_PDF/SMD_LAMMPS_userguide.pdf to using Smooth Mach Dynamics in LAMMPS. [Output info:] diff --git a/doc/src/compute_smd_tlsph_strain_rate.txt b/doc/src/compute_smd_tlsph_strain_rate.txt index 88224ea0e3..13ca57ac4d 100644 --- a/doc/src/compute_smd_tlsph_strain_rate.txt +++ b/doc/src/compute_smd_tlsph_strain_rate.txt @@ -24,7 +24,7 @@ compute 1 all smd/tlsph/strain/rate :pre Define a computation that calculates the rate of the strain tensor for particles interacting via the Total-Lagrangian SPH pair style. -See "this PDF guide"_USER/smd/SMD_LAMMPS_userguide.pdf to using Smooth +See "this PDF guide"_PDF/SMD_LAMMPS_userguide.pdf to using Smooth Mach Dynamics in LAMMPS. [Output info:] diff --git a/doc/src/compute_smd_tlsph_stress.txt b/doc/src/compute_smd_tlsph_stress.txt index 0929e5ea07..5d707d4c2f 100644 --- a/doc/src/compute_smd_tlsph_stress.txt +++ b/doc/src/compute_smd_tlsph_stress.txt @@ -24,7 +24,7 @@ compute 1 all smd/tlsph/stress :pre Define a computation that outputs the Cauchy stress tensor for particles interacting via the Total-Lagrangian SPH pair style. -See "this PDF guide"_USER/smd/SMD_LAMMPS_userguide.pdf to using Smooth +See "this PDF guide"_PDF/SMD_LAMMPS_userguide.pdf to using Smooth Mach Dynamics in LAMMPS. [Output info:] diff --git a/doc/src/compute_smd_triangle_mesh_vertices.txt b/doc/src/compute_smd_triangle_mesh_vertices.txt index 1cec0090b5..5b0f0afc4c 100644 --- a/doc/src/compute_smd_triangle_mesh_vertices.txt +++ b/doc/src/compute_smd_triangle_mesh_vertices.txt @@ -25,7 +25,7 @@ Define a computation that returns the coordinates of the vertices corresponding to the triangle-elements of a mesh created by the "fix smd/wall_surface"_fix_smd_wall_surface.html. -See "this PDF guide"_USER/smd/SMD_LAMMPS_userguide.pdf to using Smooth +See "this PDF guide"_PDF/SMD_LAMMPS_userguide.pdf to using Smooth Mach Dynamics in LAMMPS. [Output info:] diff --git a/doc/src/compute_smd_ulsph_num_neighs.txt b/doc/src/compute_smd_ulsph_num_neighs.txt index 1e08e0cca4..95af1b2163 100644 --- a/doc/src/compute_smd_ulsph_num_neighs.txt +++ b/doc/src/compute_smd_ulsph_num_neighs.txt @@ -25,7 +25,7 @@ Define a computation that returns the number of neighbor particles inside of the smoothing kernel radius for particles interacting via the updated Lagrangian SPH pair style. -See "this PDF guide"_USER/smd/SMD_LAMMPS_userguide.pdf to using Smooth +See "this PDF guide"_PDF/SMD_LAMMPS_userguide.pdf to using Smooth Mach Dynamics in LAMMPS. [Output info:] diff --git a/doc/src/compute_smd_ulsph_strain.txt b/doc/src/compute_smd_ulsph_strain.txt index 1eb6bc7c2b..b7d425b12b 100644 --- a/doc/src/compute_smd_ulsph_strain.txt +++ b/doc/src/compute_smd_ulsph_strain.txt @@ -24,7 +24,7 @@ compute 1 all smd/ulsph/strain :pre Define a computation that outputs the logarithmic strain tensor. for particles interacting via the updated Lagrangian SPH pair style. -See "this PDF guide"_USER/smd/SMD_LAMMPS_userguide.pdf to using Smooth +See "this PDF guide"_PDF/SMD_LAMMPS_userguide.pdf to using Smooth Mach Dynamics in LAMMPS. [Output info:] diff --git a/doc/src/compute_smd_ulsph_strain_rate.txt b/doc/src/compute_smd_ulsph_strain_rate.txt index eb9318e072..e2c349c265 100644 --- a/doc/src/compute_smd_ulsph_strain_rate.txt +++ b/doc/src/compute_smd_ulsph_strain_rate.txt @@ -25,7 +25,7 @@ Define a computation that outputs the rate of the logarithmic strain tensor for particles interacting via the updated Lagrangian SPH pair style. -See "this PDF guide"_USER/smd/SMD_LAMMPS_userguide.pdf to using Smooth +See "this PDF guide"_PDF/SMD_LAMMPS_userguide.pdf to using Smooth Mach Dynamics in LAMMPS. [Output info:] diff --git a/doc/src/compute_smd_ulsph_stress.txt b/doc/src/compute_smd_ulsph_stress.txt index 115a4d14bb..47f903d3b8 100644 --- a/doc/src/compute_smd_ulsph_stress.txt +++ b/doc/src/compute_smd_ulsph_stress.txt @@ -23,7 +23,7 @@ compute 1 all smd/ulsph/stress :pre Define a computation that outputs the Cauchy stress tensor. -See "this PDF guide"_USER/smd/SMD_LAMMPS_userguide.pdf to using Smooth +See "this PDF guide"_PDF/SMD_LAMMPS_userguide.pdf to using Smooth Mach Dynamics in LAMMPS. [Output info:] diff --git a/doc/src/compute_smd_vol.txt b/doc/src/compute_smd_vol.txt index 239ab1a1d5..fc736a5bf5 100644 --- a/doc/src/compute_smd_vol.txt +++ b/doc/src/compute_smd_vol.txt @@ -24,7 +24,7 @@ compute 1 all smd/vol :pre Define a computation that provides the per-particle volume and the sum of the per-particle volumes of the group for which the fix is defined. -See "this PDF guide"_USER/smd/SMD_LAMMPS_userguide.pdf to using Smooth +See "this PDF guide"_PDF/SMD_LAMMPS_userguide.pdf to using Smooth Mach Dynamics in LAMMPS. [Output info:] diff --git a/doc/src/fix_smd_adjust_dt.txt b/doc/src/fix_smd_adjust_dt.txt index 04a0a7becd..86b7363300 100644 --- a/doc/src/fix_smd_adjust_dt.txt +++ b/doc/src/fix_smd_adjust_dt.txt @@ -36,7 +36,7 @@ stable maximum time step. This fix inquires the minimum stable time increment across all particles contained in the group for which this fix is defined. An additional safety factor {s_fact} is applied to the time increment. -See "this PDF guide"_USER/smd/SMD_LAMMPS_userguide.pdf to use Smooth Mach Dynamics in LAMMPS. +See "this PDF guide"_PDF/SMD_LAMMPS_userguide.pdf to use Smooth Mach Dynamics in LAMMPS. [Restart, fix_modify, output, run start/stop, minimize info:] diff --git a/doc/src/fix_smd_integrate_tlsph.txt b/doc/src/fix_smd_integrate_tlsph.txt index 8948acbb3b..24d319bdb9 100644 --- a/doc/src/fix_smd_integrate_tlsph.txt +++ b/doc/src/fix_smd_integrate_tlsph.txt @@ -32,7 +32,7 @@ fix 1 all smd/integrate_tlsph limit_velocity 1000 :pre The fix performs explicit time integration for particles which interact according with the Total-Lagrangian SPH pair style. -See "this PDF guide"_USER/smd/SMD_LAMMPS_userguide.pdf to using Smooth Mach Dynamics in LAMMPS. +See "this PDF guide"_PDF/SMD_LAMMPS_userguide.pdf to using Smooth Mach Dynamics in LAMMPS. The {limit_velocity} keyword will control the velocity, scaling the norm of the velocity vector to max_vel in case it exceeds this velocity limit. diff --git a/doc/src/fix_smd_integrate_ulsph.txt b/doc/src/fix_smd_integrate_ulsph.txt index dfbdf51cce..0dfb9451de 100644 --- a/doc/src/fix_smd_integrate_ulsph.txt +++ b/doc/src/fix_smd_integrate_ulsph.txt @@ -34,7 +34,7 @@ fix 1 all smd/integrate_ulsph limit_velocity 1000 :pre [Description:] The fix performs explicit time integration for particles which interact with the updated Lagrangian SPH pair style. -See "this PDF guide"_USER/smd/SMD_LAMMPS_userguide.pdf to using Smooth Mach Dynamics in LAMMPS. +See "this PDF