diff --git a/doc/fix.html b/doc/fix.html index 7af7753e3c..c6d1437fa2 100644 --- a/doc/fix.html +++ b/doc/fix.html @@ -73,60 +73,60 @@ for individual fixes for info on which ones can be restarted.
Here is an alphabetic list of fix styles available in LAMMPS:
-There are also additional fix styles submitted by users which are included in the LAMMPS distribution. The list of these with links to diff --git a/doc/fix.txt b/doc/fix.txt index 70347560fd..dff6e087e9 100644 --- a/doc/fix.txt +++ b/doc/fix.txt @@ -70,68 +70,68 @@ for individual fixes for info on which ones can be restarted. Here is an alphabetic list of fix styles available in LAMMPS: -"fix addforce"_fix_addforce.html - add a force to each atom -"fix aveforce"_fix_aveforce.html - add an averaged force to each atom -"fix ave/atom"_fix_ave_atom.html - compute per-atom time-averaged quantities -"fix ave/spatial"_fix_ave_spatial.html - output per-atom quantities by layer -"fix ave/time"_fix_ave_time.html - output time-averaged compute quantities -"fix com"_fix_com.html - compute a center-of-mass -"fix deform"_fix_deform.html - change the simulation box size/shape -"fix deposit"_fix_deposit.html - add new atoms above a surface -"fix drag"_fix_drag.html - drag atoms towards a defined coordinate -"fix efield"_fix_efield.html - impose electric field on system -"fix enforce2d"_fix_enforce2d.html - zero out z-dimension velocity and force -"fix freeze"_fix_freeze.html - freeze atoms in a granular simulation -"fix gran/diag"_fix_gran_diag.html - compute granular diagnostics -"fix gravity"_fix_gravity.html - add gravity to atoms in a granular simulation -"fix gyration"_fix_gyration.html - compute radius of gyration -"fix heat"_fix_gyration.html - add/subtract momentum-conserving heat -"fix indent"_fix_indent.html - impose force due to an indenter -"fix langevin"_fix_langevin.html - Langevin temperature control -"fix lineforce"_fix_lineforce.html - constrain atoms to move in a line -"fix msd"_fix_msd.html - compute mean-squared displacement \ +"addforce"_fix_addforce.html - add a force to each atom +"aveforce"_fix_aveforce.html - add an averaged force to each atom +"ave/atom"_fix_ave_atom.html - compute per-atom time-averaged quantities +"ave/spatial"_fix_ave_spatial.html - output per-atom quantities by layer +"ave/time"_fix_ave_time.html - output time-averaged compute quantities +"com"_fix_com.html - compute a center-of-mass +"deform"_fix_deform.html - change the simulation box size/shape +"deposit"_fix_deposit.html - add new atoms above a surface +"drag"_fix_drag.html - drag atoms towards a defined coordinate +"efield"_fix_efield.html - impose electric field on system +"enforce2d"_fix_enforce2d.html - zero out z-dimension velocity and force +"freeze"_fix_freeze.html - freeze atoms in a granular simulation +"gran/diag"_fix_gran_diag.html - compute granular diagnostics +"gravity"_fix_gravity.html - add gravity to atoms in a granular simulation +"gyration"_fix_gyration.html - compute radius of gyration +"heat"_fix_gyration.html - add/subtract momentum-conserving heat +"indent"_fix_indent.html - impose force due to an indenter +"langevin"_fix_langevin.html - Langevin temperature control +"lineforce"_fix_lineforce.html - constrain atoms to move in a line +"msd"_fix_msd.html - compute mean-squared displacement \ (i.e. diffusion coefficient) -"fix momentum"_fix_momentum.html - zero the linear and/or angular momentum \ +"momentum"_fix_momentum.html - zero the linear and/or angular momentum \ of a group of atoms -"fix nph"_fix_nph.html - constant NPH time integration via Nose/Hoover -"fix npt"_fix_npt.html - constant NPT time integration via Nose/Hoover -"fix npt/asphere"_fix_npt_asphere.html - NPT for aspherical particles -"fix nve"_fix_nve.html - constant NVE time integration -"fix nve/asphere"_fix_nve_asphere.html - NVT for aspherical particles -"fix nve/dipole"_fix_nve_dipole.html - NVE for point dipolar particles -"fix nve/gran"_fix_nve_gran.html - NVE for granular particles -"fix nve/limit"_fix_nve_limit.html - NVE with limited step length -"fix nve/noforce"_fix_nve_noforce.html - NVE without forces (v only) -"fix