git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@4713 f3b2605a-c512-4ea7-a41b-209d697bcdaa

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sjplimp
2010-09-06 19:28:56 +00:00
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LAMMPS (10 Sep 2010)
Processor partition = 0
# Parallel replica dynamics model for a single vacancy in bulk Si
# events occur when a neighboring atom diffuses to the vacant site
# run this on multiple partitions as
# mpirun -np 4 lmp_g++ -partition 4x1 -in in.prd
units metal
atom_style atomic
atom_modify map array
boundary p p p
atom_modify sort 0 0.0
# temperature
variable t equal 1800.0
# coordination number cutoff
variable r equal 2.835
# minimization parameters
variable etol equal 1.0e-5
variable ftol equal 1.0e-5
variable maxiter equal 100
variable maxeval equal 100
variable dmax equal 1.0e-1
# diamond unit cell
variable a equal 5.431
lattice custom $a a1 1.0 0.0 0.0 a2 0.0 1.0 0.0 a3 0.0 0.0 1.0 basis 0.0 0.0 0.0 basis 0.0 0.5 0.5 basis 0.5 0.0 0.5 basis 0.5 0.5 0.0 basis 0.25 0.25 0.25 basis 0.25 0.75 0.75 basis 0.75 0.25 0.75 basis 0.75 0.75 0.25
lattice custom 5.431 a1 1.0 0.0 0.0 a2 0.0 1.0 0.0 a3 0.0 0.0 1.0 basis 0.0 0.0 0.0 basis 0.0 0.5 0.5 basis 0.5 0.0 0.5 basis 0.5 0.5 0.0 basis 0.25 0.25 0.25 basis 0.25 0.75 0.75 basis 0.75 0.25 0.75 basis 0.75 0.75 0.25
Lattice spacing in x,y,z = 5.431 5.431 5.431
region myreg block 0 4 0 4 0 4
create_box 1 myreg
Created orthogonal box = (0 0 0) to (21.724 21.724 21.724)
1 by 1 by 1 processor grid
create_atoms 1 region myreg
Created 512 atoms
mass 1 28.06
group Si type 1
512 atoms in group Si
velocity all create $t 5287287 mom yes rot yes dist gaussian
velocity all create 1800 5287287 mom yes rot yes dist gaussian
# make a vacancy
group del id 300
1 atoms in group del
delete_atoms group del
Deleted 1 atoms, new total = 511
pair_style sw
pair_coeff * * Si.sw Si
thermo 10
fix 1 all nvt temp $t $t 0.1
fix 1 all nvt temp 1800 $t 0.1
fix 1 all nvt temp 1800 1800 0.1
timestep 1.0e-3
neighbor 1.0 bin
neigh_modify every 1 delay 10 check yes
# equilibrate
run 1000
Memory usage per processor = 1.70934 Mbytes
Step Temp E_pair E_mol TotEng Press
0 1802.5039 -2211.666 0 -2092.8401 12351.692
10 996.01982 -2158.3093 0 -2092.649 14285.475
20 590.09928 -2131.1531 0 -2092.2521 12113.964
30 1033.01 -2159.2522 0 -2091.1534 6860.4116
40 724.76581 -2137.281 0 -2089.5025 5999.4372
50 489.66604 -2120.8082 0 -2088.5281 6403.4234
60 960.70653 -2150.7394 0 -2087.407 5687.324
70 908.41498 -2145.7665 0 -2085.8813 8220.9655
80 796.82286 -2137.1227 0 -2084.5941 11307.153
90 1245.9045 -2164.9841 0 -2082.8507 11282.071
100 1083.0647 -2152.0805 0 -2080.682 12015.018
110 846.80459 -2134.8152 0 -2078.9916 11904.208
120 1130.5577 -2151.6282 0 -2077.0988 9631.0553
130 1011.5223 -2141.5579 0 -2074.8757 9674.727
140 828.13015 -2127.6781 0 -2073.0856 10663.754
150 1213.6842 -2151.0205 0 -2071.0112 9358.162
160 1118.1701 -2142.223 0 -2068.5102 9705.042
170 815.94964 -2120.3781 0 -2066.5885 11111.781
180 1149.9499 -2140.3762 0 -2064.5684 10362.874
190 1265.3227 -2145.3133 0 -2061.8998 10208.885
200 967.96035 -2123.4032 0 -2059.5927 11429.676
210 1154.8198 -2133.5775 0 -2057.4487 10697.231
220 1309.6664 -2141.0968 0 -2054.7601 10123.484
230 1123.114 -2126.2814 0 -2052.2427 11010.813
240 1262.1761 -2133.0492 0 -2049.8432 10358.728
250 1387.1979 -2138.5224 0 -2047.0746 9224.1203
260 1099.3995 -2117.0127 0 -2044.5373 9902.009
270 1119.6867 -2116.1281 0 -2042.3154 9925.7178
280 1412.0178 -2132.6875 0 -2039.6036 8270.5884
290 1321.0773 -2123.8202 0 -2036.7313 8809.0223
300 1216.0708 -2114.3828 0 -2034.2162 9035.0512
310 1359.9122 -2121.2409 0 -2031.5918 7895.5635
320 1322.8642 -2116.0313 0 -2028.8245 8661.9299
330 1272.4262 -2110.1033 0 -2026.2215 10341.489
340 1451.8803 -2119.1983 0 -2023.4865 10343.627
350 1488.8525 -2118.6967 0 -2020.5476 10786.017
360 1330.5957 -2105.5746 0 -2017.8582 11501.105
370 1452.1996 -2110.9637 0 -2015.2308 11534.951
380 1598.8893 -2117.7127 0 -2012.3096 12209.282
390 1593.9074 -2114.5133 0 -2009.4386 13050.071
400 1580.9099 -2110.9274 0 -2006.7096 12007.149
410 1499.3026 -2102.9454 0 -2004.1074 10088.553
420 1368.9435 -2091.8877 0 -2001.6433 8465.3083
430 1297.2041 -2084.7532 0 -1999.2381 7269.5758
440 1450.1063 -2092.2353 0 -1996.6405 7033.8027
450 1534.8081 -2094.9394 0 -1993.7608 9081.5997
460 1556.639 -2093.5424 0 -1990.9246 12400.015
470 1803.1464 -2106.8774 0 -1988.0092 14192.515
480 1865.4976 -2108.05 0 -1985.0714 16740.251
490 1809.642 -2101.8102 0 -1982.5137 17670.617
500 1875.0318 -2103.7815 0 -1980.1744 15726.048
510 1835.5401 -2099.0223 0 -1978.0186 13590.87
520 1592.2743 -2081.0889 0 -1976.1219 12889.185
530 1621.098 -2081.1646 0 -1974.2975 12097.358
540 1787.4042 -2090.0335 0 -1972.203 11006.55
550 1629.769 -2077.5584 0 -1970.1196 11828.612
560 1633.9967 -2075.8478 0 -1968.1303 13013.747
570 1867.8884 -2089.0683 0 -1965.9321 12589.17
580 1897.3799 -2088.7925 0 -1963.7122 12142.767
590 1675.1213 -2072.2289 0 -1961.8004 12668.905
600 1852.5707 -2082.1073 0 -1959.9809 11872.082
610 1895.1634 -2083.0113 0 -1958.0771 12732.408
620 1759.7637 -2072.4168 0 -1956.4085 14720.014
630 1867.9005 -2077.9673 0 -1954.8303 15446.507
640 1882.4501 -2077.3643 0 -1953.2682 16189.673
650 1830.0215 -2072.5142 0 -1951.8743 15952.621
660 1989.6605 -2081.7336 0 -1950.5699 14441.731
670 2019.3348 -2082.5674 0 -1949.4475 13093.568
680 1806.7881 -2067.7448 0 -1948.6365 13695.415
690 1860.9944 -2070.6335 0 -1947.9518 13711.769
700 2035.4273 -2081.5085 0 -1947.3277 13969.607
710 1924.1115 -2073.7877 0 -1946.9451 14669.272
720 1925.0897 -2073.7075 0 -1946.8005 14665.913
730 1979.7127 -2077.3504 0 -1946.8425 14625.754
740 1932.6041 -2074.5197 0 -1947.1173 15051.1
750 1873.6645 -2071.0745 0 -1947.5575 14804.579
760 1916.3833 -2074.4703 0 -1948.1372 13868.322
770 1893.2199 -2073.6709 0 -1948.8647 14320.209
780 1868.0258 -2072.8444 0 -1949.6991 13913.255
790 1903.3142 -2076.1305 0 -1950.6589 13542.781
800 1852.3079 -2073.8193 0 -1951.7102 13663.021
810 1874.015 -2076.3795 0 -1952.8394 12583.329
820 1897.7242 -2079.181 0 -1954.0779 12629.436
830 1810.9511 -2074.7734 0 -1955.3907 13791.194
840 1751.9411 -2072.1105 0 -1956.6178 14705.479
850 1904.2872 -2083.4009 0 -1957.8652 14745.454
860 1916.5803 -2085.6068 0 -1959.2607 14829.039
870 1838.661 -2081.9371 0 -1960.7276 14932.396
880 1847.5879 -2084.017 0 -1962.219 14581.23
890 1850.4293 -2085.7191 0 -1963.7338 13109.312
900 1822.6233 -2085.4213 0 -1965.2691 13769.397
910 1786.0307 -2084.4806 0 -1966.7407 13450.462
920 1823.0469 -2088.3777 0 -1968.1976 12242.2
930 1731.0515 -2083.7104 0 -1969.5949 11686.755
940 1635.923 -2078.6209 0 -1970.7765 11861.596
950 1731.8445 -2085.9611 0 -1971.7933 11269.332
960 1735.3582 -2087.1207 0 -1972.7212 11587.883
970 1672.4435 -2083.7706 0 -1973.5187 12217.898
980 1703.4917 -2086.4744 0 -1974.1757 12431.952
990 1733.7211 -2089.007 0 -1974.7155 12829.553
1000 1764.9513 -2091.5262 0 -1975.1759 13614.2
Loop time of 3.86644 on 1 procs for 1000 steps with 511 atoms
Pair time (%) = 3.77969 (97.7564)
Neigh time (%) = 0.0423875 (1.09629)
Comm time (%) = 0.0136006 (0.35176)
Outpt time (%) = 0.00130391 (0.0337239)
Other time (%) = 0.0294545 (0.761799)
Nlocal: 511 ave 511 max 511 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Nghost: 1017 ave 1017 max 1017 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Neighs: 0 ave 0 max 0 min
Histogram: 1 0 0 0 0 0 0 0 0 0
FullNghs: 13440 ave 13440 max 13440 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Total # of neighbors = 13440
Ave neighs/atom = 26.3014
Neighbor list builds = 44
Dangerous builds = 0
# only output atoms near vacancy
compute coord all coord/atom $r
compute coord all coord/atom 2.835
dump events all custom 1 dump.prd id type x y z
dump_modify events thresh c_coord != 4
compute patom all pe/atom
compute pe all reduce sum c_patom
compute satom all stress/atom
compute str all reduce sum c_satom[1] c_satom[2] c_satom[3]
variable press equal (c_str[1]+c_str[2]+c_str[3])/(3*vol)
thermo_style custom step temp pe c_pe press v_press
compute 1 all event/displace 0.5
prd 2000 100 10 10 100 1 54985 temp $t min ${etol} ${ftol} ${maxiter} ${maxeval} vel all uniform
prd 2000 100 10 10 100 1 54985 temp 1800 min ${etol} ${ftol} ${maxiter} ${maxeval} vel all uniform
prd 2000 100 10 10 100 1 54985 temp 1800 min 1e-05 ${ftol} ${maxiter} ${maxeval} vel all uniform
prd 2000 100 10 10 100 1 54985 temp 1800 min 1e-05 1e-05 ${maxiter} ${maxeval} vel all uniform
prd 2000 100 10 10 100 1 54985 temp 1800 min 1e-05 1e-05 100 ${maxeval} vel all uniform
prd 2000 100 10 10 100 1 54985 temp 1800 min 1e-05 1e-05 100 100 vel all uniform
Memory usage per processor = 3.42595 Mbytes
Step Temp PotEng pe Press press
1000 1764.9513 -2091.5262 -2091.5262 13614.2 -13614.2
1010 1764.9513 -2212.5976 -2212.5976 8682.8748 -8682.8748
1018 1764.9513 -2213.2997 -2213.2997 8735.7723 -8735.7723
Loop time of 0.0824399 on 1 procs for 18 steps with 511 atoms
Memory usage per processor = 3.46425 Mbytes
Step Temp PotEng pe Press press
1000 1764.9513 -2091.5262 -2091.5262 13614.2 -13614.2
1010 1757.2735 -2089.1317 -2089.1317 13651.785 -13651.785
1020 1753.3209 -2086.4297 -2086.4297 14480.022 -14480.022
1030 1823.2413 -2088.3273 -2088.3273 14763.358 -14763.358
1040 1747.4815 -2085.2135 -2085.2135 14107.148 -14107.148
1050 1865.3945 -2089.8927 -2089.8927 13443.954 -13443.954
1060 1749.5134 -2086.9237 -2086.9237 12463.908 -12463.908
1070 1818.3433 -2088.489 -2088.489 11702.598 -11702.598
1080 1774.4835 -2087.1583 -2087.1583 11968.636 -11968.636
1090 1791.8684 -2086.9717 -2086.9717 12476.027 -12476.027
1100 1776.7994 -2085.7785 -2085.7785 12557.411 -12557.411
Loop time of 0.400532 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.46425 Mbytes
Step Temp PotEng pe Press press
1000 1776.7994 -2085.7785 -2085.7785 12557.411 -12557.411
1010 1781.5983 -2086.4116 -2086.4116 12411.379 -12411.379
1020 1766.8628 -2085.7302 -2085.7302 12437.454 -12437.454
1030 1724.3526 -2083.1516 -2083.1516 12967.409 -12967.409
1040 1813.5458 -2089.2031 -2089.2031 12731.996 -12731.996
1050 1823.2025 -2090.0138 -2090.0138 13073.37 -13073.37
1060 1744.3078 -2084.9931 -2084.9931 13907.188 -13907.188
1070 1762.0451 -2086.2933 -2086.2933 13637.485 -13637.485
1080 1812.7166 -2089.7323 -2089.7323 12912.923 -12912.923
1090 1759.0885 -2086.2747 -2086.2747 12825.799 -12825.799
1100 1747.6057 -2085.5621 -2085.5621 12412.448 -12412.448
Loop time of 0.400922 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 4.1509 Mbytes
Step Temp PotEng pe Press press
1100 1747.6057 -2085.5621 -2085.5621 12412.448 -12412.448
1117 1747.6057 -2213.2559 -2213.2559 8609.8758 -8609.8758
Loop time of 0.0766301 on 1 procs for 17 steps with 511 atoms
Memory usage per processor = 3.46425 Mbytes
Step Temp PotEng pe Press press
1100 1747.6057 -2085.5621 -2085.5621 12412.448 -12412.448
1110 1758.5768 -2086.2635 -2086.2635 11888.153 -11888.153
1120 1734.4951 -2084.5929 -2084.5929 11320.95 -11320.95
1130 1711.6046 -2082.9218 -2082.9218 10834.46 -10834.46
1140 1700.5918 -2081.9216 -2081.9216 10862.964 -10862.964
1150 1728.5246 -2083.3718 -2083.3718 11768.766 -11768.766
1160 1748.6602 -2084.2015 -2084.2015 12214.411 -12214.411
1170 1780.4912 -2085.7329 -2085.7329 13228.339 -13228.339
1180 1828.0881 -2088.2684 -2088.2684 14154.284 -14154.284
1190 1828.6577 -2087.7149 -2087.7149 14621.558 -14621.558
1200 1889.7698 -2091.2099 -2091.2099 14799.493 -14799.493
Loop time of 0.400419 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 4.1509 Mbytes
Step Temp PotEng pe Press press
1200 1889.7698 -2091.2099 -2091.2099 14799.493 -14799.493
1217 1889.7698 -2213.2775 -2213.2775 9590.9432 -9590.9432
Loop time of 0.0770869 on 1 procs for 17 steps with 511 atoms
Memory usage per processor = 3.46425 Mbytes
Step Temp PotEng pe Press press
1200 1889.7698 -2091.2099 -2091.2099 14799.493 -14799.493
1210 1817.0061 -2091.8637 -2091.8637 14115.007 -14115.007
1220 1769.2701 -2089.3809 -2089.3809 13154.1 -13154.1
1230 1791.8173 -2088.3806 -2088.3806 12662.593 -12662.593
1240 1775.1839 -2086.2759 -2086.2759 12186.686 -12186.686
1250 1876.826 -2090.8664 -2090.8664 12548.202 -12548.202
1260 1731.6933 -2085.9256 -2085.9256 12359.402 -12359.402
1270 1774.9438 -2083.8086 -2083.8086 12563.909 -12563.909
1280 1848.0675 -2086.5149 -2086.5149 12558.975 -12558.975
1290 1818.1154 -2087.2768 -2087.2768 11723.226 -11723.226
1300 1747.08 -2083.3509 -2083.3509 11535.663 -11535.663
Loop time of 0.402335 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.46425 Mbytes
Step Temp PotEng pe Press press
1200 1747.08 -2083.3509 -2083.3509 11535.663 -11535.663
1210 1752.9691 -2083.2609 -2083.2609 11834.866 -11834.866
1220 1823.3212 -2087.3629 -2087.3629 12499.403 -12499.403
1230 1774.9776 -2083.6328 -2083.6328 12533.22 -12533.22
1240 1725.7016 -2079.8262 -2079.8262 12633.851 -12633.851
1250 1802.8471 -2084.2886 -2084.2886 11908.609 -11908.609
1260 1765.2569 -2081.1366 -2081.1366 11995.465 -11995.465
1270 1772.7085 -2080.9417 -2080.9417 13011.132 -13011.132
1280 1879.131 -2087.2376 -2087.2376 13701.265 -13701.265
1290 1829.1775 -2083.2706 -2083.2706 13627.162 -13627.162
1300 1827.4168 -2082.5603 -2082.5603 13177.852 -13177.852
Loop time of 0.402936 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 4.1509 Mbytes
Step Temp PotEng pe Press press
1300 1827.4168 -2082.5603 -2082.5603 13177.852 -13177.852
1319 1827.4168 -2213.3119 -2213.3119 9167.0378 -9167.0378
Loop time of 0.0729902 on 1 procs for 19 steps with 511 atoms
Memory usage per processor = 3.46425 Mbytes
Step Temp PotEng pe Press press
1300 1827.4168 -2087.163 -2087.163 13112.67 -13112.67
1310 1796.3845 -2084.5418 -2084.5418 12877.075 -12877.075
1320 1804.7815 -2084.5307 -2084.5307 12329.177 -12329.177
1330 1760.2395 -2081.0245 -2081.0245 11376.822 -11376.822
1340 1707.4542 -2076.9345 -2076.9345 9898.7628 -9898.7628
1350 1788.1812 -2081.5651 -2081.5651 9675.5562 -9675.5562
1360 1761.7393 -2079.0647 -2079.0647 9312.9566 -9312.9566
1370 1669.2576 -2072.1836 -2072.1836 11208.069 -11208.069
1380 1803.1435 -2080.1133 -2080.1133 12095.508 -12095.508
1390 1915.98 -2086.5826 -2086.5826 13264.932 -13264.932
1400 1823.7614 -2079.6473 -2079.6473 14329.499 -14329.499
Loop time of 0.40572 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 4.1509 Mbytes
Step Temp PotEng pe Press press
1400 1823.7614 -2079.6473 -2079.6473 14329.499 -14329.499
1418 1823.7614 -2213.3012 -2213.3012 9138.9829 -9138.9829
Loop time of 0.0818188 on 1 procs for 18 steps with 511 atoms
Memory usage per processor = 3.46425 Mbytes
Step Temp PotEng pe Press press
1400 1823.7614 -2079.6473 -2079.6473 14329.499 -14329.499
1410 1836.7633 -2083.9051 -2083.9051 14250.169 -14250.169
1420 1785.8049 -2082.2333 -2082.2333 14417.759 -14417.759
1430 1877.1603 -2086.5842 -2086.5842 14013.962 -14013.962
1440 1793.9809 -2085.4935 -2085.4935 12849.985 -12849.985
1450 1794.6106 -2084.4385 -2084.4385 13285.03 -13285.03
1460 1808.7748 -2084.319 -2084.319 13418.461 -13418.461
1470 1862.4196 -2087.7471 -2087.7471 13825.267 -13825.267
1480 1724.2503 -2082.0886 -2082.0886 13650.767 -13650.767
1490 1818.9616 -2082.618 -2082.618 14249.096 -14249.096
1500 1877.1401 -2086.9965 -2086.9965 13415.256 -13415.256
Loop time of 0.404201 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.46425 Mbytes
Step Temp PotEng pe Press press
1400 1877.1401 -2086.9965 -2086.9965 13415.256 -13415.256
1410 1853.9818 -2084.822 -2084.822 13372.402 -13372.402
1420 1743.8168 -2076.9932 -2076.9932 13208 -13208
1430 1770.557 -2078.1674 -2078.1674 12799.186 -12799.186
1440 1857.6278 -2083.2642 -2083.2642 12283.874 -12283.874
1450 1823.6185 -2080.4181 -2080.4181 12111.743 -12111.743
1460 1769.7941 -2076.305 -2076.305 12296.853 -12296.853
1470 1869.2545 -2082.3071 -2082.3071 12401.939 -12401.939
1480 1771.1947 -2075.2969 -2075.2969 12829.718 -12829.718
1490 1817.4941 -2077.8337 -2077.8337 13290.882 -13290.882
1500 1943.883 -2085.652 -2085.652 13794.905 -13794.905
Loop time of 0.403978 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 4.1509 Mbytes
