git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@2496 f3b2605a-c512-4ea7-a41b-209d697bcdaa

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sjplimp
2009-01-19 17:17:01 +00:00
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commit 09e7a411da
16 changed files with 492 additions and 158 deletions

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@ -27,46 +27,58 @@ mass 2* 62.5
<P><B>Description:</B>
</P>
<P>Set the mass for all atoms of one or more atom types. Mass values can
also be set in the <A HREF = "read_data.html">read_data</A> data file. See the
<A HREF = "units.html">units</A> command for what mass units to use.
also be set in the <A HREF = "read_data.html">read_data</A> data file using the
"Masses" keyword. See the <A HREF = "units.html">units</A> command for what mass
units to use.
</P>
<P>Most atom styles require per-type masses to be specified. One
exception is <A HREF = "atom_style.html">atom_style granular</A> or <A HREF = "atom_style.html">atom_style
peri</A>, where masses are defined for individual atoms,
not types. These are defined in the file read by the
<A HREF = "read_data.html">read_data</A> command, or set to default values by the
<A HREF = "create_atoms.html">create_atoms</A> command, or set to new values by the
<A HREF = "set.html">set density</A> command. Also note that <A HREF = "pair_eam.html">pair_style
eam</A> defines the masses of atom types in the EAM
potential file.
<P>The I index can be specified in one of two ways. An explicit numeric
value can be used, as in the 1st example above. Or a wild-card
asterisk can be used to set the mass for multiple atom types. This
takes the form "*" or "*n" or "n*" or "m*n". If N = the number of
atom types, then an asterisk with no numeric values means all types
from 1 to N. A leading asterisk means all types from 1 to n
(inclusive). A trailing asterisk means all types from n to N
(inclusive). A middle asterisk means all types from m to n
(inclusive).
</P>
<P>I can be specified in one of two ways. An explicit numeric value can
be used, as in the 1st example above. Or a wild-card asterisk can be
used to set the mass for multiple atom types. This takes the form "*"
or "*n" or "n*" or "m*n". If N = the number of atom types, then an
asterisk with no numeric values means all types from 1 to N. A leading
asterisk means all types from 1 to n (inclusive). A trailing asterisk
means all types from n to N (inclusive). A middle asterisk means all
types from m to n (inclusive).
</P>
<P>A line in a data file that specifies mass uses the same format as the
arguments of the mass command in an input script, except that no
wild-card asterisk can be used. For example, under the "Masses"
section of a data file, the line that corresponds to the 1st example
above would be listed as
<P>A line in a <A HREF = "read_data.html">data file</A> that follows the "Masses"
keyword specifies mass using the same format as the arguments of the
mass command in an input script, except that no wild-card asterisk can
be used. For example, under the "Masses" section of a data file, the
line that corresponds to the 1st example above would be listed as
</P>
<PRE>1 1.0
</PRE>
<P>Note that the mass command can only be used if the <A HREF = "atom_style.html">atom
style</A> requires per-type atom mass to be set, which
most do. Exceptions are <A HREF = "atom_style.html">atom_style granular</A> or
<A HREF = "atom_style.html">atom_style peri</A>, which require mass to be set for
individual particles, not types. Per-atom masses are defined in the
data file read by the <A HREF = "read_data.html">read_data</A> command, or set to
default values by the <A HREF = "create_atoms.html">create_atoms</A> command, or set
to new values by the <A HREF = "set.html">set density</A> command.
</P>
<P>Also note that <A HREF = "pair_eam.html">pair_style eam</A> defines the masses of
atom types in the EAM potential file, in which case the mass command
is normally not used.
</P>
<P>If you define a <A HREF = "atom_style.html">hybrid atom style</A> which includes one
(or more) sub-styles which require per-type mass and one (or more)
sub-styles which require per-atom mass, then you must define both.
However, the per-type mass is ignored in this case; only the per-atom
mass is used.
</P>
<P><B>Restrictions:</B>
</P>
<P>This command must come after the simulation box is defined by a
<A HREF = "read_data.html">read_data</A>, <A HREF = "read_restart.html">read_restart</A>, or
<A HREF = "create_box.html">create_box</A> command.
</P>
<P>All masses must be defined before a simulation is run (if the atom
style requires masses be set). They must also all be defined before a
<A HREF = "velocity.html">velocity</A> or <A HREF = "fix_shake.html">fix shake</A> command is
used.
<P>All masses must be defined before a simulation is run. They must also
all be defined before a <A HREF = "velocity.html">velocity</A> or <A HREF = "fix_shake.html">fix
shake</A> command is used.
</P>
<P>The mass assigned to any type or atom must be > 0.0.
</P>
<P><B>Related commands:</B> none
</P>