git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14868 f3b2605a-c512-4ea7-a41b-209d697bcdaa

This commit is contained in:
sjplimp
2016-04-22 17:54:49 +00:00
parent 184d5dc0f0
commit 08271a0200
12 changed files with 272 additions and 39 deletions

View File

@ -17,17 +17,21 @@
#include <math.h>
#include <stdlib.h>
#include <string.h>
#include "angle_zero.h"
#include "atom.h"
#include "force.h"
#include "comm.h"
#include "math_const.h"
#include "memory.h"
#include "error.h"
using namespace LAMMPS_NS;
using namespace MathConst;
/* ---------------------------------------------------------------------- */
AngleZero::AngleZero(LAMMPS *lmp) : Angle(lmp) {}
AngleZero::AngleZero(LAMMPS *lmp) : Angle(lmp), coeffflag(1) {}
/* ---------------------------------------------------------------------- */
@ -35,6 +39,7 @@ AngleZero::~AngleZero()
{
if (allocated && !copymode) {
memory->destroy(setflag);
memory->destroy(theta0);
}
}
@ -48,11 +53,25 @@ void AngleZero::compute(int eflag, int vflag)
/* ---------------------------------------------------------------------- */
void AngleZero::settings(int narg, char **arg)
{
if ((narg != 0) && (narg != 1))
error->all(FLERR,"Illegal angle_style command");
if (narg == 1) {
if (strcmp("nocoeff",arg[0]) == 0) coeffflag=0;
else error->all(FLERR,"Illegal angle_style command");
}
}
/* ---------------------------------------------------------------------- */
void AngleZero::allocate()
{
allocated = 1;
int n = atom->nangletypes;
memory->create(theta0,n+1,"angle:theta0");
memory->create(setflag,n+1,"angle:setflag");
for (int i = 1; i <= n; i++) setflag[i] = 0;
}
@ -63,15 +82,24 @@ void AngleZero::allocate()
void AngleZero::coeff(int narg, char **arg)
{
if (narg != 1) error->all(FLERR,"Incorrect args for angle coefficients");
if ((narg < 1) || (coeffflag && narg > 2))
error->all(FLERR,"Incorrect args for angle coefficients");
if (!allocated) allocate();
int ilo,ihi;
force->bounds(arg[0],atom->nangletypes,ilo,ihi);
double theta0_one = 0.0;
if (coeffflag && (narg == 2))
theta0_one = force->numeric(FLERR,arg[1]);
// convert theta0 from degrees to radians
int count = 0;
for (int i = ilo; i <= ihi; i++) {
setflag[i] = 1;
theta0[i] = theta0_one/180.0 * MY_PI;
count++;
}
@ -82,14 +110,16 @@ void AngleZero::coeff(int narg, char **arg)
double AngleZero::equilibrium_angle(int i)
{
return 0.0;
return theta0[i];
}
/* ----------------------------------------------------------------------
proc 0 writes out coeffs to restart file
------------------------------------------------------------------------- */
void AngleZero::write_restart(FILE *fp) {}
void AngleZero::write_restart(FILE *fp) {
fwrite(&theta0[1],sizeof(double),atom->nangletypes,fp);
}
/* ----------------------------------------------------------------------
proc 0 reads coeffs from restart file, bcasts them
@ -98,8 +128,23 @@ void AngleZero::write_restart(FILE *fp) {}
void AngleZero::read_restart(FILE *fp)
{
allocate();
if (comm->me == 0) {
fread(&theta0[1],sizeof(double),atom->nangletypes,fp);
}
MPI_Bcast(&theta0[1],atom->nangletypes,MPI_DOUBLE,0,world);
for (int i = 1; i <= atom->nangletypes; i++) setflag[i] = 1;
}
/* ----------------------------------------------------------------------
proc 0 writes to data file
------------------------------------------------------------------------- */
void AngleZero::write_data(FILE *fp)
{
for (int i = 1; i <= atom->nangletypes; i++)
fprintf(fp,"%d %g\n",i,theta0[i]/MY_PI*180.0);
}
/* ---------------------------------------------------------------------- */