Step Temp PotEng pe Press press
1500 1943.883 -2085.652 -2085.652 13794.905 -13794.905
1520 1943.883 -2213.3255 -2213.3255 9966.5151 -9966.5151
Loop time of 0.0857961 on 1 procs for 20 steps with 511 atoms
Memory usage per processor = 3.46425 Mbytes
Step Temp PotEng pe Press press
1500 1943.883 -2085.652 -2085.652 13794.905 -13794.905
1510 1902.6049 -2082.5706 -2082.5706 13914.49 -13914.49
1520 1810.6671 -2076.2814 -2076.2814 13894.184 -13894.184
1530 1921.2021 -2083.42 -2083.42 13415.642 -13415.642
1540 1848.6946 -2078.6011 -2078.6011 12924.458 -12924.458
1550 1722.4625 -2070.2819 -2070.2819 13294.077 -13294.077
1560 1873.7756 -2080.2487 -2080.2487 12297.132 -12297.132
1570 1856.4219 -2079.1242 -2079.1242 12113.992 -12113.992
1580 1834.7147 -2077.8144 -2077.8144 12689.368 -12689.368
1590 1804.9482 -2075.9995 -2075.9995 13294.751 -13294.751
1600 1856.5909 -2079.5913 -2079.5913 13103.6 -13103.6
Loop time of 0.404638 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 4.1509 Mbytes
Step Temp PotEng pe Press press
1600 1856.5909 -2079.5913 -2079.5913 13103.6 -13103.6
1619 1856.5909 -2213.2905 -2213.2905 9362.9644 -9362.9644
Loop time of 0.0915599 on 1 procs for 19 steps with 511 atoms
Memory usage per processor = 3.46425 Mbytes
Step Temp PotEng pe Press press
1600 1856.5909 -2079.5913 -2079.5913 13103.6 -13103.6
1610 1872.5062 -2080.8936 -2080.8936 12857.235 -12857.235
1620 1894.1291 -2082.6822 -2082.6822 14225.45 -14225.45
1630 1905.1025 -2083.9149 -2083.9149 15128.568 -15128.568
1640 1843.7493 -2080.4943 -2080.4943 14687.965 -14687.965
1650 1847.0973 -2081.4043 -2081.4043 14022.852 -14022.852
1660 1911.7961 -2086.4601 -2086.4601 13335.97 -13335.97
1670 1816.5545 -2081.0829 -2081.0829 13288.229 -13288.229
1680 1691.8634 -2073.6944 -2073.6944 13739.446 -13739.446
1690 1820.9023 -2082.9567 -2082.9567 13286.961 -13286.961
1700 1830.8516 -2084.3979 -2084.3979 12591.506 -12591.506
Loop time of 0.406205 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 4.1509 Mbytes
Step Temp PotEng pe Press press
1700 1830.8516 -2084.3979 -2084.3979 12591.506 -12591.506
1718 1830.8516 -2213.2889 -2213.2889 9188.2547 -9188.2547
Loop time of 0.0804758 on 1 procs for 18 steps with 511 atoms
Memory usage per processor = 3.46425 Mbytes
Step Temp PotEng pe Press press
1700 1830.8516 -2087.6647 -2087.6647 12647.034 -12647.034
1710 1781.7291 -2085.2355 -2085.2355 13342.158 -13342.158
1720 1753.6485 -2084.15 -2084.15 12521.031 -12521.031
1730 1789.4412 -2087.2263 -2087.2263 12016.078 -12016.078
1740 1777.2163 -2087.1133 -2087.1133 11759.495 -11759.495
1750 1728.4234 -2084.5329 -2084.5329 12153.344 -12153.344
1760 1759.0263 -2087.1012 -2087.1012 12283.283 -12283.283
1770 1794.1876 -2089.9477 -2089.9477 12397.928 -12397.928
1780 1684.6744 -2083.1766 -2083.1766 13026.967 -13026.967
1790 1787.6124 -2090.3399 -2090.3399 12227.435 -12227.435
1800 1785.4311 -2090.5309 -2090.5309 12127.971 -12127.971
Loop time of 0.401389 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 4.1509 Mbytes
Step Temp PotEng pe Press press
1800 1785.4311 -2090.5309 -2090.5309 12127.971 -12127.971
1818 1785.4311 -2213.2979 -2213.2979 8874.1326 -8874.1326
Loop time of 0.077498 on 1 procs for 18 steps with 511 atoms
Memory usage per processor = 3.46425 Mbytes
Step Temp PotEng pe Press press
1800 1785.4311 -2086.3241 -2086.3241 14237.597 -14237.597
1810 1918.507 -2095.523 -2095.523 13666.937 -13666.937
1820 1724.6412 -2083.2182 -2083.2182 14011.6 -14011.6
1830 1798.6383 -2088.5457 -2088.5457 13059.581 -13059.581
1840 1818.6155 -2090.3328 -2090.3328 11731.7 -11731.7
1850 1527.4515 -2071.4928 -2071.4928 11697.062 -11697.062
1860 1647.2859 -2079.5226 -2079.5226 11334.81 -11334.81
1870 1823.0832 -2091.0629 -2091.0629 11366.978 -11366.978
1880 1667.7445 -2080.7094 -2080.7094 13478.364 -13478.364
1890 1736.1891 -2085.0097 -2085.0097 14321.25 -14321.25
1900 2002.185 -2102.2695 -2102.2695 13972.239 -13972.239
Loop time of 0.40372 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 4.1509 Mbytes
Step Temp PotEng pe Press press
1900 2002.185 -2102.2695 -2102.2695 13972.239 -13972.239
1915 2002.185 -2213.2292 -2213.2292 10360.023 -10360.023
Loop time of 0.060513 on 1 procs for 15 steps with 511 atoms
Memory usage per processor = 3.46425 Mbytes
Step Temp PotEng pe Press press
1900 2002.185 -2102.2695 -2102.2695 13972.239 -13972.239
1910 1788.8275 -2084.0536 -2084.0536 12265.481 -12265.481
1920 1787.8258 -2083.0286 -2083.0286 12116.717 -12116.717
1930 1737.9359 -2078.6988 -2078.6988 11353.359 -11353.359
1940 1784.2854 -2077.3907 -2077.3907 11984.047 -11984.047
1950 1762.2976 -2074.6032 -2074.6032 11533.666 -11533.666
1960 1843.1628 -2077.1232 -2077.1232 11898.025 -11898.025
1970 1876.6206 -2081.8932 -2081.8932 11427.224 -11427.224
1980 1733.4297 -2077.2501 -2077.2501 11450.967 -11450.967
1990 1833.6341 -2079.1971 -2079.1971 11725.605 -11725.605
2000 1709.1932 -2072.9342 -2072.9342 10821.172 -10821.172
Loop time of 0.407887 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.46425 Mbytes
Step Temp PotEng pe Press press
1900 1709.1932 -2072.9342 -2072.9342 10821.172 -10821.172
1910 1806.446 -2078.9958 -2078.9958 10817.607 -10817.607
1920 1903.1662 -2084.9998 -2084.9998 11187.52 -11187.52
1930 1815.466 -2078.929 -2078.929 12306.709 -12306.709
1940 1846.9897 -2080.7847 -2080.7847 12435.927 -12435.927
1950 1849.6235 -2080.7759 -2080.7759 13228.482 -13228.482
1960 1835.9275 -2079.747 -2079.747 14091.162 -14091.162
1970 1928.3128 -2085.7926 -2085.7926 13599.09 -13599.09
1980 1894.2673 -2083.6543 -2083.6543 12405.33 -12405.33
1990 1742.6618 -2073.8472 -2073.8472 12518.714 -12518.714
2000 1849.9788 -2081.1175 -2081.1175 12525.185 -12525.185
Loop time of 0.408489 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 4.1509 Mbytes
Step Temp PotEng pe Press press
2000 1849.9788 -2081.1175 -2081.1175 12525.185 -12525.185
2018 1849.9788 -2213.3121 -2213.3121 9316.5096 -9316.5096
Loop time of 0.0808918 on 1 procs for 18 steps with 511 atoms
Memory usage per processor = 3.46425 Mbytes
Step Temp PotEng pe Press press
2000 1849.9788 -2081.1175 -2081.1175 12525.185 -12525.185
2010 1879.9916 -2083.3422 -2083.3422 12343.403 -12343.403
2020 1763.0383 -2075.9488 -2075.9488 12909.373 -12909.373
2030 1812.0591 -2079.4896 -2079.4896 12980.784 -12980.784
2040 1915.5724 -2086.684 -2086.684 12792.194 -12792.194
2050 1813.8598 -2080.4575 -2080.4575 13629.345 -13629.345
2060 1786.939 -2079.1974 -2079.1974 13775.147 -13775.147
2070 1840.8911 -2083.2839 -2083.2839 13067.981 -13067.981
2080 1820.7692 -2082.5412 -2082.5412 11627.112 -11627.112
2090 1768.3414 -2079.6773 -2079.6773 11394.217 -11394.217
2100 1809.2469 -2082.9637 -2082.9637 11569.174 -11569.174
Loop time of 0.408726 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 4.1509 Mbytes
Step Temp PotEng pe Press press
2100 1809.2469 -2082.9637 -2082.9637 11569.174 -11569.174
2118 1809.2469 -2213.267 -2213.267 9042.6736 -9042.6736
Loop time of 0.074374 on 1 procs for 18 steps with 511 atoms
Memory usage per processor = 3.46425 Mbytes
Step Temp PotEng pe Press press
2100 1809.2469 -2082.9637 -2082.9637 11569.174 -11569.174
2110 1778.8009 -2081.5436 -2081.5436 12115.814 -12115.814
2120 1753.2121 -2080.4046 -2080.4046 11687.8 -11687.8
2130 1816.5924 -2085.1105 -2085.1105 12184.268 -12184.268
2140 1803.7233 -2084.8061 -2084.8061 12645.687 -12645.687
2150 1739.7511 -2081.1103 -2081.1103 12897.726 -12897.726
2160 1799.2515 -2085.5158 -2085.5158 12342.394 -12342.394
2170 1809.5854 -2086.6867 -2086.6867 12079.69 -12079.69
2180 1732.9309 -2082.1018 -2082.1018 12739.154 -12739.154
2190 1784.3142 -2085.9061 -2085.9061 12725.543 -12725.543
2200 1851.3105 -2090.747 -2090.747 13131.566 -13131.566
Loop time of 0.405298 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 4.1509 Mbytes
Step Temp PotEng pe Press press
2200 1851.3105 -2090.747 -2090.747 13131.566 -13131.566
2216 1851.3105 -2213.2546 -2213.2546 9356.824 -9356.824
Loop time of 0.0659709 on 1 procs for 16 steps with 511 atoms
Memory usage per processor = 3.46425 Mbytes
Step Temp PotEng pe Press press
2200 1851.3105 -2090.747 -2090.747 13131.566 -13131.566
2210 1728.4848 -2086.4483 -2086.4483 12763.127 -12763.127
2220 1869.2268 -2091.4617 -2091.4617 12345.509 -12345.509
2230 1748.5328 -2088.5167 -2088.5167 12331.154 -12331.154
2240 1828.4798 -2090.877 -2090.877 11944.504 -11944.504
2250 1671.249 -2082.8299 -2082.8299 11981.936 -11981.936
2260 1803.8541 -2083.5098 -2083.5098 11825.621 -11825.621
2270 1783.8565 -2082.87 -2082.87 12321.579 -12321.579
2280 1802.6142 -2083.478 -2083.478 12892.956 -12892.956
2290 1873.6274 -2088.8319 -2088.8319 12640.162 -12640.162
2300 1748.1477 -2085.9312 -2085.9312 12182.08 -12182.08
Loop time of 0.405637 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.46425 Mbytes
Step Temp PotEng pe Press press
2200 1748.1477 -2085.9312 -2085.9312 12182.08 -12182.08
2210 1737.1223 -2085.6717 -2085.6717 12674.818 -12674.818
2220 1780.721 -2088.9818 -2088.9818 12059.005 -12059.005
2230 1683.4804 -2082.9481 -2082.9481 11521.791 -11521.791
2240 1683.4871 -2083.2141 -2083.2141 11645.317 -11645.317
2250 1766.0609 -2088.8134 -2088.8134 11873.583 -11873.583
2260 1760.5802 -2088.5494 -2088.5494 12045.37 -12045.37
2270 1750.6376 -2087.9506 -2087.9506 12278.48 -12278.48
2280 1764.7771 -2088.883 -2088.883 12338.109 -12338.109
2290 1775.2688 -2089.5286 -2089.5286 12711.119 -12711.119
2300 1744.4431 -2087.3965 -2087.3965 12137.524 -12137.524
Loop time of 0.407328 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 4.1509 Mbytes
Step Temp PotEng pe Press press
2300 1744.4431 -2087.3965 -2087.3965 12137.524 -12137.524
2318 1744.4431 -2213.2926 -2213.2926 8591.6382 -8591.6382
Loop time of 0.0821919 on 1 procs for 18 steps with 511 atoms
Memory usage per processor = 3.46425 Mbytes
Step Temp PotEng pe Press press
2300 1744.4431 -2088.3257 -2088.3257 12585.86 -12585.86
2310 1671.1466 -2083.2878 -2083.2878 13129.826 -13129.826
2320 1823.166 -2092.9509 -2092.9509 12802.838 -12802.838
2330 1864.4223 -2095.2301 -2095.2301 13029.361 -13029.361
2340 1735.1868 -2086.2632 -2086.2632 12646.158 -12646.158
2350 1761.5574 -2087.4854 -2087.4854 11133.801 -11133.801
2360 1635.2722 -2078.4643 -2078.4643 11199.557 -11199.557
2370 1602.7307 -2075.3996 -2075.3996 11325.477 -11325.477
2380 1792.2259 -2086.6129 -2086.6129 11066.178 -11066.178
2390 1779.6059 -2084.255 -2084.255 12155.297 -12155.297
2400 1807.024 -2084.5506 -2084.5506 13930.07 -13930.07
Loop time of 0.403617 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 4.1509 Mbytes
Step Temp PotEng pe Press press
2400 1807.024 -2084.5506 -2084.5506 13930.07 -13930.07
2416 1807.024 -2213.2643 -2213.2643 9025.9846 -9025.9846
Loop time of 0.0602131 on 1 procs for 16 steps with 511 atoms
Memory usage per processor = 3.46425 Mbytes
Step Temp PotEng pe Press press
2400 1807.024 -2084.5506 -2084.5506 13930.07 -13930.07
2410 1789.2623 -2081.0159 -2081.0159 13216.137 -13216.137
2420 1868.1832 -2084.1484 -2084.1484 13674.14 -13674.14
2430 1815.8238 -2084.0504 -2084.0504 13193.686 -13193.686
2440 1761.6489 -2080.5612 -2080.5612 12620.462 -12620.462
2450 1942.764 -2089.1534 -2089.1534 12560.444 -12560.444
2460 1761.4968 -2085.9894 -2085.9894 12044.253 -12044.253
2470 1832.5793 -2087.6087 -2087.6087 13042.599 -13042.599
2480 1719.2467 -2081.8214 -2081.8214 12359.123 -12359.123
2490 1854.8455 -2084.9927 -2084.9927 13001.039 -13001.039
2500 1754.8221 -2081.6196 -2081.6196 13354.565 -13354.565
Loop time of 0.398675 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.46425 Mbytes
Step Temp PotEng pe Press press
2400 1754.8221 -2081.6196 -2081.6196 13354.565 -13354.565
2410 1847.5489 -2087.3573 -2087.3573 13279.43 -13279.43
2420 1857.0687 -2087.6534 -2087.6534 13007.397 -13007.397
2430 1829.3543 -2085.5876 -2085.5876 13129.892 -13129.892
2440 1857.1726 -2087.2604 -2087.2604 13005.421 -13005.421
2450 1732.2638 -2078.9022 -2078.9022 12655.025 -12655.025
2460 1672.8241 -2074.8001 -2074.8001 12792.342 -12792.342
2470 1813.545 -2083.7757 -2083.7757 12397.761 -12397.761
2480 1843.7288 -2085.4348 -2085.4348 12918.842 -12918.842
2490 1753.2569 -2079.1765 -2079.1765 13719.969 -13719.969
2500 1814.6389 -2082.9091 -2082.9091 13082.817 -13082.817
Loop time of 0.402278 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 4.1509 Mbytes
Step Temp PotEng pe Press press
2500 1814.6389 -2082.9091 -2082.9091 13082.817 -13082.817
2517 1814.6389 -2213.2724 -2213.2724 9077.1094 -9077.1094
Loop time of 0.074755 on 1 procs for 17 steps with 511 atoms
Memory usage per processor = 3.46425 Mbytes
Step Temp PotEng pe Press press
2500 1814.6389 -2085.5282 -2085.5282 13473.748 -13473.748
2510 1830.6878 -2086.254 -2086.254 13514.766 -13514.766
2520 1820.4168 -2085.2604 -2085.2604 13774.977 -13774.977
2530 1819.7357 -2084.9269 -2084.9269 13791.306 -13791.306
2540 1822.2331 -2084.8254 -2084.8254 13511.1 -13511.1
2550 1737.9592 -2078.9962 -2078.9962 13035.17 -13035.17
2560 1747.9559 -2079.3214 -2079.3214 12366.667 -12366.667
2570 1814.8736 -2083.3028 -2083.3028 12567.454 -12567.454
2580 1812.6737 -2082.6848 -2082.6848 13509.323 -13509.323
2590 1824.1355 -2082.9605 -2082.9605 13579.715 -13579.715
2600 1808.8179 -2081.4431 -2081.4431 13783.499 -13783.499
Loop time of 0.407595 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 4.1509 Mbytes
Step Temp PotEng pe Press press
2600 1808.8179 -2081.4431 -2081.4431 13783.499 -13783.499
2617 1808.8179 -2213.2777 -2213.2777 9035.0068 -9035.0068
Loop time of 0.07546 on 1 procs for 17 steps with 511 atoms
Memory usage per processor = 3.46425 Mbytes
Step Temp PotEng pe Press press
2600 1808.8179 -2081.4431 -2081.4431 13783.499 -13783.499
2610 1778.9399 -2080.2036 -2080.2036 13525.725 -13525.725
2620 1769.8298 -2077.5881 -2077.5881 12710.991 -12710.991
2630 1909.9948 -2084.1402 -2084.1402 13185.774 -13185.774
2640 1812.6099 -2084.2544 -2084.2544 12323.026 -12323.026
2650 1847.6152 -2086.6168 -2086.6168 12401.635 -12401.635
2660 1774.4533 -2084.097 -2084.097 12007.426 -12007.426
2670 1880.7444 -2088.4628 -2088.4628 12742.628 -12742.628
2680 1789.6064 -2086.7865 -2086.7865 12405.705 -12405.705
2690 1805.4657 -2086.0746 -2086.0746 13046.691 -13046.691
2700 1715.9361 -2079.3921 -2079.3921 13550.296 -13550.296
Loop time of 0.402788 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.46425 Mbytes
Step Temp PotEng pe Press press
2600 1715.9361 -2079.3921 -2079.3921 13550.296 -13550.296
2610 1769.8826 -2081.7109 -2081.7109 13346.338 -13346.338
2620 1917.8144 -2090.1178 -2090.1178 13745.69 -13745.69
2630 1800.6371 -2081.1476 -2081.1476 15416.227 -15416.227
2640 1826.9321 -2081.8258 -2081.8258 14684.23 -14684.23
2650 1835.7532 -2081.4253 -2081.4253 13979.269 -13979.269
2660 1816.4976 -2079.3394 -2079.3394 14076.099 -14076.099
2670 1854.8835 -2081.1776 -2081.1776 15215.906 -15215.906
2680 1930.4826 -2085.6342 -2085.6342 15410.549 -15410.549
2690 1807.3276 -2077.1822 -2077.1822 15495.416 -15495.416
2700 1765.2476 -2074.1571 -2074.1571 14895.899 -14895.899
Loop time of 0.405005 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 4.1509 Mbytes
Step Temp PotEng pe Press press
2700 1765.2476 -2074.1571 -2074.1571 14895.899 -14895.899
2717 1765.2476 -2213.3086 -2213.3086 8736.1326 -8736.1326
Loop time of 0.072823 on 1 procs for 17 steps with 511 atoms
Memory usage per processor = 3.46425 Mbytes
Step Temp PotEng pe Press press
2700 1765.2476 -2074.1571 -2074.1571 14895.899 -14895.899
2710 1932.7218 -2084.997 -2084.997 13902.489 -13902.489
2720 1822.4199 -2077.6323 -2077.6323 14483.587 -14483.587
2730 1800.5942 -2076.1722 -2076.1722 14278.621 -14278.621
2740 1918.5585 -2083.9722 -2083.9722 13671.108 -13671.108
2750 1810.9326 -2076.9785 -2076.9785 14527.675 -14527.675
2760 1827.8625 -2078.2331 -2078.2331 14562.523 -14562.523
2770 1936.0711 -2085.565 -2085.565 14897.342 -14897.342
2780 1875.7442 -2081.9066 -2081.9066 15317.97 -15317.97
2790 1807.583 -2077.789 -2077.789 15199.853 -15199.853
2800 1918.0402 -2085.4868 -2085.4868 13912.669 -13912.669
Loop time of 0.403916 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 4.1509 Mbytes
