From 04b9d5ebc267ebea433c83022c7c21d696a6d1dc Mon Sep 17 00:00:00 2001 From: sjplimp Date: Thu, 31 Jan 2008 18:14:21 +0000 Subject: [PATCH] git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@1444 f3b2605a-c512-4ea7-a41b-209d697bcdaa --- doc/Section_errors.html | 10 ++++++++++ doc/Section_errors.txt | 10 ++++++++++ doc/angle_class2.html | 6 +++--- doc/angle_class2.txt | 6 +++--- 4 files changed, 26 insertions(+), 6 deletions(-) diff --git a/doc/Section_errors.html b/doc/Section_errors.html index 9c1bf3d170..1ddc37bb18 100644 --- a/doc/Section_errors.html +++ b/doc/Section_errors.html @@ -3587,6 +3587,11 @@ read_restart, or create_box command.
+
Dihedral problem: %d %d %d %d %d %d + +
Conformation of the 4 listed dihedral atoms is extreme; you may want +to check your simulation geometry. +
Dump dcd/xtc timestamp may be wrong with fix dt/reset
If the fix changes the timestep, the dump dcd file will not @@ -3619,6 +3624,11 @@ the other fixes have made their adjustments. computes a temperature on a different group of atoms than the fix itself operates on. This is probably not what you want to do. +
Improper problem: %d %d %d %d %d %d + +
Conformation of the 4 listed improper atoms is extreme; you may want +to check your simulation geometry. +
Less insertions than requested
Less atom insertions occurred on this timestep due to the fix insert diff --git a/doc/Section_errors.txt b/doc/Section_errors.txt index 4a926afcf4..45fc45691a 100644 --- a/doc/Section_errors.txt +++ b/doc/Section_errors.txt @@ -3584,6 +3584,11 @@ Warnings: :h4,link(warn) :dlb +{Dihedral problem: %d %d %d %d %d %d} :dt + +Conformation of the 4 listed dihedral atoms is extreme; you may want +to check your simulation geometry. :dd + {Dump dcd/xtc timestamp may be wrong with fix dt/reset} :dt If the fix changes the timestep, the dump dcd file will not @@ -3616,6 +3621,11 @@ The fix_modify command is specifying a temperature computation that computes a temperature on a different group of atoms than the fix itself operates on. This is probably not what you want to do. :dd +{Improper problem: %d %d %d %d %d %d} :dt + +Conformation of the 4 listed improper atoms is extreme; you may want +to check your simulation geometry. :dd + {Less insertions than requested} :dt Less atom insertions occurred on this timestep due to the fix insert diff --git a/doc/angle_class2.html b/doc/angle_class2.html index 229867ed0b..18f9024ce9 100644 --- a/doc/angle_class2.html +++ b/doc/angle_class2.html @@ -37,11 +37,11 @@ the input script or data file. These are the 4 coefficients:

  • theta0 (degrees)
  • K2 (energy/radian^2) -
  • K3 (energy/radian^2) -
  • K4 (energy/radian^2) +
  • K3 (energy/radian^3) +
  • K4 (energy/radian^4)

Theta0 is specified in degrees, but LAMMPS converts it to radians -internally; hence the units of K are in energy/radian^2. +internally; hence the units of the various K are in per-radian.

Coefficients for the Ebb and Eba formulas can only be specified in the data file. diff --git a/doc/angle_class2.txt b/doc/angle_class2.txt index 6d343f324c..3839723381 100644 --- a/doc/angle_class2.txt +++ b/doc/angle_class2.txt @@ -34,11 +34,11 @@ the input script or data file. These are the 4 coefficients: theta0 (degrees) K2 (energy/radian^2) -K3 (energy/radian^2) -K4 (energy/radian^2) :ul +K3 (energy/radian^3) +K4 (energy/radian^4) :ul Theta0 is specified in degrees, but LAMMPS converts it to radians -internally; hence the units of K are in energy/radian^2. +internally; hence the units of the various K are in per-radian. Coefficients for the Ebb and Eba formulas can only be specified in the data file.