guide"_PDF/SMD_LAMMPS_userguide.pdf to using Smooth Mach Dynamics in LAMMPS. The {adjust_radius} keyword activates dynamic adjustment of the per-particle SPH smoothing kernel radius such that the number of neighbors per particles remains within the interval {min_nn} to {max_nn}. The parameter {adjust_radius_factor} determines the amount of adjustment per timestep. Typical values are diff --git a/doc/src/fix_smd_move_triangulated_surface.txt b/doc/src/fix_smd_move_triangulated_surface.txt index 9fa6947ff5..2cba001267 100644 --- a/doc/src/fix_smd_move_triangulated_surface.txt +++ b/doc/src/fix_smd_move_triangulated_surface.txt @@ -55,7 +55,7 @@ specified. This style also sets the velocity of each particle to (omega cross Rperp) where omega is its angular velocity around the rotation axis and Rperp is a perpendicular vector from the rotation axis to the particle. -See "this PDF guide"_USER/smd/SMD_LAMMPS_userguide.pdf to using Smooth Mach Dynamics in LAMMPS. +See "this PDF guide"_PDF/SMD_LAMMPS_userguide.pdf to using Smooth Mach Dynamics in LAMMPS. [Restart, fix_modify, output, run start/stop, minimize info:] diff --git a/doc/src/fix_smd_wall_surface.txt b/doc/src/fix_smd_wall_surface.txt index 19f0f3d80b..4ea592be1b 100644 --- a/doc/src/fix_smd_wall_surface.txt +++ b/doc/src/fix_smd_wall_surface.txt @@ -37,7 +37,7 @@ It is possible to move the triangulated surface via the "smd/move_tri_surf"_fix_ Immediately after a .STL file has been read, the simulation needs to be run for 0 timesteps in order to properly register the new particles in the system. See the "funnel_flow" example in the USER-SMD examples directory. -See "this PDF guide"_USER/smd/SMD_LAMMPS_userguide.pdf to use Smooth Mach Dynamics in LAMMPS. +See "this PDF guide"_PDF/SMD_LAMMPS_userguide.pdf to use Smooth Mach Dynamics in LAMMPS. [Restart, fix_modify, output, run start/stop, minimize info:] diff --git a/doc/src/pair_smd_tlsph.txt b/doc/src/pair_smd_tlsph.txt index a81d2e25c1..f73acf74ee 100644 --- a/doc/src/pair_smd_tlsph.txt +++ b/doc/src/pair_smd_tlsph.txt @@ -39,7 +39,7 @@ invocation of the {tlsph} for a solid body would consist of an equation of state the pressure (the diagonal components of the stress tensor), and a material model to compute shear stresses (the off-diagonal components of the stress tensor). Damage and failure models can also be added. -Please see the "SMD user guide"_USER/smd/SMD_LAMMPS_userguide.pdf for a complete listing of the possible keywords and material models. +Please see the "SMD user guide"_PDF/SMD_LAMMPS_userguide.pdf for a complete listing of the possible keywords and material models. :line diff --git a/doc/src/pair_smd_ulsph.txt b/doc/src/pair_smd_ulsph.txt index d4c9fc41fa..b9efeb8fc3 100644 --- a/doc/src/pair_smd_ulsph.txt +++ b/doc/src/pair_smd_ulsph.txt @@ -43,7 +43,7 @@ stresses (the off-diagonal components of the stress tensor). Note that the use of *GRADIENT_CORRECTION can lead to severe numerical instabilities. For a general fluid simulation, *NO_GRADIENT_CORRECTION is recommended. -Please see the "SMD user guide"_USER/smd/SMD_LAMMPS_userguide.pdf for a complete listing of the possible keywords and material models. +Please see the "SMD user guide"_PDF/SMD_LAMMPS_userguide.pdf for a complete listing of the possible keywords and material models. :line