Step Temp PotEng pe Press press
2800 1918.0402 -2085.4868 -2085.4868 13912.669 -13912.669
2816 1918.0402 -2213.2806 -2213.2806 9786.7754 -9786.7754
Loop time of 0.066474 on 1 procs for 16 steps with 511 atoms
Memory usage per processor = 3.46425 Mbytes
Step Temp PotEng pe Press press
2800 1918.0402 -2085.4868 -2085.4868 13912.669 -13912.669
2810 1884.6142 -2083.8092 -2083.8092 13921.428 -13921.428
2820 1715.3054 -2073.1756 -2073.1756 14773.37 -14773.37
2830 1798.7229 -2079.1189 -2079.1189 14194.791 -14194.791
2840 1861.2736 -2083.6681 -2083.6681 13581.117 -13581.117
2850 1788.1708 -2079.2967 -2079.2967 14366.864 -14366.864
2860 1802.9411 -2080.6891 -2080.6891 15197.867 -15197.867
2870 1897.2584 -2087.3478 -2087.3478 14694.389 -14694.389
2880 1837.217 -2083.9084 -2083.9084 15138.466 -15138.466
2890 1746.8234 -2078.4519 -2078.4519 16095.128 -16095.128
2900 1840.4892 -2085.0945 -2085.0945 15441.757 -15441.757
Loop time of 0.406144 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 4.1509 Mbytes
Step Temp PotEng pe Press press
2900 1840.4892 -2085.0945 -2085.0945 15441.757 -15441.757
2918 1840.4892 -2213.2962 -2213.2962 9251.7041 -9251.7041
Loop time of 0.0740509 on 1 procs for 18 steps with 511 atoms
Memory usage per processor = 3.46425 Mbytes
Step Temp PotEng pe Press press
2900 1840.4892 -2085.0945 -2085.0945 15441.757 -15441.757
2910 1845.6426 -2085.9186 -2085.9186 14719.474 -14719.474
2920 1788.0277 -2082.6226 -2082.6226 15135.698 -15135.698
2930 1813.3681 -2084.7672 -2084.7672 15223.094 -15223.094
2940 1854.5573 -2087.976 -2087.976 14902.44 -14902.44
2950 1793.0896 -2084.4254 -2084.4254 15276.721 -15276.721
2960 1801.5081 -2085.4707 -2085.4707 14369.243 -14369.243
2970 1737.2525 -2081.6733 -2081.6733 13137.903 -13137.903
2980 1667.5915 -2077.4002 -2077.4002 13540.818 -13540.818
2990 1731.5672 -2081.7775 -2081.7775 14579.571 -14579.571
3000 1848.771 -2089.5988 -2089.5988 14254.75 -14254.75
Loop time of 0.406362 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 4.1509 Mbytes
Step Temp PotEng pe Press press
3000 1848.771 -2089.5988 -2089.5988 14254.75 -14254.75
3017 1848.771 -2213.2902 -2213.2902 9311.2757 -9311.2757
Loop time of 0.0744669 on 1 procs for 17 steps with 511 atoms
Memory usage per processor = 3.46425 Mbytes
Step Temp PotEng pe Press press
3000 1848.771 -2080.3808 -2080.3808 14030.45 -14030.45
Loop time of 13.0158 on 1 procs for 17 steps with 511 atoms
PRD stats:
Dephase time (%) = 2.82206 (21.6817)
Dynamics time (%) = 8.09469 (62.1911)
Quench time (%) = 1.50604 (11.5708)
Other time (%) = 0.271107 (2.0829)
Nlocal: 511 ave 511 max 511 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Nghost: 1017 ave 1017 max 1017 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Neighs: 0 ave 0 max 0 min
Histogram: 1 0 0 0 0 0 0 0 0 0
FullNghs: 13428 ave 13428 max 13428 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Total # of neighbors = 13428
Ave neighs/atom = 26.2779
Neighbor list builds = 95
Dangerous builds = 0

View File

@ -0,0 +1,731 @@
LAMMPS (10 Sep 2010)
Processor partition = 1
# Parallel replica dynamics model for a single vacancy in bulk Si
# events occur when a neighboring atom diffuses to the vacant site
# run this on multiple partitions as
# mpirun -np 4 lmp_g++ -partition 4x1 -in in.prd
units metal
atom_style atomic
atom_modify map array
boundary p p p
atom_modify sort 0 0.0
# temperature
variable t equal 1800.0
# coordination number cutoff
variable r equal 2.835
# minimization parameters
variable etol equal 1.0e-5
variable ftol equal 1.0e-5
variable maxiter equal 100
variable maxeval equal 100
variable dmax equal 1.0e-1
# diamond unit cell
variable a equal 5.431
lattice custom $a a1 1.0 0.0 0.0 a2 0.0 1.0 0.0 a3 0.0 0.0 1.0 basis 0.0 0.0 0.0 basis 0.0 0.5 0.5 basis 0.5 0.0 0.5 basis 0.5 0.5 0.0 basis 0.25 0.25 0.25 basis 0.25 0.75 0.75 basis 0.75 0.25 0.75 basis 0.75 0.75 0.25
lattice custom 5.431 a1 1.0 0.0 0.0 a2 0.0 1.0 0.0 a3 0.0 0.0 1.0 basis 0.0 0.0 0.0 basis 0.0 0.5 0.5 basis 0.5 0.0 0.5 basis 0.5 0.5 0.0 basis 0.25 0.25 0.25 basis 0.25 0.75 0.75 basis 0.75 0.25 0.75 basis 0.75 0.75 0.25
Lattice spacing in x,y,z = 5.431 5.431 5.431
region myreg block 0 4 0 4 0 4
create_box 1 myreg
Created orthogonal box = (0 0 0) to (21.724 21.724 21.724)
1 by 1 by 1 processor grid
create_atoms 1 region myreg
Created 512 atoms
mass 1 28.06
group Si type 1
512 atoms in group Si
velocity all create $t 5287287 mom yes rot yes dist gaussian
velocity all create 1800 5287287 mom yes rot yes dist gaussian
# make a vacancy
group del id 300
1 atoms in group del
delete_atoms group del
Deleted 1 atoms, new total = 511
pair_style sw
pair_coeff * * Si.sw Si
thermo 10
fix 1 all nvt temp $t $t 0.1
fix 1 all nvt temp 1800 $t 0.1
fix 1 all nvt temp 1800 1800 0.1
timestep 1.0e-3
neighbor 1.0 bin
neigh_modify every 1 delay 10 check yes
# equilibrate
run 1000
Memory usage per processor = 1.70934 Mbytes
Step Temp E_pair E_mol TotEng Press
0 1802.5039 -2211.666 0 -2092.8401 12351.692
10 996.01982 -2158.3093 0 -2092.649 14285.475
20 590.09928 -2131.1531 0 -2092.2521 12113.964
30 1033.01 -2159.2522 0 -2091.1534 6860.4116
40 724.76581 -2137.281 0 -2089.5025 5999.4372
50 489.66604 -2120.8082 0 -2088.5281 6403.4234
60 960.70653 -2150.7394 0 -2087.407 5687.324
70 908.41498 -2145.7665 0 -2085.8813 8220.9655
80 796.82286 -2137.1227 0 -2084.5941 11307.153
90 1245.9045 -2164.9841 0 -2082.8507 11282.071
100 1083.0647 -2152.0805 0 -2080.682 12015.018
110 846.80459 -2134.8152 0 -2078.9916 11904.208
120 1130.5577 -2151.6282 0 -2077.0988 9631.0553
130 1011.5223 -2141.5579 0 -2074.8757 9674.727
140 828.13015 -2127.6781 0 -2073.0856 10663.754
150 1213.6842 -2151.0205 0 -2071.0112 9358.162
160 1118.1701 -2142.223 0 -2068.5102 9705.042
170 815.94964 -2120.3781 0 -2066.5885 11111.781
180 1149.9499 -2140.3762 0 -2064.5684 10362.874
190 1265.3227 -2145.3133 0 -2061.8998 10208.885
200 967.96035 -2123.4032 0 -2059.5927 11429.676
210 1154.8198 -2133.5775 0 -2057.4487 10697.231
220 1309.6664 -2141.0968 0 -2054.7601 10123.484
230 1123.114 -2126.2814 0 -2052.2427 11010.813
240 1262.1761 -2133.0492 0 -2049.8432 10358.728
250 1387.1979 -2138.5224 0 -2047.0746 9224.1203
260 1099.3995 -2117.0127 0 -2044.5373 9902.009
270 1119.6867 -2116.1281 0 -2042.3154 9925.7178
280 1412.0178 -2132.6875 0 -2039.6036 8270.5884
290 1321.0773 -2123.8202 0 -2036.7313 8809.0223
300 1216.0708 -2114.3828 0 -2034.2162 9035.0512
310 1359.9122 -2121.2409 0 -2031.5918 7895.5635
320 1322.8642 -2116.0313 0 -2028.8245 8661.9299
330 1272.4262 -2110.1033 0 -2026.2215 10341.489
340 1451.8803 -2119.1983 0 -2023.4865 10343.627
350 1488.8525 -2118.6967 0 -2020.5476 10786.017
360 1330.5957 -2105.5746 0 -2017.8582 11501.105
370 1452.1996 -2110.9637 0 -2015.2308 11534.951
380 1598.8893 -2117.7127 0 -2012.3096 12209.282
390 1593.9074 -2114.5133 0 -2009.4386 13050.071
400 1580.9099 -2110.9274 0 -2006.7096 12007.149
410 1499.3026 -2102.9454 0 -2004.1074 10088.553
420 1368.9435 -2091.8877 0 -2001.6433 8465.3083
430 1297.2041 -2084.7532 0 -1999.2381 7269.5758
440 1450.1063 -2092.2353 0 -1996.6405 7033.8027
450 1534.8081 -2094.9394 0 -1993.7608 9081.5997
460 1556.639 -2093.5424 0 -1990.9246 12400.015
470 1803.1464 -2106.8774 0 -1988.0092 14192.515
480 1865.4976 -2108.05 0 -1985.0714 16740.251
490 1809.642 -2101.8102 0 -1982.5137 17670.617
500 1875.0318 -2103.7815 0 -1980.1744 15726.048
510 1835.5401 -2099.0223 0 -1978.0186 13590.87
520 1592.2743 -2081.0889 0 -1976.1219 12889.185
530 1621.098 -2081.1646 0 -1974.2975 12097.358
540 1787.4042 -2090.0335 0 -1972.203 11006.55
550 1629.769 -2077.5584 0 -1970.1196 11828.612
560 1633.9967 -2075.8478 0 -1968.1303 13013.747
570 1867.8884 -2089.0683 0 -1965.9321 12589.17
580 1897.3799 -2088.7925 0 -1963.7122 12142.767
590 1675.1213 -2072.2289 0 -1961.8004 12668.905
600 1852.5707 -2082.1073 0 -1959.9809 11872.082
610 1895.1634 -2083.0113 0 -1958.0771 12732.408
620 1759.7637 -2072.4168 0 -1956.4085 14720.014
630 1867.9005 -2077.9673 0 -1954.8303 15446.507
640 1882.4501 -2077.3643 0 -1953.2682 16189.673
650 1830.0215 -2072.5142 0 -1951.8743 15952.621
660 1989.6605 -2081.7336 0 -1950.5699 14441.731
670 2019.3348 -2082.5674 0 -1949.4475 13093.568
680 1806.7881 -2067.7448 0 -1948.6365 13695.415
690 1860.9944 -2070.6335 0 -1947.9518 13711.769
700 2035.4273 -2081.5085 0 -1947.3277 13969.607
710 1924.1115 -2073.7877 0 -1946.9451 14669.272
720 1925.0897 -2073.7075 0 -1946.8005 14665.913
730 1979.7127 -2077.3504 0 -1946.8425 14625.754
740 1932.6041 -2074.5197 0 -1947.1173 15051.1
750 1873.6645 -2071.0745 0 -1947.5575 14804.579
760 1916.3833 -2074.4703 0 -1948.1372 13868.322
770 1893.2199 -2073.6709 0 -1948.8647 14320.209
780 1868.0258 -2072.8444 0 -1949.6991 13913.255
790 1903.3142 -2076.1305 0 -1950.6589 13542.781
800 1852.3079 -2073.8193 0 -1951.7102 13663.021
810 1874.015 -2076.3795 0 -1952.8394 12583.329
820 1897.7242 -2079.181 0 -1954.0779 12629.436
830 1810.9511 -2074.7734 0 -1955.3907 13791.194
840 1751.9411 -2072.1105 0 -1956.6178 14705.479
850 1904.2872 -2083.4009 0 -1957.8652 14745.454
860 1916.5803 -2085.6068 0 -1959.2607 14829.039
870 1838.661 -2081.9371 0 -1960.7276 14932.396
880 1847.5879 -2084.017 0 -1962.219 14581.23
890 1850.4293 -2085.7191 0 -1963.7338 13109.312
900 1822.6233 -2085.4213 0 -1965.2691 13769.397
910 1786.0307 -2084.4806 0 -1966.7407 13450.462
920 1823.0469 -2088.3777 0 -1968.1976 12242.2
930 1731.0515 -2083.7104 0 -1969.5949 11686.755
940 1635.923 -2078.6209 0 -1970.7765 11861.596
950 1731.8445 -2085.9611 0 -1971.7933 11269.332
960 1735.3582 -2087.1207 0 -1972.7212 11587.883
970 1672.4435 -2083.7706 0 -1973.5187 12217.898
980 1703.4917 -2086.4744 0 -1974.1757 12431.952
990 1733.7211 -2089.007 0 -1974.7155 12829.553
1000 1764.9513 -2091.5262 0 -1975.1759 13614.2
Loop time of 3.8726 on 1 procs for 1000 steps with 511 atoms
Pair time (%) = 3.78509 (97.7403)
Neigh time (%) = 0.0425732 (1.09934)
Comm time (%) = 0.0137811 (0.355861)
Outpt time (%) = 0.00131321 (0.0339103)
Other time (%) = 0.0298429 (0.770615)
Nlocal: 511 ave 511 max 511 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Nghost: 1017 ave 1017 max 1017 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Neighs: 0 ave 0 max 0 min
Histogram: 1 0 0 0 0 0 0 0 0 0
FullNghs: 13440 ave 13440 max 13440 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Total # of neighbors = 13440
Ave neighs/atom = 26.3014
Neighbor list builds = 44
Dangerous builds = 0
# only output atoms near vacancy
compute coord all coord/atom $r
compute coord all coord/atom 2.835
dump events all custom 1 dump.prd id type x y z
dump_modify events thresh c_coord != 4
compute patom all pe/atom
compute pe all reduce sum c_patom
compute satom all stress/atom
compute str all reduce sum c_satom[1] c_satom[2] c_satom[3]
variable press equal (c_str[1]+c_str[2]+c_str[3])/(3*vol)
thermo_style custom step temp pe c_pe press v_press
compute 1 all event/displace 0.5
prd 2000 100 10 10 100 1 54985 temp $t min ${etol} ${ftol} ${maxiter} ${maxeval} vel all uniform
prd 2000 100 10 10 100 1 54985 temp 1800 min ${etol} ${ftol} ${maxiter} ${maxeval} vel all uniform
prd 2000 100 10 10 100 1 54985 temp 1800 min 1e-05 ${ftol} ${maxiter} ${maxeval} vel all uniform
prd 2000 100 10 10 100 1 54985 temp 1800 min 1e-05 1e-05 ${maxiter} ${maxeval} vel all uniform
prd 2000 100 10 10 100 1 54985 temp 1800 min 1e-05 1e-05 100 ${maxeval} vel all uniform
prd 2000 100 10 10 100 1 54985 temp 1800 min 1e-05 1e-05 100 100 vel all uniform
Memory usage per processor = 3.42595 Mbytes
Step Temp PotEng pe Press press
1000 1764.9513 -2091.5262 -2091.5262 13614.2 -13614.2
1010 1764.9513 -2212.5976 -2212.5976 8682.8748 -8682.8748
1018 1764.9513 -2213.2997 -2213.2997 8735.7723 -8735.7723
Loop time of 0.0826561 on 1 procs for 18 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
1000 1764.9513 -2091.5262 -2091.5262 13614.2 -13614.2
1010 1768.0231 -2089.8576 -2089.8576 14069.687 -14069.687
1020 1840.9705 -2093.0158 -2093.0158 13640.395 -13640.395
1030 1755.752 -2090.5439 -2090.5439 13280.689 -13280.689
1040 1826.8029 -2092.7589 -2092.7589 13181.779 -13181.779
1050 1776.3468 -2091.6533 -2091.6533 13954.866 -13954.866
1060 1773.3034 -2090.3356 -2090.3356 13916.088 -13916.088
1070 1795.8634 -2090.4918 -2090.4918 13926.917 -13926.917
1080 1795.808 -2090.644 -2090.644 14030.734 -14030.734
1090 1805.9489 -2091.4575 -2091.4575 14139.145 -14139.145
1100 1776.3872 -2090.3308 -2090.3308 13931.217 -13931.217
Loop time of 0.398833 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
1000 1776.3872 -2090.3308 -2090.3308 13931.217 -13931.217
1010 1712.3527 -2086.4783 -2086.4783 13676.101 -13676.101
1020 1773.2651 -2090.7926 -2090.7926 11769.858 -11769.858
1030 1745.811 -2089.2242 -2089.2242 11082.566 -11082.566
1040 1685.4357 -2085.405 -2085.405 11445.939 -11445.939
1050 1707.5011 -2086.8974 -2086.8974 11100.371 -11100.371
1060 1724.8482 -2087.9616 -2087.9616 11269.4 -11269.4
1070 1692.6868 -2085.6478 -2085.6478 12051.435 -12051.435
1080 1719.7035 -2087.1262 -2087.1262 11754.86 -11754.86
1090 1717.3779 -2086.5464 -2086.5464 10848.031 -10848.031
1100 1695.2395 -2084.5596 -2084.5596 10561.497 -10561.497
Loop time of 0.404817 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
1100 1695.2395 -2084.5596 -2084.5596 10561.497 -10561.497
1118 1695.2395 -2213.2819 -2213.2819 8253.375 -8253.375
Loop time of 0.0784061 on 1 procs for 18 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
1100 1695.2395 -2085.5621 -2085.5621 12052.794 -12052.794
1110 1759.7112 -2089.1757 -2089.1757 11420.522 -11420.522
1120 1719.3433 -2085.7874 -2085.7874 12104.819 -12104.819
1130 1656.7898 -2080.863 -2080.863 11757.729 -11757.729
1140 1747.6443 -2085.9116 -2085.9116 11751.355 -11751.355
1150 1726.5994 -2083.4603 -2083.4603 11696.227 -11696.227
1160 1722.7632 -2082.097 -2082.097 11467.602 -11467.602
1170 1859.5796 -2089.9139 -2089.9139 11963.175 -11963.175
1180 1821.2672 -2086.1996 -2086.1996 13940.393 -13940.393
1190 1724.5395 -2078.7249 -2078.7249 15197.593 -15197.593
1200 1876.9955 -2087.6513 -2087.6513 14394.071 -14394.071
Loop time of 0.404942 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
1200 1876.9955 -2087.6513 -2087.6513 14394.071 -14394.071
1216 1876.9955 -2213.3001 -2213.3001 9506.9447 -9506.9447
Loop time of 0.069859 on 1 procs for 16 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
1200 1876.9955 -2087.6513 -2087.6513 14394.071 -14394.071
1210 1748.5027 -2086.5985 -2086.5985 13477.545 -13477.545
1220 1873.206 -2090.297 -2090.297 13690.876 -13690.876
1230 1799.2263 -2089.1831 -2089.1831 12948.344 -12948.344
1240 1755.6743 -2085.2322 -2085.2322 12896.7 -12896.7
1250 1799.916 -2084.1788 -2084.1788 12267.266 -12267.266
1260 1853.4935 -2086.658 -2086.658 13132.756 -13132.756
1270 1707.9154 -2079.6013 -2079.6013 12541.979 -12541.979
1280 1865.0991 -2082.8694 -2082.8694 12628.918 -12628.918
1290 1792.7221 -2081.4252 -2081.4252 11681.254 -11681.254
1300 1774.5114 -2078.7833 -2078.7833 12833.515 -12833.515
Loop time of 0.401082 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
1200 1774.5114 -2078.7833 -2078.7833 12833.515 -12833.515
1210 1880.2753 -2084.7794 -2084.7794 12098.962 -12098.962
1220 1818.22 -2079.765 -2079.765 11730.115 -11730.115
1230 1776.9489 -2076.1976 -2076.1976 12691.405 -12691.405
1240 1917.7053 -2084.6275 -2084.6275 12965.205 -12965.205
1250 1902.4756 -2082.8622 -2082.8622 12981.253 -12981.253
1260 1773.9381 -2073.7791 -2073.7791 13163.414 -13163.414
1270 1831.2137 -2076.9757 -2076.9757 12749.983 -12749.983
1280 1909.2985 -2081.5636 -2081.5636 12187.88 -12187.88
1290 1783.9267 -2072.8303 -2072.8303 12773.94 -12773.94
1300 1796.286 -2073.217 -2073.217 12103.505 -12103.505
Loop time of 0.406408 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
1300 1796.286 -2073.217 -2073.217 12103.505 -12103.505
1316 1796.286 -2213.2427 -2213.2427 8948.5426 -8948.5426
Loop time of 0.0667951 on 1 procs for 16 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
1300 1796.286 -2087.163 -2087.163 12898.861 -12898.861
1310 1822.9931 -2088.4635 -2088.4635 13268.024 -13268.024