nvt"_fix_nvt.html - constant NVT time integration via Nose/Hoover -"fix nvt/asphere"_fix_nvt_asphere.html - NVT for aspherical particles -"fix nvt/sllod"_fix_nvt_sllod.html - NVT for NEMD with SLLOD equations -"fix orient/fcc"_fix_orient_fcc.html - add grain boundary migration force -"fix planeforce"_fix_planeforce.html - constrain atoms to move in a plane -"fix poems"_fix_poems.html - constrain clusters of atoms to move \ +"nph"_fix_nph.html - constant NPH time integration via Nose/Hoover +"npt"_fix_npt.html - constant NPT time integration via Nose/Hoover +"npt/asphere"_fix_npt_asphere.html - NPT for aspherical particles +"nve"_fix_nve.html - constant NVE time integration +"nve/asphere"_fix_nve_asphere.html - NVT for aspherical particles +"nve/dipole"_fix_nve_dipole.html - NVE for point dipolar particles +"nve/gran"_fix_nve_gran.html - NVE for granular particles +"nve/limit"_fix_nve_limit.html - NVE with limited step length +"nve/noforce"_fix_nve_noforce.html - NVE without forces (v only) +"nvt"_fix_nvt.html - constant NVT time integration via Nose/Hoover +"nvt/asphere"_fix_nvt_asphere.html - NVT for aspherical particles +"nvt/sllod"_fix_nvt_sllod.html - NVT for NEMD with SLLOD equations +"orient/fcc"_fix_orient_fcc.html - add grain boundary migration force +"planeforce"_fix_planeforce.html - constrain atoms to move in a plane +"poems"_fix_poems.html - constrain clusters of atoms to move \ as coupled rigid bodies -"fix pour"_fix_pour.html - pour new atoms into a granular simulation domain -"fix print"_fix_print.html - print text and variables during a simulation -"fix rdf"_fix_rdf.html - compute radial distribution functions -"fix recenter"_fix_recenter.html - constrain the center-of-mass position \ +"pour"_fix_pour.html - pour new atoms into a granular simulation domain +"print"_fix_print.html - print text and variables during a simulation +"rdf"_fix_rdf.html - compute radial distribution functions +"recenter"_fix_recenter.html - constrain the center-of-mass position \ of a group of atoms -"fix rigid"_fix_rigid.html - constrain one or more clusters of atoms to \ +"rigid"_fix_rigid.html - constrain one or more clusters of atoms to \ move as a rigid body -"fix setforce"_fix_setforce.html - set the force on each atom -"fix shake"_fix_shake.html - SHAKE constraints on bonds and/or angles -"fix spring"_fix_spring.html - apply harmonic spring force to group of atoms -"fix spring/rg"_fix_spring_rg.html - spring on radius of gyration of \ +"setforce"_fix_setforce.html - set the force on each atom +"shake"_fix_shake.html - SHAKE constraints on bonds and/or angles +"spring"_fix_spring.html - apply harmonic spring force to group of atoms +"spring/rg"_fix_spring_rg.html - spring on radius of gyration of \ group of atoms -"fix spring/self"_fix_spring_self.html - spring from each atom to its origin -"fix temp/rescale"_fix_temp_rescale.html - temperature control by \ +"spring/self"_fix_spring_self.html - spring from each atom to its origin +"temp/rescale"_fix_temp_rescale.html - temperature control by \ velocity rescaling -"fix tmd"_fix_tmd.html - guide a group of atoms to a new configuration -"fix viscous"_fix_viscous.html - viscous damping for granular simulations -"fix wall/gran"_fix_wall_gran.html - frictional wall(s) for \ +"tmd"_fix_tmd.html - guide a group of atoms to a new configuration +"viscous"_fix_viscous.html - viscous damping for granular simulations +"wall/gran"_fix_wall_gran.html - frictional wall(s) for \ granular simulations -"fix wall/lj126"_fix_wall_lj126.html - Lennard-Jones 12-6 wall -"fix wall/lj93"_fix_wall_lj93.html - Lennard-Jones 9-3 wall -"fix wall/reflect"_fix_wall_reflect.html - reflecting wall(s) -"fix wiggle"_fix_wiggle.html - oscillate walls and frozen atoms :ul +"wall/lj126"_fix_wall_lj126.html - Lennard-Jones 12-6 wall +"wall/lj93"_fix_wall_lj93.html - Lennard-Jones 9-3 wall +"wall/reflect"_fix_wall_reflect.html - reflecting wall(s) +"wiggle"_fix_wiggle.html - oscillate walls and frozen atoms :ul There are also additional fix styles submitted by users which are included in the LAMMPS distribution. The list of these with links to