From 0c081ffa4b9b87d280f085c7c6d3bc9fa6810df7 Mon Sep 17 00:00:00 2001 From: sjplimp Date: Thu, 24 Jul 2008 19:43:24 +0000 Subject: [PATCH] git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@1964 f3b2605a-c512-4ea7-a41b-209d697bcdaa --- doc/Section_commands.html | 12 ++++++------ doc/Section_commands.txt | 2 ++ doc/pair_soft.html | 6 +++--- doc/pair_soft.txt | 6 +++--- doc/units.html | 2 +- doc/units.txt | 2 +- 6 files changed, 16 insertions(+), 14 deletions(-) diff --git a/doc/Section_commands.html b/doc/Section_commands.html index 443f726722..80ac76b039 100644 --- a/doc/Section_commands.html +++ b/doc/Section_commands.html @@ -341,10 +341,10 @@ descriptions of each style or click on the style itself for a full description:

- - - - + + +
centro/atomcoord/atomdisplace/atomerotate/asphereerotate/spheregroup/group
keke/atompepe/atompressurereduce
stress/atomtemptemp/aspheretemp/comtemp/deformtemp/partial
temp/ramptemp/regiontemp/sphere +
centro/atomcoord/atomdamage/atomdisplace/atomerotate/asphereerotate/sphere
group/groupkeke/atompepe/atompressure
reducestress/atomtemptemp/aspheretemp/comtemp/deform
temp/partialtemp/ramptemp/regiontemp/sphere

These are compute styles contributed by users, which can be used if @@ -372,8 +372,8 @@ full description: lj/cut/coul/cutlj/cut/coul/debyelj/cut/coul/longlj/cut/coul/long/tip4p lj/expandlj/gromacslj/gromacs/coul/gromacslj/smooth lubricatemeammorsemorse/opt -resquaredsoftswtable -tersoffyukawa +resquaredperi/pmbsoftsw +tabletersoffyukawa

These are pair styles contributed by users, which can be used if diff --git a/doc/Section_commands.txt b/doc/Section_commands.txt index 80d41f440e..01c1f40476 100644 --- a/doc/Section_commands.txt +++ b/doc/Section_commands.txt @@ -450,6 +450,7 @@ description: "centro/atom"_compute_centro_atom.html, "coord/atom"_compute_coord_atom.html, +"damage/atom"_compute_damage_atom.html, "displace/atom"_compute_displace_atom.html, "erotate/asphere"_compute_erotate_asphere.html, "erotate/sphere"_compute_erotate_sphere.html, @@ -526,6 +527,7 @@ full description: "morse"_pair_morse.html, "morse/opt"_pair_morse.html, "resquared"_pair_resquared.html, +"peri/pmb"_pair_peri_pmb.html, "soft"_pair_soft.html, "sw"_pair_sw.html, "table"_pair_table.html, diff --git a/doc/pair_soft.html b/doc/pair_soft.html index d9de404e1a..bcacfea72f 100644 --- a/doc/pair_soft.html +++ b/doc/pair_soft.html @@ -36,9 +36,9 @@ how to make the ramping take place across multiple runs. Rc is the cutoff. See the fix nve/limit command for another way to push apart overlapping atoms.

-

The following coefficients must be defined for each pair of atoms -types via the pair_coeff command as in the examples -above, or in the data file or restart files read by the +

The following coefficients must be defined for each pair of atom types +via the pair_coeff command as in the examples above, +or in the data file or restart files read by the read_data or read_restart commands, or by mixing as described below:

diff --git a/doc/pair_soft.txt b/doc/pair_soft.txt index 6572583d59..a5be96d086 100644 --- a/doc/pair_soft.txt +++ b/doc/pair_soft.txt @@ -33,9 +33,9 @@ how to make the ramping take place across multiple runs. Rc is the cutoff. See the "fix nve/limit"_fix_nve_limit.html command for another way to push apart overlapping atoms. -The following coefficients must be defined for each pair of atoms -types via the "pair_coeff"_pair_coeff.html command as in the examples -above, or in the data file or restart files read by the +The following coefficients must be defined for each pair of atom types +via the "pair_coeff"_pair_coeff.html command as in the examples above, +or in the data file or restart files read by the "read_data"_read_data.html or "read_restart"_read_restart.html commands, or by mixing as described below: diff --git a/doc/units.html b/doc/units.html index 3ad21d5813..a071e0fd78 100644 --- a/doc/units.html +++ b/doc/units.html @@ -113,7 +113,7 @@ results from a unitless LJ simulation into physical quantities.
  • pressure = dyne/cm^2 or barye = 1.0e-6 bars
  • viscosity = Poise
  • charge = statcoulombs or esu -
  • dipole = debye +
  • dipole = statcoul-cm = 10^18 debye
  • electric field = statvolt/cm or dyne/esu

    The units command also sets the timestep size and neighbor skin diff --git a/doc/units.txt b/doc/units.txt index a84a681d6f..0e4fa140d4 100644 --- a/doc/units.txt +++ b/doc/units.txt @@ -110,7 +110,7 @@ temperature = degrees K pressure = dyne/cm^2 or barye = 1.0e-6 bars viscosity = Poise charge = statcoulombs or esu -dipole = debye +dipole = statcoul-cm = 10^18 debye electric field = statvolt/cm or dyne/esu :ul The units command also sets the timestep size and neighbor skin