1320 1786.9809 -2085.6534 -2085.6534 11674.271 -11674.271
1330 1790.1957 -2085.4338 -2085.4338 11382.56 -11382.56
1340 1726.7764 -2080.7832 -2080.7832 11763.011 -11763.011
1350 1765.8778 -2082.8376 -2082.8376 11233.94 -11233.94
1360 1774.2034 -2082.7941 -2082.7941 10282.68 -10282.68
1370 1666.6126 -2075.0672 -2075.0672 10548.535 -10548.535
1380 1680.5297 -2075.2375 -2075.2375 11659.582 -11659.582
1390 1793.4394 -2081.7681 -2081.7681 12448.884 -12448.884
1400 1905.2561 -2088.1648 -2088.1648 13379.381 -13379.381
Loop time of 0.405197 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
1400 1905.2561 -2088.1648 -2088.1648 13379.381 -13379.381
1420 1905.2561 -2213.3144 -2213.3144 9698.8994 -9698.8994
Loop time of 0.0954158 on 1 procs for 20 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
1400 1905.2561 -2088.1648 -2088.1648 13379.381 -13379.381
1410 1774.4051 -2079.5711 -2079.5711 13488.205 -13488.205
1420 1829.4154 -2080.5978 -2080.5978 13751.25 -13751.25
1430 1851.2033 -2083.0872 -2083.0872 12498.845 -12498.845
1440 1755.8872 -2079.3406 -2079.3406 12452.402 -12452.402
1450 1804.3802 -2078.759 -2078.759 13993.109 -13993.109
1460 1884.3691 -2083.448 -2083.448 13170.851 -13170.851
1470 1839.897 -2085.2586 -2085.2586 13423.334 -13423.334
1480 1851.4486 -2087.8651 -2087.8651 13518.48 -13518.48
1490 1815.1706 -2088.1191 -2088.1191 13198.588 -13198.588
1500 1796.5751 -2087.1636 -2087.1636 13390.796 -13390.796
Loop time of 0.404774 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
1400 1796.5751 -2087.1636 -2087.1636 13390.796 -13390.796
1410 1844.0954 -2089.5757 -2089.5757 12213.93 -12213.93
1420 1722.6248 -2080.8706 -2080.8706 11975.191 -11975.191
1430 1711.5694 -2079.4182 -2079.4182 12007.431 -12007.431
1440 1807.4864 -2084.8985 -2084.8985 11651.207 -11651.207
1450 1841.0046 -2086.2416 -2086.2416 11994.885 -11994.885
1460 1703.9208 -2076.3752 -2076.3752 12914.67 -12914.67
1470 1751.6279 -2078.6616 -2078.6616 12681.322 -12681.322
1480 1923.0387 -2088.9994 -2088.9994 12267.054 -12267.054
1490 1910.9354 -2087.3393 -2087.3393 12875.768 -12875.768
1500 1814.3345 -2080.2802 -2080.2802 13742.56 -13742.56
Loop time of 0.408207 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
1500 1814.3345 -2080.2802 -2080.2802 13742.56 -13742.56
1520 1814.3345 -2213.2885 -2213.2885 9068.2013 -9068.2013
Loop time of 0.0946791 on 1 procs for 20 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
1500 1814.3345 -2080.2802 -2080.2802 13742.56 -13742.56
1510 1861.5673 -2082.7836 -2082.7836 13474.394 -13474.394
1520 1809.7911 -2078.8033 -2078.8033 12818.516 -12818.516
1530 1755.2845 -2074.6788 -2074.6788 12301.065 -12301.065
1540 1845.1966 -2080.0437 -2080.0437 12087.827 -12087.827
1550 1860.4567 -2080.5052 -2080.5052 11942.542 -11942.542
1560 1801.4846 -2076.1483 -2076.1483 12428.07 -12428.07
1570 1816.1026 -2076.6626 -2076.6626 13366.05 -13366.05
1580 1889.0795 -2081.0577 -2081.0577 13579.026 -13579.026
1590 1816.7327 -2075.9316 -2075.9316 12993.355 -12993.355
1600 1881.7661 -2079.9497 -2079.9497 13154.519 -13154.519
Loop time of 0.411647 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
1600 1881.7661 -2079.9497 -2079.9497 13154.519 -13154.519
1620 1881.7661 -2213.3208 -2213.3208 9538.9205 -9538.9205
Loop time of 0.0900459 on 1 procs for 20 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
1600 1881.7661 -2079.9497 -2079.9497 13154.519 -13154.519
1610 1835.3737 -2076.6779 -2076.6779 12898.536 -12898.536
1620 1828.8122 -2076.0976 -2076.0976 12367.521 -12367.521
1630 1909.4557 -2081.3267 -2081.3267 12174.734 -12174.734
1640 1860.7602 -2078.1358 -2078.1358 12273.383 -12273.383
1650 1846.435 -2077.312 -2077.312 12169.973 -12169.973
1660 1893.7748 -2080.6316 -2080.6316 13083.049 -13083.049
1670 1910.9077 -2082.0981 -2082.0981 13382.159 -13382.159
1680 1825.8649 -2076.9434 -2076.9434 14129.966 -14129.966
1690 1824.78 -2077.3787 -2077.3787 13962.169 -13962.169
1700 1847.4368 -2079.4239 -2079.4239 13743.769 -13743.769
Loop time of 0.411496 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
1700 1847.4368 -2079.4239 -2079.4239 13743.769 -13743.769
1719 1847.4368 -2213.3063 -2213.3063 9303.0343 -9303.0343
Loop time of 0.0843339 on 1 procs for 19 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
1700 1847.4368 -2087.6647 -2087.6647 12760.942 -12760.942
1710 1734.6814 -2080.7937 -2080.7937 12962.211 -12962.211
1720 1710.2016 -2079.6676 -2079.6676 12111.814 -12111.814
1730 1767.796 -2083.8521 -2083.8521 11760.429 -11760.429
1740 1830.6146 -2088.3603 -2088.3603 12100.287 -12100.287
1750 1818.6121 -2087.9665 -2087.9665 12487.462 -12487.462
1760 1800.3385 -2087.1855 -2087.1855 12277.436 -12277.436
1770 1794.2396 -2087.2142 -2087.2142 11879.932 -11879.932
1780 1758.3735 -2085.267 -2085.267 11711.265 -11711.265
1790 1690.8403 -2081.1557 -2081.1557 11307.898 -11307.898
1800 1705.9352 -2082.3754 -2082.3754 11796.945 -11796.945
Loop time of 0.402617 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
1800 1705.9352 -2082.3754 -2082.3754 11796.945 -11796.945
1817 1705.9352 -2213.2953 -2213.2953 8328.1057 -8328.1057
Loop time of 0.073926 on 1 procs for 17 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
1800 1705.9352 -2086.3241 -2086.3241 13691.613 -13691.613
1810 1838.3444 -2095.2285 -2095.2285 13740.51 -13740.51
1820 1659.2342 -2083.5493 -2083.5493 13816.697 -13816.697
1830 1764.203 -2090.5078 -2090.5078 11818.545 -11818.545
1840 1824.5859 -2094.4771 -2094.4771 11689.913 -11689.913
1850 1554.2092 -2076.5765 -2076.5765 13114.216 -13114.216
1860 1621.3196 -2080.7337 -2080.7337 12821.904 -12821.904
1870 1819.436 -2093.2901 -2093.2901 11422.922 -11422.922
1880 1647.8199 -2081.3802 -2081.3802 12649.571 -12649.571
1890 1708.729 -2084.7107 -2084.7107 13622.22 -13622.22
1900 2016.2792 -2104.1532 -2104.1532 14301.182 -14301.182
Loop time of 0.405959 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
1900 2016.2792 -2104.1532 -2104.1532 14301.182 -14301.182
1918 2016.2792 -2213.3036 -2213.3036 10463.653 -10463.653
Loop time of 0.081908 on 1 procs for 18 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
1900 2016.2792 -2104.1532 -2104.1532 14301.182 -14301.182
1910 1774.0282 -2082.7355 -2082.7355 13427.246 -13427.246
1920 1907.071 -2089.0563 -2089.0563 13241.652 -13241.652
1930 1807.249 -2088.8683 -2088.8683 12954.733 -12954.733
1940 1759.8304 -2085.5703 -2085.5703 12719.331 -12719.331
1950 1879.4877 -2090.1659 -2090.1659 13108.619 -13108.619
1960 1732.6399 -2085.1217 -2085.1217 12090.042 -12090.042
1970 1805.7391 -2084.8602 -2084.8602 13047.636 -13047.636
1980 1762.2623 -2081.7323 -2081.7323 12136.361 -12136.361
1990 1888.198 -2086.8875 -2086.8875 13081.416 -13081.416
2000 1716.0072 -2080.7323 -2080.7323 12593.867 -12593.867
Loop time of 0.404363 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
1900 1716.0072 -2080.7323 -2080.7323 12593.867 -12593.867
1910 1758.3173 -2082.8511 -2082.8511 12427.317 -12427.317
1920 1805.2325 -2085.1868 -2085.1868 12757.457 -12757.457
1930 1792.9618 -2083.619 -2083.619 13503.347 -13503.347
1940 1801.1953 -2083.4074 -2083.4074 14112.753 -14112.753
1950 1836.0788 -2084.96 -2084.96 14151.387 -14151.387
1960 1856.2673 -2085.5891 -2085.5891 14431.077 -14431.077
1970 1838.7353 -2083.8002 -2083.8002 14410.454 -14410.454
1980 1858.3026 -2084.5287 -2084.5287 13894.657 -13894.657
1990 1869.6109 -2084.7899 -2084.7899 13517.649 -13517.649
2000 1762.9686 -2077.3419 -2077.3419 13790.214 -13790.214
Loop time of 0.407885 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
2000 1762.9686 -2077.3419 -2077.3419 13790.214 -13790.214
2018 1762.9686 -2213.2744 -2213.2744 8719.7774 -8719.7774
Loop time of 0.0792379 on 1 procs for 18 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
2000 1762.9686 -2077.3419 -2077.3419 13790.214 -13790.214
2010 1796.1726 -2079.1236 -2079.1236 12969.272 -12969.272
2020 1800.824 -2078.9819 -2078.9819 12656.681 -12656.681
2030 1811.9419 -2079.2717 -2079.2717 13576.195 -13576.195
2040 1863.0719 -2082.2086 -2082.2086 13853.312 -13853.312
2050 1835.4719 -2080.0147 -2080.0147 13560.299 -13560.299
2060 1799.3276 -2077.3053 -2077.3053 13140.862 -13140.862
2070 1832.1323 -2079.1555 -2079.1555 13428.16 -13428.16
2080 1835.2331 -2079.0662 -2079.0662 14276.717 -14276.717
2090 1853.312 -2080.0085 -2080.0085 15653.942 -15653.942
2100 1893.7057 -2082.4893 -2082.4893 16495.887 -16495.887
Loop time of 0.409262 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
2100 1893.7057 -2082.4893 -2082.4893 16495.887 -16495.887
2120 1893.7057 -2213.31 -2213.31 9619.9705 -9619.9705
Loop time of 0.0854859 on 1 procs for 20 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
2100 1893.7057 -2082.9637 -2082.9637 12149.243 -12149.243
2110 1847.0322 -2079.8 -2079.8 12700.583 -12700.583
2120 1835.3859 -2079.0245 -2079.0245 13703.719 -13703.719
2130 1844.4758 -2079.6664 -2079.6664 13897.973 -13897.973
2140 1842.7138 -2079.6526 -2079.6526 13308.603 -13308.603
2150 1850.2994 -2080.32 -2080.32 11761.856 -11761.856
2160 1860.4543 -2081.2432 -2081.2432 10575.83 -10575.83
2170 1801.9382 -2077.7054 -2077.7054 11552.34 -11552.34
2180 1778.4832 -2076.5031 -2076.5031 12291.924 -12291.924
2190 1795.7049 -2077.9669 -2077.9669 12905.545 -12905.545
2200 1866.2313 -2082.9789 -2082.9789 13325.123 -13325.123
Loop time of 0.409066 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
2200 1866.2313 -2082.9789 -2082.9789 13325.123 -13325.123
2218 1866.2313 -2213.2747 -2213.2747 9436.2647 -9436.2647
Loop time of 0.0764279 on 1 procs for 18 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
2200 1866.2313 -2082.9789 -2082.9789 13325.123 -13325.123
2210 1729.0096 -2086.7073 -2086.7073 12711.066 -12711.066
2220 1783.5771 -2085.9921 -2085.9921 12412.287 -12412.287
2230 1773.7489 -2084.6394 -2084.6394 11920.082 -11920.082
2240 1806.9924 -2085.4997 -2085.4997 11931.524 -11931.524
2250 1778.4199 -2084.4813 -2084.4813 11718.165 -11718.165
2260 1741.7805 -2081.0247 -2081.0247 12896.049 -12896.049
2270 1802.0248 -2081.5405 -2081.5405 12806.844 -12806.844
2280 1761.0213 -2079.345 -2079.345 12392.424 -12392.424
2290 1874.7024 -2084.6806 -2084.6806 12967.892 -12967.892
2300 1773.016 -2083.3451 -2083.3451 12557.602 -12557.602
Loop time of 0.40381 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
2200 1773.016 -2083.3451 -2083.3451 12557.602 -12557.602
2210 1754.3271 -2082.5393 -2082.5393 11845.323 -11845.323
2220 1735.7856 -2081.7019 -2081.7019 11197.024 -11197.024
2230 1745.7899 -2082.6878 -2082.6878 10290.088 -10290.088
2240 1783.4029 -2085.46 -2085.46 10398.174 -10398.174
2250 1746.2925 -2083.2856 -2083.2856 11606.704 -11606.704
2260 1674.989 -2078.787 -2078.787 11477.748 -11477.748
2270 1742.8803 -2083.3535 -2083.3535 11728.746 -11728.746
2280 1813.742 -2088.0471 -2088.0471 11766.749 -11766.749
2290 1761.9893 -2084.6481 -2084.6481 12135.212 -12135.212
2300 1755.15 -2084.1763 -2084.1763 12421.621 -12421.621
Loop time of 0.407367 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
2300 1755.15 -2084.1763 -2084.1763 12421.621 -12421.621
2319 1755.15 -2213.3127 -2213.3127 8669.1055 -8669.1055
Loop time of 0.0857038 on 1 procs for 19 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
2300 1755.15 -2088.3257 -2088.3257 12659.396 -12659.396
2310 1735.1121 -2086.8898 -2086.8898 14017.441 -14017.441
2320 1857.3817 -2094.7844 -2094.7844 12919.269 -12919.269
2330 1764.5002 -2088.4745 -2088.4745 12758.723 -12758.723
2340 1708.2044 -2084.5448 -2084.5448 11530.545 -11530.545
2350 1716.2798 -2084.719 -2084.719 10611.498 -10611.498
2360 1632.8877 -2078.6877 -2078.6877 10248.136 -10248.136
2370 1591.7472 -2075.1919 -2075.1919 9695.8831 -9695.8831
2380 1748.7695 -2084.4218 -2084.4218 9907.1273 -9907.1273
2390 1827.6168 -2088.2146 -2088.2146 12557.45 -12557.45
2400 1815.5439 -2085.9837 -2085.9837 14539.65 -14539.65
Loop time of 0.40522 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
2400 1815.5439 -2085.9837 -2085.9837 14539.65 -14539.65
2417 1815.5439 -2213.2814 -2213.2814 9082.4404 -9082.4404
Loop time of 0.0751441 on 1 procs for 17 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
2400 1815.5439 -2085.9837 -2085.9837 14539.65 -14539.65
2410 1915.7237 -2089.7427 -2089.7427 12770.389 -12770.389
2420 1741.0374 -2084.6412 -2084.6412 12546.024 -12546.024
2430 1816.3609 -2084.5695 -2084.5695 12524.307 -12524.307
2440 1850.7859 -2086.893 -2086.893 11932.085 -11932.085
2450 1732.0764 -2081.5387 -2081.5387 12544.68 -12544.68
2460 1886.2676 -2086.439 -2086.439 12818.408 -12818.408
2470 1721.8063 -2080.6343 -2080.6343 12242.28 -12242.28
2480 1829.9216 -2081.9868 -2081.9868 12875.094 -12875.094
2490 1798.9573 -2081.3591 -2081.3591 13283.118 -13283.118
2500 1877.6923 -2085.9938 -2085.9938 13717.146 -13717.146
Loop time of 0.401486 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
2400 1877.6923 -2085.9938 -2085.9938 13717.146 -13717.146
2410 1805.3325 -2080.8416 -2080.8416 14579.288 -14579.288
2420 1801.1726 -2080.2605 -2080.2605 14645.78 -14645.78
2430 1865.9245 -2084.2472 -2084.2472 13799.716 -13799.716
2440 1878.9171 -2084.9185 -2084.9185 13701.347 -13701.347
2450 1790.8157 -2079.0088 -2079.0088 13198.167 -13198.167
2460 1801.8082 -2079.6593 -2079.6593 12804.796 -12804.796
2470 1797.2233 -2079.2783 -2079.2783 13932.587 -13932.587
2480 1769.52 -2077.3565 -2077.3565 13972.364 -13972.364
2490 1871.3543 -2083.9764 -2083.9764 13823.979 -13823.979
2500 1895.3668 -2085.5282 -2085.5282 14028.193 -14028.193
Loop time of 0.407277 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
2500 1895.3668 -2085.5282 -2085.5282 14028.193 -14028.193
2518 1895.3668 -2213.3171 -2213.3171 9633.2742 -9633.2742
Loop time of 0.0790908 on 1 procs for 18 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
2500 1895.3668 -2085.5282 -2085.5282 14028.193 -14028.193
2510 1869.8104 -2083.9504 -2083.9504 14491.442 -14491.442
2520 1803.0741 -2079.7291 -2079.7291 14019.189 -14019.189
2530 1823.1788 -2081.2743 -2081.2743 13635.326 -13635.326
2540 1800.2867 -2080.0035 -2080.0035 14010.572 -14010.572
2550 1828.9783 -2082.1575 -2082.1575 13714.394 -13714.394
2560 1881.6485 -2085.976 -2085.976 13058.642 -13058.642
2570 1772.4537 -2079.2027 -2079.2027 14080.862 -14080.862
2580 1805.2429 -2081.8195 -2081.8195 13640.15 -13640.15
2590 1869.3324 -2086.5742 -2086.5742 13047.134 -13047.134
2600 1796.867 -2082.4373 -2082.4373 13224.706 -13224.706
Loop time of 0.408489 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
2600 1796.867 -2082.4373 -2082.4373 13224.706 -13224.706
2618 1796.867 -2213.2937 -2213.2937 8958.1498 -8958.1498
Loop time of 0.071373 on 1 procs for 18 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
2600 1796.867 -2082.4373 -2082.4373 13224.706 -13224.706
2610 1802.6643 -2083.342 -2083.342 11994.785 -11994.785
2620 1803.9207 -2084.414 -2084.414 11635.164 -11635.164
2630 1768.4732 -2083.216 -2083.216 11195.997 -11195.997
2640 1817.2134 -2085.3387 -2085.3387 11833.757 -11833.757
2650 1850.0509 -2089.7668 -2089.7668 11362.265 -11362.265
2660 1708.7921 -2084.9337 -2084.9337 10409.943 -10409.943
2670 1752.9645 -2083.0376 -2083.0376 10171.006 -10171.006
2680 1733.6815 -2079.8226 -2079.8226 11759.735 -11759.735
2690 1777.3162 -2079.4658 -2079.4658 11285.073 -11285.073
2700 1780.1943 -2079.2519 -2079.2519 12213.79 -12213.79
Loop time of 0.398683 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
2600 1780.1943 -2079.2519 -2079.2519 12213.79 -12213.79
2610 1746.9585 -2078.0203 -2078.0203 13027.376 -13027.376
2620 1857.2789 -2086.1675 -2086.1675 13264.945 -13264.945
2630 1891.2521 -2089.2926 -2089.2926 12670.387 -12670.387
2640 1796.637 -2083.905 -2083.905 12478.573 -12478.573
2650 1741.2685 -2080.9505 -2080.9505 12317.517 -12317.517
2660 1805.5574 -2085.7371 -2085.7371 12106.005 -12106.005
2670 1771.8977 -2083.9694 -2083.9694 12962.924 -12962.924
2680 1711.4061 -2080.288 -2080.288 14121.523 -14121.523
2690 1858.0183 -2090.1762 -2090.1762 13291.477 -13291.477
2700 1838.5355 -2089.1089 -2089.1089 13702.529 -13702.529
Loop time of 0.40357 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
2700 1838.5355 -2089.1089 -2089.1089 13702.529 -13702.529
2718 1838.5355 -2213.2859 -2213.2859 9238.9808 -9238.9808
Loop time of 0.0832069 on 1 procs for 18 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
2700 1838.5355 -2089.1089 -2089.1089 13702.529 -13702.529
2710 1774.7686 -2085.128 -2085.128 13300.887 -13300.887
2720 1839.3884 -2089.5765 -2089.5765 13322.286 -13322.286
2730 1848.9734 -2090.4311 -2090.4311 12381.462 -12381.462
2740 1652.1266 -2077.6365 -2077.6365 11722.405 -11722.405
2750 1673.4321 -2079.0859 -2079.0859 10859.387 -10859.387
2760 1736.9228 -2083.1572 -2083.1572 10327.062 -10327.062
2770 1735.8621 -2082.8831 -2082.8831 11471.944 -11471.944
2780 1802.6631 -2087.0351 -2087.0351 11844.925 -11844.925
2790 1797.5979 -2086.437 -2086.437 12050.594 -12050.594
2800 1772.4707 -2084.5278 -2084.5278 12885.826 -12885.826
Loop time of 0.403676 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
2800 1772.4707 -2084.5278 -2084.5278 12885.826 -12885.826
2817 1772.4707 -2213.2994 -2213.2994 8788.498 -8788.498
Loop time of 0.0722508 on 1 procs for 17 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
2800 1772.4707 -2084.5278 -2084.5278 12885.826 -12885.826
2810 1788.0397 -2085.2771 -2085.2771 13123.426 -13123.426
2820 1831.2464 -2087.8518 -2087.8518 12673.574 -12673.574
2830 1743.4114 -2081.7896 -2081.7896 13066.36 -13066.36
2840 1755.5989 -2082.2867 -2082.2867 13031.535 -13031.535
2850 1871.213 -2089.5583 -2089.5583 13088.117 -13088.117
2860 1820.5044 -2085.8967 -2085.8967 14054.93 -14054.93
2870 1804.2018 -2084.5559 -2084.5559 14287.296 -14287.296
2880 1838.5761 -2086.5677 -2086.5677 13105.322 -13105.322
2890 1732.0926 -2079.2996 -2079.2996 12808.515 -12808.515
2900 1687.6862 -2076.0516 -2076.0516 11823.268 -11823.268
Loop time of 0.426849 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
2900 1687.6862 -2076.0516 -2076.0516 11823.268 -11823.268
2917 1687.6862 -2213.258 -2213.258 8204.3947 -8204.3947
Loop time of 0.0782161 on 1 procs for 17 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
2900 1687.6862 -2076.0516 -2076.0516 11823.268 -11823.268
2910 1810.0632 -2083.67 -2083.67 10723.225 -10723.225
2920 1748.9758 -2079.0976 -2079.0976 12060.108 -12060.108
2930 1751.5908 -2078.6657 -2078.6657 12791.425 -12791.425
2940 1838.7023 -2083.6783 -2083.6783 13260.13 -13260.13
2950 1883.1789 -2085.8378 -2085.8378 13268.034 -13268.034
2960 1821.7492 -2081.0324 -2081.0324 13707.928 -13707.928
2970 1899.0671 -2085.3931 -2085.3931 14048.633 -14048.633
2980 1923.3543 -2086.2737 -2086.2737 14581.955 -14581.955
2990 1793.3815 -2077.0772 -2077.0772 14609.194 -14609.194
3000 1853.0706 -2080.3808 -2080.3808 14059.98 -14059.98
Loop time of 0.405199 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
3000 1853.0706 -2080.3808 -2080.3808 14059.98 -14059.98
3019 1853.0706 -2213.315 -2213.315 9346.3242 -9346.3242
Loop time of 0.082895 on 1 procs for 19 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
3000 1853.0706 -2080.3808 -2080.3808 14059.98 -14059.98
Loop time of 13.0158 on 1 procs for 19 steps with 511 atoms
PRD stats:
Dephase time (%) = 2.81303 (21.6124)
Dynamics time (%) = 8.15515 (62.6557)
Quench time (%) = 1.6044 (12.3266)
Other time (%) = 0.272033 (2.09002)
Nlocal: 511 ave 511 max 511 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Nghost: 1017 ave 1017 max 1017 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Neighs: 0 ave 0 max 0 min
Histogram: 1 0 0 0 0 0 0 0 0 0
FullNghs: 13428 ave 13428 max 13428 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Total # of neighbors = 13428
Ave neighs/atom = 26.2779
Neighbor list builds = 97
Dangerous builds = 0

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LAMMPS (10 Sep 2010)
Running on 4 partitions of processors
Step CPU Clock Event Correlated Coincident Replica
1000 0.000 0 0 0 0 0
1100 0.903 400 1 0 1 0
1300 2.312 900 2 0 1 3
1700 4.773 2200 3 0 1 2
1800 5.266 2300 4 1 1 2
2100 7.206 3200 5 0 1 0
2300 8.650 3700 6 0 1 2
2500 10.065 4200 7 0 1 1
3000 13.010 5900 8 0 2 1
Loop time of 13.0158 on 4 procs for 2000 steps with 511 atoms

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LAMMPS (10 Sep 2010)
Processor partition = 2
# Parallel replica dynamics model for a single vacancy in bulk Si
# events occur when a neighboring atom diffuses to the vacant site
# run this on multiple partitions as
# mpirun -np 4 lmp_g++ -partition 4x1 -in in.prd
units metal
atom_style atomic
atom_modify map array
boundary p p p
atom_modify sort 0 0.0
# temperature
variable t equal 1800.0
# coordination number cutoff
variable r equal 2.835
# minimization parameters
variable etol equal 1.0e-5
variable ftol equal 1.0e-5
variable maxiter equal 100
variable maxeval equal 100
variable dmax equal 1.0e-1
# diamond unit cell
variable a equal 5.431
lattice custom $a a1 1.0 0.0 0.0 a2 0.0 1.0 0.0 a3 0.0 0.0 1.0 basis 0.0 0.0 0.0 basis 0.0 0.5 0.5 basis 0.5 0.0 0.5 basis 0.5 0.5 0.0 basis 0.25 0.25 0.25 basis 0.25 0.75 0.75 basis 0.75 0.25 0.75 basis 0.75 0.75 0.25
lattice custom 5.431 a1 1.0 0.0 0.0 a2 0.0 1.0 0.0 a3 0.0 0.0 1.0 basis 0.0 0.0 0.0 basis 0.0 0.5 0.5 basis 0.5 0.0 0.5 basis 0.5 0.5 0.0 basis 0.25 0.25 0.25 basis 0.25 0.75 0.75 basis 0.75 0.25 0.75 basis 0.75 0.75 0.25
Lattice spacing in x,y,z = 5.431 5.431 5.431
region myreg block 0 4 0 4 0 4
create_box 1 myreg
Created orthogonal box = (0 0 0) to (21.724 21.724 21.724)
1 by 1 by 1 processor grid
create_atoms 1 region myreg
Created 512 atoms
mass 1 28.06
group Si type 1
512 atoms in group Si
velocity all create $t 5287287 mom yes rot yes dist gaussian
velocity all create 1800 5287287 mom yes rot yes dist gaussian
# make a vacancy
group del id 300
1 atoms in group del
delete_atoms group del
Deleted 1 atoms, new total = 511
pair_style sw
pair_coeff * * Si.sw Si
thermo 10
fix 1 all nvt temp $t $t 0.1
fix 1 all nvt temp 1800 $t 0.1
fix 1 all nvt temp 1800 1800 0.1
timestep 1.0e-3
neighbor 1.0 bin
neigh_modify every 1 delay 10 check yes
# equilibrate
run 1000
Memory usage per processor = 1.70934 Mbytes
Step Temp E_pair E_mol TotEng Press
0 1802.5039 -2211.666 0 -2092.8401 12351.692
10 996.01982 -2158.3093 0 -2092.649 14285.475
20 590.09928 -2131.1531 0 -2092.2521 12113.964
30 1033.01 -2159.2522 0 -2091.1534 6860.4116
40 724.76581 -2137.281 0 -2089.5025 5999.4372
50 489.66604 -2120.8082 0 -2088.5281 6403.4234
60 960.70653 -2150.7394 0 -2087.407 5687.324
70 908.41498 -2145.7665 0 -2085.8813 8220.9655
80 796.82286 -2137.1227 0 -2084.5941 11307.153
90 1245.9045 -2164.9841 0 -2082.8507 11282.071
100 1083.0647 -2152.0805 0 -2080.682 12015.018
110 846.80459 -2134.8152 0 -2078.9916 11904.208
120 1130.5577 -2151.6282 0 -2077.0988 9631.0553
130 1011.5223 -2141.5579 0 -2074.8757 9674.727
140 828.13015 -2127.6781 0 -2073.0856 10663.754
150 1213.6842 -2151.0205 0 -2071.0112 9358.162
160 1118.1701 -2142.223 0 -2068.5102 9705.042
170 815.94964 -2120.3781 0 -2066.5885 11111.781
180 1149.9499 -2140.3762 0 -2064.5684 10362.874
190 1265.3227 -2145.3133 0 -2061.8998 10208.885
200 967.96035 -2123.4032 0 -2059.5927 11429.676
210 1154.8198 -2133.5775 0 -2057.4487 10697.231
220 1309.6664 -2141.0968 0 -2054.7601 10123.484
230 1123.114 -2126.2814 0 -2052.2427 11010.813
240 1262.1761 -2133.0492 0 -2049.8432 10358.728
250 1387.1979 -2138.5224 0 -2047.0746 9224.1203
260 1099.3995 -2117.0127 0 -2044.5373 9902.009
270 1119.6867 -2116.1281 0 -2042.3154 9925.7178
280 1412.0178 -2132.6875 0 -2039.6036 8270.5884
290 1321.0773 -2123.8202 0 -2036.7313 8809.0223
300 1216.0708 -2114.3828 0 -2034.2162 9035.0512
310 1359.9122 -2121.2409 0 -2031.5918 7895.5635
320 1322.8642 -2116.0313 0 -2028.8245 8661.9299
330 1272.4262 -2110.1033 0 -2026.2215 10341.489
340 1451.8803 -2119.1983 0 -2023.4865 10343.627
350 1488.8525 -2118.6967 0 -2020.5476 10786.017
360 1330.5957 -2105.5746 0 -2017.8582 11501.105
370 1452.1996 -2110.9637 0 -2015.2308 11534.951
380 1598.8893 -2117.7127 0 -2012.3096 12209.282
390 1593.9074 -2114.5133 0 -2009.4386 13050.071
400 1580.9099 -2110.9274 0 -2006.7096 12007.149
410 1499.3026 -2102.9454 0 -2004.1074 10088.553
420 1368.9435 -2091.8877 0 -2001.6433 8465.3083
430 1297.2041 -2084.7532 0 -1999.2381 7269.5758
440 1450.1063 -2092.2353 0 -1996.6405 7033.8027
450 1534.8081 -2094.9394 0 -1993.7608 9081.5997
460 1556.639 -2093.5424 0 -1990.9246 12400.015
470 1803.1464 -2106.8774 0 -1988.0092 14192.515
480 1865.4976 -2108.05 0 -1985.0714 16740.251
490 1809.642 -2101.8102 0 -1982.5137 17670.617
500 1875.0318 -2103.7815 0 -1980.1744 15726.048
510 1835.5401 -2099.0223 0 -1978.0186 13590.87
520 1592.2743 -2081.0889 0 -1976.1219 12889.185
530 1621.098 -2081.1646 0 -1974.2975 12097.358
540 1787.4042 -2090.0335 0 -1972.203 11006.55
550 1629.769 -2077.5584 0 -1970.1196 11828.612
560 1633.9967 -2075.8478 0 -1968.1303 13013.747
570 1867.8884 -2089.0683 0 -1965.9321 12589.17
580 1897.3799 -2088.7925 0 -1963.7122 12142.767
590 1675.1213 -2072.2289 0 -1961.8004 12668.905
600 1852.5707 -2082.1073 0 -1959.9809 11872.082
610 1895.1634 -2083.0113 0 -1958.0771 12732.408
620 1759.7637 -2072.4168 0 -1956.4085 14720.014
630 1867.9005 -2077.9673 0 -1954.8303 15446.507
640 1882.4501 -2077.3643 0 -1953.2682 16189.673
650 1830.0215 -2072.5142 0 -1951.8743 15952.621
660 1989.6605 -2081.7336 0 -1950.5699 14441.731
670 2019.3348 -2082.5674 0 -1949.4475 13093.568
680 1806.7881 -2067.7448 0 -1948.6365 13695.415
690 1860.9944 -2070.6335 0 -1947.9518 13711.769
700 2035.4273 -2081.5085 0 -1947.3277 13969.607
710 1924.1115 -2073.7877 0 -1946.9451 14669.272
720 1925.0897 -2073.7075 0 -1946.8005 14665.913
730 1979.7127 -2077.3504 0 -1946.8425 14625.754
740 1932.6041 -2074.5197 0 -1947.1173 15051.1
750 1873.6645 -2071.0745 0 -1947.5575 14804.579
760 1916.3833 -2074.4703 0 -1948.1372 13868.322
770 1893.2199 -2073.6709 0 -1948.8647 14320.209
780 1868.0258 -2072.8444 0 -1949.6991 13913.255
790 1903.3142 -2076.1305 0 -1950.6589 13542.781
800 1852.3079 -2073.8193 0 -1951.7102 13663.021
810 1874.015 -2076.3795 0 -1952.8394 12583.329
820 1897.7242 -2079.181 0 -1954.0779 12629.436
830 1810.9511 -2074.7734 0 -1955.3907 13791.194
840 1751.9411 -2072.1105 0 -1956.6178 14705.479
850 1904.2872 -2083.4009 0 -1957.8652 14745.454
860 1916.5803 -2085.6068 0 -1959.2607 14829.039
870 1838.661 -2081.9371 0 -1960.7276 14932.396
880 1847.5879 -2084.017 0 -1962.219 14581.23
890 1850.4293 -2085.7191 0 -1963.7338 13109.312
900 1822.6233 -2085.4213 0 -1965.2691 13769.397
910 1786.0307 -2084.4806 0 -1966.7407 13450.462
920 1823.0469 -2088.3777 0 -1968.1976 12242.2
930 1731.0515 -2083.7104 0 -1969.5949 11686.755
940 1635.923 -2078.6209 0 -1970.7765 11861.596
950 1731.8445 -2085.9611 0 -1971.7933 11269.332
960 1735.3582 -2087.1207 0 -1972.7212 11587.883
970 1672.4435 -2083.7706 0 -1973.5187 12217.898
980 1703.4917 -2086.4744 0 -1974.1757 12431.952
990 1733.7211 -2089.007 0 -1974.7155 12829.553
1000 1764.9513 -2091.5262 0 -1975.1759 13614.2
Loop time of 3.86202 on 1 procs for 1000 steps with 511 atoms
Pair time (%) = 3.77494 (97.745)
Neigh time (%) = 0.0425203 (1.10098)
Comm time (%) = 0.0136588 (0.353668)
Outpt time (%) = 0.00129437 (0.0335154)
Other time (%) = 0.0296147 (0.766818)
Nlocal: 511 ave 511 max 511 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Nghost: 1017 ave 1017 max 1017 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Neighs: 0 ave 0 max 0 min
Histogram: 1 0 0 0 0 0 0 0 0 0
FullNghs: 13440 ave 13440 max 13440 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Total # of neighbors = 13440
Ave neighs/atom = 26.3014
Neighbor list builds = 44
Dangerous builds = 0
# only output atoms near vacancy
compute coord all coord/atom $r
compute coord all coord/atom 2.835
dump events all custom 1 dump.prd id type x y z
dump_modify events thresh c_coord != 4
compute patom all pe/atom
compute pe all reduce sum c_patom
compute satom all stress/atom
compute str all reduce sum c_satom[1] c_satom[2] c_satom[3]
variable press equal (c_str[1]+c_str[2]+c_str[3])/(3*vol)
thermo_style custom step temp pe c_pe press v_press
compute 1 all event/displace 0.5
prd 2000 100 10 10 100 1 54985 temp $t min ${etol} ${ftol} ${maxiter} ${maxeval} vel all uniform
prd 2000 100 10 10 100 1 54985 temp 1800 min ${etol} ${ftol} ${maxiter} ${maxeval} vel all uniform
prd 2000 100 10 10 100 1 54985 temp 1800 min 1e-05 ${ftol} ${maxiter} ${maxeval} vel all uniform
prd 2000 100 10 10 100 1 54985 temp 1800 min 1e-05 1e-05 ${maxiter} ${maxeval} vel all uniform
prd 2000 100 10 10 100 1 54985 temp 1800 min 1e-05 1e-05 100 ${maxeval} vel all uniform
prd 2000 100 10 10 100 1 54985 temp 1800 min 1e-05 1e-05 100 100 vel all uniform
Memory usage per processor = 3.42595 Mbytes
Step Temp PotEng pe Press press
1000 1764.9513 -2091.5262 -2091.5262 13614.2 -13614.2
1010 1764.9513 -2212.5976 -2212.5976 8682.8748 -8682.8748
1018 1764.9513 -2213.2997 -2213.2997 8735.7723 -8735.7723
Loop time of 0.0824111 on 1 procs for 18 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
1000 1764.9513 -2091.5262 -2091.5262 13614.2 -13614.2
1010 1819.2378 -2093.2474 -2093.2474 13531.715 -13531.715
1020 1813.3519 -2094.5984 -2094.5984 13263.815 -13263.815
1030 1860.9582 -2099.1408 -2099.1408 12526.032 -12526.032
1040 1719.5348 -2094.3594 -2094.3594 11973.442 -11973.442
1050 1747.6032 -2091.4086 -2091.4086 12303.295 -12303.295
1060 1712.9261 -2086.1105 -2086.1105 13343.858 -13343.858
1070 1803.4404 -2086.7641 -2086.7641 14986.719 -14986.719
1080 1781.4485 -2085.9398 -2085.9398 14338.369 -14338.369
1090 1820.0336 -2087.6573 -2087.6573 13616.057 -13616.057
1100 1715.8133 -2082.4654 -2082.4654 13193.661 -13193.661
Loop time of 0.399556 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
1000 1715.8133 -2082.4654 -2082.4654 13193.661 -13193.661
1010 1739.9691 -2084.3249 -2084.3249 12648.268 -12648.268
1020 1785.2788 -2087.5099 -2087.5099 12368.814 -12368.814
1030 1753.9701 -2085.612 -2085.612 12945.536 -12945.536
1040 1726.867 -2083.9236 -2083.9236 13616.716 -13616.716
1050 1821.8225 -2090.2246 -2090.2246 13092.097 -13092.097
1060 1815.5365 -2089.8567 -2089.8567 13780.034 -13780.034
1070 1724.7099 -2083.9132 -2083.9132 13602.863 -13602.863
1080 1754.4888 -2085.8575 -2085.8575 13133.622 -13133.622
1090 1793.6045 -2088.3564 -2088.3564 13163.32 -13163.32
1100 1727.8922 -2083.9031 -2083.9031 13038.694 -13038.694
Loop time of 0.40741 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
1100 1727.8922 -2083.9031 -2083.9031 13038.694 -13038.694
1118 1727.8922 -2213.2976 -2213.2976 8480.3214 -8480.3214
Loop time of 0.08149 on 1 procs for 18 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
1100 1727.8922 -2085.5621 -2085.5621 12277.055 -12277.055
1110 1756.6327 -2087.2841 -2087.2841 11368.553 -11368.553
1120 1701.1354 -2083.3707 -2083.3707 11164.561 -11164.561
1130 1649.8139 -2079.6229 -2079.6229 11450.441 -11450.441
1140 1699.8954 -2082.3909 -2082.3909 11535.348 -11535.348
1150 1765.3613 -2086.0313 -2086.0313 11925.995 -11925.995
1160 1732.4283 -2083.1024 -2083.1024 12804.169 -12804.169
1170 1770.4018 -2084.7946 -2084.7946 12978.113 -12978.113
1180 1832.0095 -2087.9893 -2087.9893 13155.054 -13155.054
1190 1775.2461 -2083.3846 -2083.3846 14138.08 -14138.08
1200 1912.8176 -2091.6206 -2091.6206 14075.801 -14075.801
Loop time of 0.400708 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
1200 1912.8176 -2091.6206 -2091.6206 14075.801 -14075.801
1219 1912.8176 -2213.323 -2213.323 9753.9239 -9753.9239
Loop time of 0.0879588 on 1 procs for 19 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
1200 1912.8176 -2091.6206 -2091.6206 14075.801 -14075.801
1210 1791.1869 -2089.4314 -2089.4314 13473.919 -13473.919
1220 1778.9267 -2087.2615 -2087.2615 13739.455 -13739.455
1230 1865.1198 -2090.7879 -2090.7879 12588.104 -12588.104
1240 1759.0389 -2087.3561 -2087.3561 12335.042 -12335.042
1250 1870.6206 -2091.2848 -2091.2848 12895.105 -12895.105
1260 1862.5179 -2094.7315 -2094.7315 12098.522 -12098.522
1270 1669.1055 -2085.4484 -2085.4484 11424.528 -11424.528
1280 1820.863 -2086.0862 -2086.0862 12314.591 -12314.591
1290 1835.1062 -2087.6906 -2087.6906 11781.843 -11781.843
1300 1817.4069 -2088.158 -2088.158 11477.319 -11477.319
Loop time of 0.400583 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
1200 1817.4069 -2088.158 -2088.158 11477.319 -11477.319
1210 1785.366 -2085.3845 -2085.3845 11333.481 -11333.481
1220 1735.7669 -2081.4513 -2081.4513 9901.2553 -9901.2553
1230 1682.6307 -2077.2188 -2077.2188 9626.947 -9626.947
1240 1728.0753 -2079.3709 -2079.3709 10498.108 -10498.108
1250 1815.6783 -2084.1815 -2084.1815 11957.739 -11957.739
1260 1812.1974 -2082.978 -2082.978 13040.779 -13040.779
1270 1793.5848 -2080.8035 -2080.8035 13075.548 -13075.548
1280 1858.6019 -2084.1626 -2084.1626 12031.094 -12031.094
1290 1873.3607 -2084.2555 -2084.2555 12440.634 -12440.634
1300 1855.6542 -2082.3133 -2082.3133 13072.26 -13072.26
Loop time of 0.404732 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
1300 1855.6542 -2082.3133 -2082.3133 13072.26 -13072.26
1319 1855.6542 -2213.3073 -2213.3073 9358.0717 -9358.0717
Loop time of 0.0833669 on 1 procs for 19 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
1300 1855.6542 -2087.163 -2087.163 13306.606 -13306.606
1310 1847.0104 -2085.9117 -2085.9117 13831.059 -13831.059
1320 1821.9089 -2083.6534 -2083.6534 13315.577 -13315.577
1330 1837.6483 -2084.1326 -2084.1326 12108.286 -12108.286
1340 1751.5492 -2077.923 -2077.923 11366.904 -11366.904
1350 1737.9508 -2076.4759 -2076.4759 10019.736 -10019.736
1360 1793.2086 -2079.484 -2079.484 9276.4821 -9276.4821
1370 1783.8893 -2078.2076 -2078.2076 10007.533 -10007.533
1380 1710.0898 -2072.6513 -2072.6513 11000.817 -11000.817
1390 1826.9639 -2079.6043 -2079.6043 11641.706 -11641.706
1400 1872.7191 -2081.8353 -2081.8353 13073.794 -13073.794
Loop time of 0.407897 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
1400 1872.7191 -2081.8353 -2081.8353 13073.794 -13073.794
1419 1872.7191 -2213.2913 -2213.2913 9474.1695 -9474.1695
Loop time of 0.083143 on 1 procs for 19 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
1400 1872.7191 -2081.8353 -2081.8353 13073.794 -13073.794
1410 1786.7702 -2081.1802 -2081.1802 13660.592 -13660.592
1420 1769.4554 -2078.4675 -2078.4675 13618.424 -13618.424
1430 1827.6814 -2079.5734 -2079.5734 13362.845 -13362.845
1440 1719.9736 -2073.5901 -2073.5901 13504.886 -13504.886
1450 1830.1696 -2074.8242 -2074.8242 14776.946 -14776.946
1460 1857.7603 -2077.899 -2077.899 13865.35 -13865.35
1470 1854.2545 -2080.7823 -2080.7823 12531.918 -12531.918
1480 1766.2046 -2077.8774 -2077.8774 12393.929 -12393.929
1490 1761.4143 -2074.6139 -2074.6139 13084.551 -13084.551
1500 1825.4626 -2075.5562 -2075.5562 13605.18 -13605.18
Loop time of 0.411314 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
1400 1825.4626 -2075.5562 -2075.5562 13605.18 -13605.18
1410 1884.0819 -2078.701 -2078.701 13442.359 -13442.359
1420 1872.6531 -2077.3178 -2077.3178 13573.731 -13573.731
1430 1872.973 -2076.8189 -2076.8189 13508.422 -13508.422
1440 1878.5594 -2076.7714 -2076.7714 12908.412 -12908.412
1450 1850.5046 -2074.5967 -2074.5967 13159.712 -13159.712
1460 1914.1141 -2078.5628 -2078.5628 12407.852 -12407.852
1470 1857.2255 -2074.7062 -2074.7062 12005.587 -12005.587
1480 1779.7172 -2069.5645 -2069.5645 11735.8 -11735.8
1490 1835.6711 -2073.2281 -2073.2281 11433.734 -11433.734
1500 1886.5398 -2076.6018 -2076.6018 12767.753 -12767.753
Loop time of 0.407578 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
1500 1886.5398 -2076.6018 -2076.6018 12767.753 -12767.753
1519 1886.5398 -2213.3157 -2213.3157 9574.6829 -9574.6829
Loop time of 0.085767 on 1 procs for 19 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
1500 1886.5398 -2076.6018 -2076.6018 12767.753 -12767.753
1510 1837.4263 -2073.4744 -2073.4744 14084.489 -14084.489
1520 1881.6317 -2076.5682 -2076.5682 15206.984 -15206.984
1530 2014.91 -2085.7033 -2085.7033 16139.498 -16139.498
1540 1939.8504 -2081.3506 -2081.3506 16318.524 -16318.524
1550 1918.2957 -2080.7423 -2080.7423 14753.262 -14753.262
1560 1917.5479 -2081.6617 -2081.6617 13793.844 -13793.844
1570 1881.2015 -2080.3879 -2080.3879 12378.607 -12378.607
1580 1780.2825 -2074.8721 -2074.8721 11855.074 -11855.074
1590 1794.5197 -2076.8941 -2076.8941 12493.037 -12493.037
1600 1827.5395 -2080.1465 -2080.1465 12167.977 -12167.977
Loop time of 0.411046 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
1600 1827.5395 -2080.1465 -2080.1465 12167.977 -12167.977
1618 1827.5395 -2213.2886 -2213.2886 9165.4928 -9165.4928
Loop time of 0.068053 on 1 procs for 18 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
1600 1827.5395 -2080.1465 -2080.1465 12167.977 -12167.977
1610 1776.5777 -2077.8381 -2077.8381 11792.617 -11792.617
1620 1808.7495 -2080.9613 -2080.9613 12166.045 -12166.045
1630 1873.6933 -2086.2878 -2086.2878 12862.254 -12862.254
1640 1789.9125 -2081.8308 -2081.8308 13181.26 -13181.26
1650 1766.9021 -2081.3252 -2081.3252 13554.202 -13554.202
1660 1826.7423 -2086.2422 -2086.2422 13076.865 -13076.865
1670 1818.0463 -2086.6711 -2086.6711 12349.806 -12349.806
1680 1707.4648 -2080.3046 -2080.3046 12320.035 -12320.035
1690 1766.1538 -2084.9966 -2084.9966 11616.707 -11616.707
1700 1794.7226 -2087.6647 -2087.6647 12398.897 -12398.897
Loop time of 0.403779 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
1700 1794.7226 -2087.6647 -2087.6647 12398.897 -12398.897
1719 1794.7226 -2213.2878 -2213.2878 8932.017 -8932.017
Loop time of 0.0876639 on 1 procs for 19 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
1700 1794.7226 -2087.6647 -2087.6647 12398.897 -12398.897
1710 1708.1668 -2082.6759 -2082.6759 13411.842 -13411.842
1720 1728.0552 -2084.5976 -2084.5976 11943.19 -11943.19
1730 1778.7136 -2088.4725 -2088.4725 11609.722 -11609.722
1740 1738.6395 -2086.3169 -2086.3169 12488.055 -12488.055
1750 1726.2202 -2085.9032 -2085.9032 13358.698 -13358.698
1760 1769.9502 -2089.116 -2089.116 13419.859 -13419.859
1770 1791.7387 -2090.8471 -2090.8471 13164.614 -13164.614
1780 1791.1611 -2091.0916 -2091.0916 13248.484 -13248.484
1790 1784.3829 -2090.9253 -2090.9253 13533.256 -13533.256
1800 1711.0215 -2086.3241 -2086.3241 13726.547 -13726.547
Loop time of 0.403737 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
1800 1711.0215 -2086.3241 -2086.3241 13726.547 -13726.547
1817 1711.0215 -2213.2911 -2213.2911 8363.9684 -8363.9684
Loop time of 0.0717931 on 1 procs for 17 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
1800 1711.0215 -2086.3241 -2086.3241 13726.547 -13726.547
1810 1723.9787 -2087.3167 -2087.3167 13692.211 -13692.211
1820 1817.3762 -2093.5379 -2093.5379 12798.158 -12798.158
1830 1817.1145 -2093.5962 -2093.5962 12513.323 -12513.323
1840 1674.7131 -2084.2672 -2084.2672 12636.802 -12636.802
1850 1665.0535 -2083.5668 -2083.5668 11935.487 -11935.487
1860 1747.01 -2088.7523 -2088.7523 11330.04 -11330.04
1870 1695.8643 -2085.0465 -2085.0465 11173.678 -11173.678
1880 1718.4846 -2086.1048 -2086.1048 11156.069 -11156.069
1890 1713.6873 -2085.2259 -2085.2259 11674.731 -11674.731
1900 1718.085 -2084.8514 -2084.8514 12035.048 -12035.048
Loop time of 0.405867 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
1900 1718.085 -2084.8514 -2084.8514 12035.048 -12035.048
1918 1718.085 -2213.2988 -2213.2988 8414.4676 -8414.4676
Loop time of 0.0806289 on 1 procs for 18 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
1900 1718.085 -2084.8514 -2084.8514 12035.048 -12035.048
1910 1793.2322 -2083.6327 -2083.6327 13288.48 -13288.48
1920 1727.7794 -2078.0914 -2078.0914 12888.134 -12888.134
1930 1912.2241 -2084.6701 -2084.6701 13474.49 -13474.49
1940 1832.9231 -2086.1226 -2086.1226 12319.217 -12319.217
1950 1822.842 -2086.9261 -2086.9261 13136.097 -13136.097
1960 1782.9637 -2085.1432 -2085.1432 12187.624 -12187.624
1970 1753.4226 -2081.4113 -2081.4113 13150.587 -13150.587
1980 1853.5974 -2084.2683 -2084.2683 12547.654 -12547.654
1990 1871.645 -2088.347 -2088.347 13969.401 -13969.401
2000 1800.9624 -2087.837 -2087.837 13177.288 -13177.288
Loop time of 0.405071 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
1900 1800.9624 -2087.837 -2087.837 13177.288 -13177.288
1910 1710.5536 -2081.292 -2081.292 13401.971 -13401.971
1920 1670.0325 -2077.9688 -2077.9688 12625.54 -12625.54
1930 1719.2125 -2080.407 -2080.407 12379.815 -12379.815
1940 1833.2077 -2086.9988 -2086.9988 12258.809 -12258.809
1950 1840.7671 -2086.5719 -2086.5719 12677.905 -12677.905
1960 1802.8764 -2083.2325 -2083.2325 12902.499 -12902.499
1970 1813.8827 -2083.1592 -2083.1592 13386.118 -13386.118
1980 1831.3863 -2083.5345 -2083.5345 13491.623 -13491.623
1990 1847.0481 -2083.8451 -2083.8451 12706.426 -12706.426
2000 1872.4408 -2084.874 -2084.874 11429.205 -11429.205
Loop time of 0.410325 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
2000 1872.4408 -2084.874 -2084.874 11429.205 -11429.205
2021 1872.4408 -2213.3226 -2213.3226 9475.104 -9475.104
Loop time of 0.0986221 on 1 procs for 21 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
2000 1872.4408 -2084.874 -2084.874 11429.205 -11429.205
2010 1765.2948 -2077.2433 -2077.2433 12146.16 -12146.16
2020 1757.8432 -2076.1983 -2076.1983 12504.09 -12504.09
2030 1813.1051 -2079.2312 -2079.2312 11436.942 -11436.942
2040 1826.7944 -2079.521 -2079.521 11478.147 -11478.147
2050 1806.837 -2077.6208 -2077.6208 12373.568 -12373.568
2060 1849.089 -2079.856 -2079.856 13074.725 -13074.725
2070 1818.256 -2077.308 -2077.308 13032.274 -13032.274
2080 1771.8222 -2073.7601 -2073.7601 13645.475 -13645.475
2090 1909.9579 -2082.3796 -2082.3796 13751.485 -13751.485
2100 1975.4045 -2086.2999 -2086.2999 14179.349 -14179.349
Loop time of 0.409671 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
2100 1975.4045 -2086.2999 -2086.2999 14179.349 -14179.349
2119 1975.4045 -2213.3085 -2213.3085 10184.77 -10184.77
Loop time of 0.0794539 on 1 procs for 19 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
2100 1975.4045 -2082.9637 -2082.9637 12710.356 -12710.356
2110 1868.4161 -2075.7329 -2075.7329 12966.332 -12966.332
2120 1798.1017 -2071.0269 -2071.0269 12328.302 -12328.302
2130 1848.2629 -2074.2884 -2074.2884 12341.548 -12341.548
2140 1862.7086 -2075.2436 -2075.2436 13004.344 -13004.344
2150 1862.3015 -2075.3023 -2075.3023 12790.451 -12790.451
2160 1903.324 -2078.2038 -2078.2038 11734.028 -11734.028
2170 1854.7871 -2075.3256 -2075.3256 11859.837 -11859.837
2180 1825.8707 -2073.8281 -2073.8281 13166.464 -13166.464
2190 1894.2186 -2078.8152 -2078.8152 13494.086 -13494.086
2200 1950.2952 -2083.1832 -2083.1832 12303.724 -12303.724
Loop time of 0.413296 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
2200 1950.2952 -2083.1832 -2083.1832 12303.724 -12303.724
2222 1950.2952 -2213.3198 -2213.3198 10002.569 -10002.569
Loop time of 0.100124 on 1 procs for 22 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
2200 1950.2952 -2083.1832 -2083.1832 12303.724 -12303.724
2210 1769.771 -2089.6643 -2089.6643 12302.911 -12302.911
2220 1770.8889 -2088.4834 -2088.4834 12656.727 -12656.727
2230 1813.6417 -2090.1493 -2090.1493 12982.815 -12982.815
2240 1692.7818 -2083.7862 -2083.7862 13008.705 -13008.705
2250 1827.7114 -2086.3237 -2086.3237 12916.999 -12916.999
2260 1691.4508 -2079.8213 -2079.8213 12850.565 -12850.565
2270 1798.6086 -2080.3442 -2080.3442 13878.31 -13878.31
2280 1794.1974 -2080.5532 -2080.5532 13988.43 -13988.43
2290 1730.8266 -2076.5209 -2076.5209 14913.737 -14913.737
2300 1833.1591 -2079.2373 -2079.2373 14690.562 -14690.562
Loop time of 0.409164 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
2200 1833.1591 -2079.2373 -2079.2373 14690.562 -14690.562
2210 1853.3231 -2081.1489 -2081.1489 12693.533 -12693.533
2220 1825.1492 -2079.9344 -2079.9344 12869.745 -12869.745
2230 1807.4181 -2079.4417 -2079.4417 12015.847 -12015.847
2240 1760.6729 -2077.0282 -2077.0282 11049.918 -11049.918
2250 1745.0921 -2076.6006 -2076.6006 11852.562 -11852.562
2260 1845.1183 -2083.7716 -2083.7716 12522.198 -12522.198
2270 1848.7947 -2084.6456 -2084.6456 13780.446 -13780.446
2280 1771.56 -2080.214 -2080.214 15118.29 -15118.29
2290 1810.9084 -2083.4423 -2083.4423 13697.379 -13697.379
2300 1874.5715 -2088.3257 -2088.3257 13479.591 -13479.591
Loop time of 0.406297 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
2300 1874.5715 -2088.3257 -2088.3257 13479.591 -13479.591
2318 1874.5715 -2213.2825 -2213.2825 9487.1289 -9487.1289
Loop time of 0.0681179 on 1 procs for 18 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
2300 1874.5715 -2088.3257 -2088.3257 13479.591 -13479.591
2310 1799.9066 -2084.1365 -2084.1365 13764.662 -13764.662
2320 1806.3902 -2085.2995 -2085.2995 13501.488 -13501.488
2330 1809.6795 -2086.2598 -2086.2598 13038.078 -13038.078
2340 1728.7746 -2081.6123 -2081.6123 12506.517 -12506.517
2350 1749.5618 -2083.5764 -2083.5764 11892.613 -11892.613
2360 1764.9524 -2085.1076 -2085.1076 11816.029 -11816.029
2370 1725.4759 -2082.9357 -2082.9357 12073.491 -12073.491
2380 1776.5011 -2086.6482 -2086.6482 12089.877 -12089.877
2390 1790.7081 -2087.8936 -2087.8936 12491.991 -12491.991
2400 1718.6191 -2083.3981 -2083.3981 12564.395 -12564.395
Loop time of 0.407336 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
2400 1718.6191 -2083.3981 -2083.3981 12564.395 -12564.395
2417 1718.6191 -2213.2938 -2213.2938 8416.0699 -8416.0699
Loop time of 0.070313 on 1 procs for 17 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
2400 1718.6191 -2083.3981 -2083.3981 12564.395 -12564.395
2410 1783.1812 -2082.5143 -2082.5143 12488.592 -12488.592
2420 1740.6277 -2078.7813 -2078.7813 13656.427 -13656.427
2430 1843.4455 -2081.8167 -2081.8167 14136.267 -14136.267
2440 1784.5508 -2080.9749 -2080.9749 12677.88 -12677.88
2450 1772.8791 -2079.3362 -2079.3362 13511.342 -13511.342
2460 1808.4916 -2080.0209 -2080.0209 13578.29 -13578.29
2470 1806.8503 -2080.5826 -2080.5826 13865.598 -13865.598
2480 1773.5282 -2078.9234 -2078.9234 12934.632 -12934.632
2490 1831.8516 -2081.1045 -2081.1045 13293.179 -13293.179
2500 1761.2282 -2078.6184 -2078.6184 12685.303 -12685.303
Loop time of 0.403626 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
2400 1761.2282 -2078.6184 -2078.6184 12685.303 -12685.303
2410 1865.9955 -2085.5849 -2085.5849 12418.549 -12418.549
2420 1858.6339 -2085.2406 -2085.2406 12294.6 -12294.6
2430 1758.9969 -2078.8937 -2078.8937 12480.947 -12480.947
2440 1840.6222 -2084.5641 -2084.5641 11944.258 -11944.258
2450 1818.6705 -2083.5453 -2083.5453 11142.112 -11142.112
2460 1653.6497 -2073.2015 -2073.2015 10876.683 -10876.683
2470 1712.3081 -2077.637 -2077.637 10812.088 -10812.088
2480 1821.2072 -2085.4884 -2085.4884 10444.81 -10444.81
2490 1722.8782 -2079.8162 -2079.8162 12584.047 -12584.047
2500 1749.4477 -2082.4239 -2082.4239 13138.948 -13138.948
Loop time of 0.407716 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
2500 1749.4477 -2082.4239 -2082.4239 13138.948 -13138.948
2522 1749.4477 -2213.3181 -2213.3181 8629.9873 -8629.9873
Loop time of 0.091486 on 1 procs for 22 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
2500 1749.4477 -2085.5282 -2085.5282 13026.011 -13026.011
2510 1847.5881 -2092.971 -2092.971 11626.051 -11626.051
2520 1756.1279 -2088.0134 -2088.0134 11851.217 -11851.217
2530 1632.9814 -2080.8808 -2080.8808 12087.856 -12087.856
2540 1673.5799 -2084.3724 -2084.3724 11214.772 -11214.772
2550 1691.2987 -2086.2212 -2086.2212 10888.491 -10888.491
2560 1652.2967 -2084.1605 -2084.1605 11411.934 -11411.934
2570 1743.6642 -2090.5705 -2090.5705 11308.438 -11308.438
2580 1718.418 -2089.1864 -2089.1864 12259.871 -12259.871
2590 1719.7172 -2089.4648 -2089.4648 13337.02 -13337.02
2600 1791.7534 -2094.3153 -2094.3153 13816.645 -13816.645
Loop time of 0.407358 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
2600 1791.7534 -2094.3153 -2094.3153 13816.645 -13816.645
2616 1791.7534 -2213.2887 -2213.2887 8922.5524 -8922.5524
Loop time of 0.0690961 on 1 procs for 16 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
2600 1791.7534 -2094.3153 -2094.3153 13816.645 -13816.645
2610 1830.4835 -2084.3182 -2084.3182 12861.619 -12861.619
2620 1769.7016 -2082.3952 -2082.3952 12728.134 -12728.134
2630 1844.7689 -2085.411 -2085.411 13489.575 -13489.575
2640 1838.041 -2088.023 -2088.023 12178.747 -12178.747
2650 1773.4583 -2086.3884 -2086.3884 12294.504 -12294.504
2660 1802.1971 -2086.6509 -2086.6509 12616.41 -12616.41
2670 1750.3937 -2083.4939 -2083.4939 12473.23 -12473.23
2680 1773.9202 -2081.8494 -2081.8494 13591.569 -13591.569
2690 1823.2947 -2083.454 -2083.454 13427.02 -13427.02
2700 1752.2886 -2080.3613 -2080.3613 12790.155 -12790.155
Loop time of 0.402919 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
2600 1752.2886 -2080.3613 -2080.3613 12790.155 -12790.155
2610 1747.3086 -2080.0268 -2080.0268 11842.898 -11842.898
2620 1756.8501 -2080.5841 -2080.5841 11650.923 -11650.923
2630 1747.7557 -2079.8425 -2079.8425 11330.938 -11330.938
2640 1755.4611 -2080.1294 -2080.1294 11951.432 -11951.432
2650 1796.0637 -2082.5176 -2082.5176 12140.389 -12140.389
2660 1773.9674 -2080.712 -2080.712 13347.273 -13347.273
2670 1862.117 -2086.1376 -2086.1376 14170.648 -14170.648
2680 1911.7101 -2089.049 -2089.049 14196.35 -14196.35
2690 1811.8014 -2082.1976 -2082.1976 14254.813 -14254.813
2700 1824.6227 -2082.814 -2082.814 14492.429 -14492.429
Loop time of 0.405005 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
2700 1824.6227 -2082.814 -2082.814 14492.429 -14492.429
2717 1824.6227 -2213.2652 -2213.2652 9144.515 -9144.515
Loop time of 0.0782719 on 1 procs for 17 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
2700 1824.6227 -2082.814 -2082.814 14492.429 -14492.429
2710 1899.9842 -2087.5754 -2087.5754 14396.883 -14396.883
2720 1831.8355 -2082.9558 -2082.9558 14576.427 -14576.427
2730 1791.3788 -2080.2118 -2080.2118 14051.507 -14051.507
2740 1827.7221 -2082.5277 -2082.5277 13104.608 -13104.608
2750 1812.4592 -2081.4575 -2081.4575 12891.571 -12891.571
2760 1773.9654 -2078.8585 -2078.8585 13099.073 -13099.073
2770 1805.6317 -2080.8621 -2080.8621 12315.736 -12315.736
2780 1803.1617 -2080.6043 -2080.6043 11644.637 -11644.637
2790 1717.1009 -2074.8069 -2074.8069 11760.938 -11760.938
2800 1735.4119 -2075.7987 -2075.7987 12827.546 -12827.546
Loop time of 0.406528 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
2800 1735.4119 -2075.7987 -2075.7987 12827.546 -12827.546
2819 1735.4119 -2213.3013 -2213.3013 8530.1318 -8530.1318
Loop time of 0.0863309 on 1 procs for 19 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
2800 1735.4119 -2075.7987 -2075.7987 12827.546 -12827.546
2810 1802.2056 -2079.855 -2079.855 13919.562 -13919.562
2820 1940.1885 -2088.5707 -2088.5707 14470.417 -14470.417
2830 1933.0396 -2087.8198 -2087.8198 14840.734 -14840.734
2840 1844.1755 -2081.8479 -2081.8479 14604.061 -14604.061
2850 1837.3212 -2081.3583 -2081.3583 14352.808 -14352.808
2860 1826.4544 -2080.6436 -2080.6436 13623.339 -13623.339
2870 1838.1223 -2081.4645 -2081.4645 12763.961 -12763.961
2880 1790.3185 -2078.404 -2078.404 12533.594 -12533.594
2890 1791.5839 -2078.5836 -2078.5836 13205.719 -13205.719
2900 1837.4548 -2081.7215 -2081.7215 13683.351 -13683.351
Loop time of 0.403748 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
2900 1837.4548 -2081.7215 -2081.7215 13683.351 -13683.351
2918 1837.4548 -2213.2997 -2213.2997 9235.1507 -9235.1507
Loop time of 0.0722511 on 1 procs for 18 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
2900 1837.4548 -2081.7215 -2081.7215 13683.351 -13683.351
2910 1814.6656 -2080.3673 -2080.3673 14429.667 -14429.667
2920 1907.2868 -2086.7045 -2086.7045 14525.85 -14525.85
2930 1906.7527 -2087.0631 -2087.0631 14293.074 -14293.074
2940 1859.239 -2084.5047 -2084.5047 13134.716 -13134.716
2950 1790.1922 -2080.6548 -2080.6548 12058.463 -12058.463
2960 1692.7243 -2074.9055 -2074.9055 12611.244 -12611.244
2970 1787.0958 -2081.7786 -2081.7786 11928.751 -11928.751
2980 1787.3509 -2082.4521 -2082.4521 11435.785 -11435.785
2990 1725.6798 -2079.0412 -2079.0412 12294.304 -12294.304
3000 1709.8977 -2078.5866 -2078.5866 13352.743 -13352.743
Loop time of 0.402853 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
3000 1709.8977 -2078.5866 -2078.5866 13352.743 -13352.743
3021 1709.8977 -2213.306 -2213.306 8358.7077 -8358.7077
Loop time of 0.0926712 on 1 procs for 21 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
3000 1709.8977 -2080.3808 -2080.3808 13076.659 -13076.659
Loop time of 13.0159 on 1 procs for 21 steps with 511 atoms
PRD stats:
Dephase time (%) = 2.83223 (21.7599)
Dynamics time (%) = 8.13289 (62.4844)
Quench time (%) = 1.6366 (12.5739)
Other time (%) = 0.271435 (2.08542)
Nlocal: 511 ave 511 max 511 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Nghost: 1017 ave 1017 max 1017 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Neighs: 0 ave 0 max 0 min
Histogram: 1 0 0 0 0 0 0 0 0 0
FullNghs: 13428 ave 13428 max 13428 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Total # of neighbors = 13428
Ave neighs/atom = 26.2779
Neighbor list builds = 92
Dangerous builds = 0

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LAMMPS (10 Sep 2010)
Processor partition = 3
# Parallel replica dynamics model for a single vacancy in bulk Si
# events occur when a neighboring atom diffuses to the vacant site
# run this on multiple partitions as
# mpirun -np 4 lmp_g++ -partition 4x1 -in in.prd
units metal
atom_style atomic
atom_modify map array
boundary p p p
atom_modify sort 0 0.0
# temperature
variable t equal 1800.0
# coordination number cutoff
variable r equal 2.835
# minimization parameters
variable etol equal 1.0e-5
variable ftol equal 1.0e-5
variable maxiter equal 100
variable maxeval equal 100
variable dmax equal 1.0e-1
# diamond unit cell
variable a equal 5.431
lattice custom $a a1 1.0 0.0 0.0 a2 0.0 1.0 0.0 a3 0.0 0.0 1.0 basis 0.0 0.0 0.0 basis 0.0 0.5 0.5 basis 0.5 0.0 0.5 basis 0.5 0.5 0.0 basis 0.25 0.25 0.25 basis 0.25 0.75 0.75 basis 0.75 0.25 0.75 basis 0.75 0.75 0.25
lattice custom 5.431 a1 1.0 0.0 0.0 a2 0.0 1.0 0.0 a3 0.0 0.0 1.0 basis 0.0 0.0 0.0 basis 0.0 0.5 0.5 basis 0.5 0.0 0.5 basis 0.5 0.5 0.0 basis 0.25 0.25 0.25 basis 0.25 0.75 0.75 basis 0.75 0.25 0.75 basis 0.75 0.75 0.25
Lattice spacing in x,y,z = 5.431 5.431 5.431
region myreg block 0 4 0 4 0 4
create_box 1 myreg
Created orthogonal box = (0 0 0) to (21.724 21.724 21.724)
1 by 1 by 1 processor grid
create_atoms 1 region myreg
Created 512 atoms
mass 1 28.06
group Si type 1
512 atoms in group Si
velocity all create $t 5287287 mom yes rot yes dist gaussian
velocity all create 1800 5287287 mom yes rot yes dist gaussian
# make a vacancy
group del id 300
1 atoms in group del
delete_atoms group del
Deleted 1 atoms, new total = 511
pair_style sw
pair_coeff * * Si.sw Si
thermo 10
fix 1 all nvt temp $t $t 0.1
fix 1 all nvt temp 1800 $t 0.1
fix 1 all nvt temp 1800 1800 0.1
timestep 1.0e-3
neighbor 1.0 bin
neigh_modify every 1 delay 10 check yes
# equilibrate
run 1000
Memory usage per processor = 1.70934 Mbytes
Step Temp E_pair E_mol TotEng Press
0 1802.5039 -2211.666 0 -2092.8401 12351.692
10 996.01982 -2158.3093 0 -2092.649 14285.475
20 590.09928 -2131.1531 0 -2092.2521 12113.964
30 1033.01 -2159.2522 0 -2091.1534 6860.4116
40 724.76581 -2137.281 0 -2089.5025 5999.4372
50 489.66604 -2120.8082 0 -2088.5281 6403.4234
60 960.70653 -2150.7394 0 -2087.407 5687.324
70 908.41498 -2145.7665 0 -2085.8813 8220.9655
80 796.82286 -2137.1227 0 -2084.5941 11307.153
90 1245.9045 -2164.9841 0 -2082.8507 11282.071
100 1083.0647 -2152.0805 0 -2080.682 12015.018
110 846.80459 -2134.8152 0 -2078.9916 11904.208
120 1130.5577 -2151.6282 0 -2077.0988 9631.0553
130 1011.5223 -2141.5579 0 -2074.8757 9674.727
140 828.13015 -2127.6781 0 -2073.0856 10663.754
150 1213.6842 -2151.0205 0 -2071.0112 9358.162
160 1118.1701 -2142.223 0 -2068.5102 9705.042
170 815.94964 -2120.3781 0 -2066.5885 11111.781
180 1149.9499 -2140.3762 0 -2064.5684 10362.874
190 1265.3227 -2145.3133 0 -2061.8998 10208.885
200 967.96035 -2123.4032 0 -2059.5927 11429.676
210 1154.8198 -2133.5775 0 -2057.4487 10697.231
220 1309.6664 -2141.0968 0 -2054.7601 10123.484
230 1123.114 -2126.2814 0 -2052.2427 11010.813
240 1262.1761 -2133.0492 0 -2049.8432 10358.728
250 1387.1979 -2138.5224 0 -2047.0746 9224.1203
260 1099.3995 -2117.0127 0 -2044.5373 9902.009
270 1119.6867 -2116.1281 0 -2042.3154 9925.7178
280 1412.0178 -2132.6875 0 -2039.6036 8270.5884
290 1321.0773 -2123.8202 0 -2036.7313 8809.0223
300 1216.0708 -2114.3828 0 -2034.2162 9035.0512
310 1359.9122 -2121.2409 0 -2031.5918 7895.5635
320 1322.8642 -2116.0313 0 -2028.8245 8661.9299
330 1272.4262 -2110.1033 0 -2026.2215 10341.489
340 1451.8803 -2119.1983 0 -2023.4865 10343.627
350 1488.8525 -2118.6967 0 -2020.5476 10786.017
360 1330.5957 -2105.5746 0 -2017.8582 11501.105
370 1452.1996 -2110.9637 0 -2015.2308 11534.951
380 1598.8893 -2117.7127 0 -2012.3096 12209.282
390 1593.9074 -2114.5133 0 -2009.4386 13050.071
400 1580.9099 -2110.9274 0 -2006.7096 12007.149
410 1499.3026 -2102.9454 0 -2004.1074 10088.553
420 1368.9435 -2091.8877 0 -2001.6433 8465.3083
430 1297.2041 -2084.7532 0 -1999.2381 7269.5758
440 1450.1063 -2092.2353 0 -1996.6405 7033.8027
450 1534.8081 -2094.9394 0 -1993.7608 9081.5997
460 1556.639 -2093.5424 0 -1990.9246 12400.015
470 1803.1464 -2106.8774 0 -1988.0092 14192.515
480 1865.4976 -2108.05 0 -1985.0714 16740.251
490 1809.642 -2101.8102 0 -1982.5137 17670.617
500 1875.0318 -2103.7815 0 -1980.1744 15726.048
510 1835.5401 -2099.0223 0 -1978.0186 13590.87
520 1592.2743 -2081.0889 0 -1976.1219 12889.185
530 1621.098 -2081.1646 0 -1974.2975 12097.358
540 1787.4042 -2090.0335 0 -1972.203 11006.55
550 1629.769 -2077.5584 0 -1970.1196 11828.612
560 1633.9967 -2075.8478 0 -1968.1303 13013.747
570 1867.8884 -2089.0683 0 -1965.9321 12589.17
580 1897.3799 -2088.7925 0 -1963.7122 12142.767
590 1675.1213 -2072.2289 0 -1961.8004 12668.905
600 1852.5707 -2082.1073 0 -1959.9809 11872.082
610 1895.1634 -2083.0113 0 -1958.0771 12732.408
620 1759.7637 -2072.4168 0 -1956.4085 14720.014
630 1867.9005 -2077.9673 0 -1954.8303 15446.507
640 1882.4501 -2077.3643 0 -1953.2682 16189.673
650 1830.0215 -2072.5142 0 -1951.8743 15952.621
660 1989.6605 -2081.7336 0 -1950.5699 14441.731
670 2019.3348 -2082.5674 0 -1949.4475 13093.568
680 1806.7881 -2067.7448 0 -1948.6365 13695.415
690 1860.9944 -2070.6335 0 -1947.9518 13711.769
700 2035.4273 -2081.5085 0 -1947.3277 13969.607
710 1924.1115 -2073.7877 0 -1946.9451 14669.272
720 1925.0897 -2073.7075 0 -1946.8005 14665.913
730 1979.7127 -2077.3504 0 -1946.8425 14625.754
740 1932.6041 -2074.5197 0 -1947.1173 15051.1
750 1873.6645 -2071.0745 0 -1947.5575 14804.579
760 1916.3833 -2074.4703 0 -1948.1372 13868.322
770 1893.2199 -2073.6709 0 -1948.8647 14320.209
780 1868.0258 -2072.8444 0 -1949.6991 13913.255
790 1903.3142 -2076.1305 0 -1950.6589 13542.781
800 1852.3079 -2073.8193 0 -1951.7102 13663.021
810 1874.015 -2076.3795 0 -1952.8394 12583.329
820 1897.7242 -2079.181 0 -1954.0779 12629.436
830 1810.9511 -2074.7734 0 -1955.3907 13791.194
840 1751.9411 -2072.1105 0 -1956.6178 14705.479
850 1904.2872 -2083.4009 0 -1957.8652 14745.454
860 1916.5803 -2085.6068 0 -1959.2607 14829.039
870 1838.661 -2081.9371 0 -1960.7276 14932.396
880 1847.5879 -2084.017 0 -1962.219 14581.23
890 1850.4293 -2085.7191 0 -1963.7338 13109.312
900 1822.6233 -2085.4213 0 -1965.2691 13769.397
910 1786.0307 -2084.4806 0 -1966.7407 13450.462
920 1823.0469 -2088.3777 0 -1968.1976 12242.2
930 1731.0515 -2083.7104 0 -1969.5949 11686.755
940 1635.923 -2078.6209 0 -1970.7765 11861.596
950 1731.8445 -2085.9611 0 -1971.7933 11269.332
960 1735.3582 -2087.1207 0 -1972.7212 11587.883
970 1672.4435 -2083.7706 0 -1973.5187 12217.898
980 1703.4917 -2086.4744 0 -1974.1757 12431.952
990 1733.7211 -2089.007 0 -1974.7155 12829.553
1000 1764.9513 -2091.5262 0 -1975.1759 13614.2
Loop time of 3.86403 on 1 procs for 1000 steps with 511 atoms
Pair time (%) = 3.77704 (97.7485)
Neigh time (%) = 0.0425396 (1.10091)
Comm time (%) = 0.0136774 (0.353966)
Outpt time (%) = 0.0012846 (0.033245)
Other time (%) = 0.0294981 (0.763401)
Nlocal: 511 ave 511 max 511 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Nghost: 1017 ave 1017 max 1017 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Neighs: 0 ave 0 max 0 min
Histogram: 1 0 0 0 0 0 0 0 0 0
FullNghs: 13440 ave 13440 max 13440 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Total # of neighbors = 13440
Ave neighs/atom = 26.3014
Neighbor list builds = 44
Dangerous builds = 0
# only output atoms near vacancy
compute coord all coord/atom $r
compute coord all coord/atom 2.835
dump events all custom 1 dump.prd id type x y z
dump_modify events thresh c_coord != 4
compute patom all pe/atom
compute pe all reduce sum c_patom
compute satom all stress/atom
compute str all reduce sum c_satom[1] c_satom[2] c_satom[3]
variable press equal (c_str[1]+c_str[2]+c_str[3])/(3*vol)
thermo_style custom step temp pe c_pe press v_press
compute 1 all event/displace 0.5
prd 2000 100 10 10 100 1 54985 temp $t min ${etol} ${ftol} ${maxiter} ${maxeval} vel all uniform
prd 2000 100 10 10 100 1 54985 temp 1800 min ${etol} ${ftol} ${maxiter} ${maxeval} vel all uniform
prd 2000 100 10 10 100 1 54985 temp 1800 min 1e-05 ${ftol} ${maxiter} ${maxeval} vel all uniform
prd 2000 100 10 10 100 1 54985 temp 1800 min 1e-05 1e-05 ${maxiter} ${maxeval} vel all uniform
prd 2000 100 10 10 100 1 54985 temp 1800 min 1e-05 1e-05 100 ${maxeval} vel all uniform
prd 2000 100 10 10 100 1 54985 temp 1800 min 1e-05 1e-05 100 100 vel all uniform
Memory usage per processor = 3.42595 Mbytes
Step Temp PotEng pe Press press
1000 1764.9513 -2091.5262 -2091.5262 13614.2 -13614.2
1010 1764.9513 -2212.5976 -2212.5976 8682.8748 -8682.8748
1018 1764.9513 -2213.2997 -2213.2997 8735.7723 -8735.7723
Loop time of 0.0824261 on 1 procs for 18 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
1000 1764.9513 -2091.5262 -2091.5262 13614.2 -13614.2
1010 1834.8521 -2094.3013 -2094.3013 12230.025 -12230.025
1020 1788.4153 -2094.0289 -2094.0289 11526.376 -11526.376
1030 1718.6535 -2089.1334 -2089.1334 11778.672 -11778.672
1040 1758.9268 -2086.8503 -2086.8503 12461.878 -12461.878
1050 1812.0032 -2088.0691 -2088.0691 11504.047 -11504.047
1060 1675.9043 -2080.2513 -2080.2513 11187.457 -11187.457
1070 1878.1639 -2085.7821 -2085.7821 11141.419 -11141.419
1080 1754.6906 -2083.1783 -2083.1783 11883.271 -11883.271
1090 1755.0825 -2080.5598 -2080.5598 12810.039 -12810.039
1100 1773.4324 -2079.1267 -2079.1267 12213.815 -12213.815
Loop time of 0.401035 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
1000 1773.4324 -2079.1267 -2079.1267 12213.815 -12213.815
1010 1768.6075 -2079.0905 -2079.0905 12599.877 -12599.877
1020 1778.9872 -2080.0251 -2080.0251 11999.911 -11999.911
1030 1775.3752 -2079.999 -2079.999 11956.363 -11956.363
1040 1811.4825 -2082.5736 -2082.5736 13045.817 -13045.817
1050 1857.444 -2085.8297 -2085.8297 13368.842 -13368.842
1060 1807.8684 -2082.8382 -2082.8382 14221.151 -14221.151
1070 1770.9296 -2080.6812 -2080.6812 14764.483 -14764.483
1080 1866.0553 -2087.2498 -2087.2498 12934.836 -12934.836
1090 1788.0574 -2082.429 -2082.429 12145.714 -12145.714
1100 1796.7073 -2083.3393 -2083.3393 13219.949 -13219.949
Loop time of 0.407474 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
1100 1796.7073 -2083.3393 -2083.3393 13219.949 -13219.949
1119 1796.7073 -2213.2857 -2213.2857 8950.2482 -8950.2482
Loop time of 0.0804451 on 1 procs for 19 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
1100 1796.7073 -2085.5621 -2085.5621 12749.682 -12749.682
1110 1750.5827 -2082.8155 -2082.8155 11973.974 -11973.974
1120 1748.5509 -2082.9291 -2082.9291 10734.144 -10734.144
1130 1673.4261 -2078.1286 -2078.1286 10562.538 -10562.538
1140 1654.6136 -2076.8965 -2076.8965 11764.85 -11764.85
1150 1724.3547 -2081.3371 -2081.3371 11837.922 -11837.922
1160 1789.0551 -2085.3383 -2085.3383 11666.866 -11666.866
1170 1753.7677 -2082.7026 -2082.7026 12675.689 -12675.689
1180 1796.824 -2085.1982 -2085.1982 13903.742 -13903.742
1190 1872.0159 -2089.7921 -2089.7921 14584.813 -14584.813
1200 1916.4398 -2092.4391 -2092.4391 14959.949 -14959.949
Loop time of 0.403266 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
1200 1916.4398 -2092.4391 -2092.4391 14959.949 -14959.949
1217 1916.4398 -2213.3155 -2213.3155 9778.489 -9778.489
Loop time of 0.0776191 on 1 procs for 17 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
1200 1916.4398 -2092.4391 -2092.4391 14959.949 -14959.949
1210 1675.7593 -2082.4079 -2082.4079 14585.22 -14585.22
1220 1845.2242 -2085.095 -2085.095 14281.38 -14281.38
1230 1779.4946 -2083.466 -2083.466 14423.928 -14423.928
1240 1861.3885 -2087.2255 -2087.2255 13713.134 -13713.134
1250 1872.7715 -2091.7812 -2091.7812 12764.426 -12764.426
1260 1825.2394 -2093.2555 -2093.2555 12369.817 -12369.817
1270 1839.9173 -2095.7337 -2095.7337 13020.922 -13020.922
1280 1799.7895 -2095.606 -2095.606 13163.659 -13163.659
1290 1715.9861 -2089.9263 -2089.9263 13140.033 -13140.033
1300 1795.312 -2089.4428 -2089.4428 13766.346 -13766.346
Loop time of 0.400685 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
1200 1795.312 -2089.4428 -2089.4428 13766.346 -13766.346
1210 1768.9906 -2087.5243 -2087.5243 12982.75 -12982.75
1220 1705.7092 -2083.1216 -2083.1216 12557.139 -12557.139
1230 1724.1144 -2084.0042 -2084.0042 11625.882 -11625.882
1240 1784.4172 -2087.553 -2087.553 11642.759 -11642.759
1250 1739.4891 -2084.1093 -2084.1093 12660.681 -12660.681
1260 1741.2481 -2083.6821 -2083.6821 13501.897 -13501.897
1270 1898.2074 -2093.4307 -2093.4307 13680.577 -13680.577
1280 1814.3041 -2087.3387 -2087.3387 13984.674 -13984.674
1290 1728.5937 -2081.1956 -2081.1956 14152.533 -14152.533
1300 1827.4489 -2087.163 -2087.163 13112.89 -13112.89
Loop time of 0.40548 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
1300 1827.4489 -2087.163 -2087.163 13112.89 -13112.89
1318 1827.4489 -2213.2636 -2213.2636 9162.3198 -9162.3198
Loop time of 0.0793381 on 1 procs for 18 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
1300 1827.4489 -2087.163 -2087.163 13112.89 -13112.89
1310 1824.6764 -2086.4198 -2086.4198 12595.394 -12595.394
1320 1704.6794 -2077.9725 -2077.9725 12519.487 -12519.487
1330 1733.9238 -2079.3053 -2079.3053 10955.938 -10955.938
1340 1767.4849 -2080.8047 -2080.8047 10529.7 -10529.7
1350 1762.8843 -2079.7423 -2079.7423 11122.068 -11122.068
1360 1815.5163 -2082.4132 -2082.4132 12334.647 -12334.647
1370 1830.8674 -2082.619 -2082.619 13476.773 -13476.773
1380 1836.8237 -2082.253 -2082.253 14022.573 -14022.573
1390 1853.5334 -2082.6462 -2082.6462 14666.103 -14666.103
1400 1859.7676 -2082.4142 -2082.4142 15051.952 -15051.952
Loop time of 0.406457 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
1400 1859.7676 -2082.4142 -2082.4142 15051.952 -15051.952
1418 1859.7676 -2213.2763 -2213.2763 9381.7315 -9381.7315
Loop time of 0.0697041 on 1 procs for 18 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
1400 1859.7676 -2082.4142 -2082.4142 15051.952 -15051.952
1410 1893.8876 -2088.047 -2088.047 14042.151 -14042.151
1420 1656.6444 -2078.0482 -2078.0482 13960.779 -13960.779
1430 1977.0382 -2089.1253 -2089.1253 14883.226 -14883.226
1440 1816.1299 -2089.7082 -2089.7082 12909.044 -12909.044
1450 1806.4515 -2089.692 -2089.692 11739.293 -11739.293
1460 1714.9443 -2083.6389 -2083.6389 11714.61 -11714.61
1470 1801.9111 -2083.2878 -2083.2878 11904.078 -11904.078
1480 1807.3084 -2083.283 -2083.283 11797.261 -11797.261
1490 1750.4004 -2079.5205 -2079.5205 12103.929 -12103.929
1500 1826.9416 -2080.7804 -2080.7804 13680.5 -13680.5
Loop time of 0.4006 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
1400 1826.9416 -2080.7804 -2080.7804 13680.5 -13680.5
1410 1862.2011 -2082.6116 -2082.6116 13879.33 -13879.33
1420 1850.4127 -2081.4124 -2081.4124 13534.06 -13534.06
1430 1798.6982 -2077.6455 -2077.6455 13422.583 -13422.583
1440 1845.9989 -2080.4286 -2080.4286 13746.467 -13746.467
1450 1906.4945 -2084.1305 -2084.1305 14400.739 -14400.739
1460 1888.6219 -2082.7918 -2082.7918 14196.206 -14196.206
1470 1863.8249 -2081.1143 -2081.1143 14470.026 -14470.026
1480 1896.4747 -2083.342 -2083.342 14564.107 -14564.107
1490 1840.0294 -2079.7889 -2079.7889 15217.99 -15217.99
1500 1857.0723 -2081.1669 -2081.1669 14907.999 -14907.999
Loop time of 0.407088 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
1500 1857.0723 -2081.1669 -2081.1669 14907.999 -14907.999
1520 1857.0723 -2213.2604 -2213.2604 9362.185 -9362.185
Loop time of 0.0960219 on 1 procs for 20 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
1500 1857.0723 -2081.1669 -2081.1669 14907.999 -14907.999
1510 1862.6554 -2081.858 -2081.858 13573.264 -13573.264
1520 1832.9218 -2080.309 -2080.309 12402.702 -12402.702
1530 1785.3092 -2077.6036 -2077.6036 11814.149 -11814.149
1540 1825.9059 -2080.7261 -2080.7261 11770.252 -11770.252
1550 1795.8155 -2079.2124 -2079.2124 13174.86 -13174.86
1560 1744.7307 -2076.2845 -2076.2845 13250.941 -13250.941
1570 1794.5229 -2079.9675 -2079.9675 12122.881 -12122.881
1580 1797.9896 -2080.5822 -2080.5822 11926.482 -11926.482
1590 1775.9043 -2079.5023 -2079.5023 12677.412 -12677.412
1600 1832.3086 -2083.5913 -2083.5913 13977.106 -13977.106
Loop time of 0.404324 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
1600 1832.3086 -2083.5913 -2083.5913 13977.106 -13977.106
1621 1832.3086 -2213.3137 -2213.3137 9196.559 -9196.559
Loop time of 0.0965209 on 1 procs for 21 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
1600 1832.3086 -2083.5913 -2083.5913 13977.106 -13977.106
1610 1880.4604 -2087.2026 -2087.2026 15086.696 -15086.696
1620 1786.0535 -2081.4694 -2081.4694 14896.103 -14896.103
1630 1836.272 -2085.2962 -2085.2962 13775.173 -13775.173
1640 1892.5825 -2089.5967 -2089.5967 13148.608 -13148.608
1650 1771.3954 -2082.266 -2082.266 13180.554 -13180.554
1660 1722.0245 -2079.6093 -2079.6093 13182.384 -13182.384
1670 1827.7886 -2087.1366 -2087.1366 12746.428 -12746.428
1680 1789.6814 -2085.1909 -2085.1909 13160.817 -13160.817
1690 1721.5672 -2081.2173 -2081.2173 14170.727 -14170.727
1700 1844.2249 -2089.7859 -2089.7859 14599.737 -14599.737
Loop time of 0.402065 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
1700 1844.2249 -2089.7859 -2089.7859 14599.737 -14599.737
1717 1844.2249 -2213.2611 -2213.2611 9275.9867 -9275.9867
Loop time of 0.0800231 on 1 procs for 17 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
1700 1844.2249 -2087.6647 -2087.6647 12738.882 -12738.882
1710 1814.5475 -2086.2123 -2086.2123 14107.726 -14107.726
1720 1773.1656 -2084.0002 -2084.0002 14449.417 -14449.417
1730 1834.0635 -2088.5249 -2088.5249 13597.224 -13597.224
1740 1865.1657 -2091.147 -2091.147 12703.147 -12703.147
1750 1773.8268 -2085.7417 -2085.7417 12346.629 -12346.629
1760 1749.9529 -2084.7483 -2084.7483 12323.265 -12323.265
1770 1763.6027 -2086.1766 -2086.1766 11974.478 -11974.478
1780 1724.2073 -2084.0301 -2084.0301 11865.223 -11865.223
1790 1797.6762 -2089.2757 -2089.2757 11445.896 -11445.896
1800 1779.8767 -2088.4809 -2088.4809 10285.887 -10285.887
Loop time of 0.402711 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
1800 1779.8767 -2088.4809 -2088.4809 10285.887 -10285.887
1816 1779.8767 -2213.2303 -2213.2303 8829.5454 -8829.5454
Loop time of 0.07076 on 1 procs for 16 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
1800 1779.8767 -2086.3241 -2086.3241 14199.449 -14199.449
1810 1963.5412 -2098.9207 -2098.9207 13956.106 -13956.106
1820 1753.2743 -2085.643 -2085.643 15049.903 -15049.903
1830 1761.817 -2086.7699 -2086.7699 13908.44 -13908.44
1840 1821.9139 -2091.283 -2091.283 11939.624 -11939.624
1850 1609.9437 -2077.7938 -2077.7938 11999.742 -11999.742
1860 1576.119 -2075.8191 -2075.8191 11623.222 -11623.222
1870 1760.9032 -2088.0697 -2088.0697 10214.742 -10214.742
1880 1625.1319 -2079.027 -2079.027 11759.632 -11759.632
1890 1706.1163 -2084.1255 -2084.1255 13505.074 -13505.074
1900 2028.3849 -2105.0322 -2105.0322 13575.891 -13575.891
Loop time of 0.405571 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
1900 2028.3849 -2105.0322 -2105.0322 13575.891 -13575.891
1917 2028.3849 -2213.2753 -2213.2753 10540.806 -10540.806
Loop time of 0.0749841 on 1 procs for 17 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
1900 2028.3849 -2105.0322 -2105.0322 13575.891 -13575.891
1910 1710.5601 -2078.3574 -2078.3574 12757.803 -12757.803
1920 1835.7195 -2080.3835 -2080.3835 13164.925 -13164.925
1930 1898.9488 -2086.6346 -2086.6346 12737.979 -12737.979
1940 1821.2008 -2087.8239 -2087.8239 11845.85 -11845.85
1950 1747.4523 -2084.1487 -2084.1487 10859.973 -10859.973
1960 1837.3402 -2086.3748 -2086.3748 11955.123 -11955.123
1970 1800.5442 -2086.1944 -2086.1944 11390.897 -11390.897
1980 1781.0658 -2084.7277 -2084.7277 11612.595 -11612.595
1990 1888.7735 -2090.3722 -2090.3722 12064.74 -12064.74
2000 1774.4774 -2088.5245 -2088.5245 11977.716 -11977.716
Loop time of 0.403559 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
1900 1774.4774 -2088.5245 -2088.5245 11977.716 -11977.716
1910 1745.4216 -2086.4038 -2086.4038 11788.462 -11788.462
1920 1750.1793 -2086.453 -2086.453 12053.602 -12053.602
1930 1744.5431 -2085.7408 -2085.7408 12066.016 -12066.016
1940 1741.0435 -2085.0883 -2085.0883 11478.678 -11478.678
1950 1794.5224 -2088.1241 -2088.1241 10863.736 -10863.736
1960 1758.7026 -2085.2218 -2085.2218 11203.404 -11203.404
1970 1768.7224 -2085.3092 -2085.3092 11657.077 -11657.077
1980 1811.3753 -2087.4961 -2087.4961 11091.279 -11091.279
1990 1747.8981 -2082.6727 -2082.6727 11548.445 -11548.445
2000 1755.9915 -2082.5343 -2082.5343 11333.481 -11333.481
Loop time of 0.403449 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
2000 1755.9915 -2082.5343 -2082.5343 11333.481 -11333.481
2019 1755.9915 -2213.3066 -2213.3066 8674.2556 -8674.2556
Loop time of 0.0886271 on 1 procs for 19 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
2000 1755.9915 -2082.5343 -2082.5343 11333.481 -11333.481
2010 1761.1094 -2082.1317 -2082.1317 11084.246 -11084.246
2020 1744.6823 -2080.26 -2080.26 11524.056 -11524.056
2030 1808.8206 -2083.6502 -2083.6502 11971.904 -11971.904
2040 1829.9048 -2084.1883 -2084.1883 12142.306 -12142.306
2050 1836.4413 -2083.8244 -2083.8244 12001.056 -12001.056
2060 1781.8854 -2079.486 -2079.486 11768.476 -11768.476
2070 1794.7673 -2079.6173 -2079.6173 12166.543 -12166.543
2080 1873.1739 -2084.0683 -2084.0683 12126.602 -12126.602
2090 1821.6532 -2080.0204 -2080.0204 12255.663 -12255.663
2100 1802.2063 -2078.1614 -2078.1614 11727.78 -11727.78
Loop time of 0.405431 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
2100 1802.2063 -2078.1614 -2078.1614 11727.78 -11727.78
2119 1802.2063 -2213.2929 -2213.2929 8991.4741 -8991.4741
Loop time of 0.0735719 on 1 procs for 19 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
2100 1802.2063 -2082.9637 -2082.9637 11520.819 -11520.819
2110 1793.1593 -2081.8009 -2081.8009 11125.958 -11125.958
2120 1754.5303 -2078.6831 -2078.6831 11793.164 -11793.164
2130 1786.5596 -2080.1874 -2080.1874 11778.309 -11778.309
2140 1817.4038 -2081.5833 -2081.5833 12754.803 -12754.803
2150 1860.3499 -2083.7984 -2083.7984 13352.499 -13352.499
2160 1855.8568 -2082.9459 -2082.9459 13288.364 -13288.364
2170 1842.645 -2081.6082 -2081.6082 12420.723 -12420.723
2180 1798.1901 -2078.2551 -2078.2551 12701.879 -12701.879
2190 1850.2207 -2081.2903 -2081.2903 12735.397 -12735.397
2200 1855.7827 -2081.2935 -2081.2935 13374.582 -13374.582
Loop time of 0.40466 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
2200 1855.7827 -2081.2935 -2081.2935 13374.582 -13374.582
2219 1855.7827 -2213.3068 -2213.3068 9361.4835 -9361.4835
Loop time of 0.084995 on 1 procs for 19 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
2200 1855.7827 -2081.2935 -2081.2935 13374.582 -13374.582
2210 1695.2731 -2082.804 -2082.804 12630.321 -12630.321
2220 1800.3325 -2082.439 -2082.439 12850.891 -12850.891
2230 1770.4518 -2080.0844 -2080.0844 12724.119 -12724.119
2240 1806.8299 -2080.0756 -2080.0756 12814.992 -12814.992
2250 1912.2973 -2087.0341 -2087.0341 13273.364 -13273.364
2260 1741.8142 -2082.7771 -2082.7771 11373.1 -11373.1
2270 1791.5148 -2081.7326 -2081.7326 11674.374 -11674.374
2280 1809.6684 -2081.8344 -2081.8344 12620.287 -12620.287
2290 1801.0314 -2081.3547 -2081.3547 12248.713 -12248.713
2300 1828.8191 -2082.6771 -2082.6771 12396.637 -12396.637
Loop time of 0.405195 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
2200 1828.8191 -2082.6771 -2082.6771 12396.637 -12396.637
2210 1852.3889 -2083.6639 -2083.6639 13257.91 -13257.91
2220 1861.8897 -2083.7723 -2083.7723 13370.054 -13370.054
2230 1788.0538 -2078.4361 -2078.4361 13998.855 -13998.855
2240 1794.212 -2078.3662 -2078.3662 13775.655 -13775.655
2250 1866.778 -2082.65 -2082.65 13506.462 -13506.462
2260 1839.2432 -2080.3603 -2080.3603 13172.468 -13172.468
2270 1839.9435 -2079.9745 -2079.9745 14361.753 -14361.753
2280 1887.7781 -2082.7306 -2082.7306 14552.554 -14552.554
2290 1925.7098 -2084.9175 -2084.9175 14519.907 -14519.907
2300 1916.0079 -2084.1046 -2084.1046 14584.913 -14584.913
Loop time of 0.404936 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
2300 1916.0079 -2084.1046 -2084.1046 14584.913 -14584.913
2319 1916.0079 -2213.2993 -2213.2993 9773.1171 -9773.1171
Loop time of 0.088567 on 1 procs for 19 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
2300 1916.0079 -2088.3257 -2088.3257 13764.179 -13764.179
2310 1814.5886 -2081.586 -2081.586 14763.224 -14763.224
2320 1875.0182 -2085.6036 -2085.6036 14365.334 -14365.334
2330 1859.2579 -2084.6751 -2084.6751 13654.954 -13654.954
2340 1774.0363 -2079.2509 -2079.2509 12594.742 -12594.742
2350 1753.4548 -2078.1016 -2078.1016 12122.001 -12122.001
2360 1688.1782 -2073.9515 -2073.9515 10903.365 -10903.365
2370 1699.8238 -2074.7632 -2074.7632 10769.884 -10769.884
2380 1806.129 -2081.7078 -2081.7078 11357.625 -11357.625
2390 1837.812 -2083.7012 -2083.7012 13519.308 -13519.308
2400 1826.2652 -2082.8658 -2082.8658 15180.439 -15180.439
Loop time of 0.405483 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
2400 1826.2652 -2082.8658 -2082.8658 15180.439 -15180.439
2417 1826.2652 -2213.3092 -2213.3092 9155.6156 -9155.6156
Loop time of 0.069629 on 1 procs for 17 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
2400 1826.2652 -2082.8658 -2082.8658 15180.439 -15180.439
2410 1765.7942 -2081.0768 -2081.0768 12933.963 -12933.963
2420 1824.4274 -2082.5842 -2082.5842 13311.919 -13311.919
2430 1880.4116 -2087.8123 -2087.8123 12328.175 -12328.175
2440 1720.9864 -2082.5145 -2082.5145 12731.77 -12731.77
2450 1806.7242 -2082.7946 -2082.7946 12945.304 -12945.304
2460 1831.3683 -2084.6693 -2084.6693 13773.335 -13773.335
2470 1818.9364 -2085.7078 -2085.7078 13027.028 -13027.028
2480 1822.7531 -2086.9924 -2086.9924 12394.215 -12394.215
2490 1776.8696 -2085.2206 -2085.2206 12737.989 -12737.989
2500 1851.6152 -2088.3462 -2088.3462 12516.663 -12516.663
Loop time of 0.402492 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
2400 1851.6152 -2088.3462 -2088.3462 12516.663 -12516.663
2410 1786.5123 -2083.7928 -2083.7928 12797.716 -12797.716
2420 1780.159 -2083.1059 -2083.1059 13333.963 -13333.963
2430 1765.7236 -2081.8298 -2081.8298 13096.054 -13096.054
2440 1746.165 -2080.1478 -2080.1478 12767.858 -12767.858
2450 1827.0178 -2084.9985 -2084.9985 12818.323 -12818.323
2460 1848.5558 -2085.9208 -2085.9208 12742.955 -12742.955
2470 1705.6862 -2076.0101 -2076.0101 13465.144 -13465.144
2480 1755.6215 -2078.7318 -2078.7318 12536.565 -12536.565
2490 1899.8246 -2087.5597 -2087.5597 12201.591 -12201.591
2500 1793.6778 -2079.9054 -2079.9054 13211.504 -13211.504
Loop time of 0.404193 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
2500 1793.6778 -2079.9054 -2079.9054 13211.504 -13211.504
2519 1793.6778 -2213.2913 -2213.2913 8942.3029 -8942.3029
Loop time of 0.0842662 on 1 procs for 19 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
2500 1793.6778 -2085.5282 -2085.5282 13329.786 -13329.786
2510 1813.0407 -2086.1987 -2086.1987 13104.609 -13104.609
2520 1787.2892 -2083.8682 -2083.8682 13292.371 -13292.371
2530 1809.8629 -2084.7137 -2084.7137 12551.343 -12551.343
2540 1805.5762 -2083.7605 -2083.7605 13063.749 -13063.749
2550 1793.2104 -2082.2809 -2082.2809 12744.592 -12744.592
2560 1770.3168 -2080.0819 -2080.0819 11764.673 -11764.673
2570 1790.0827 -2080.6602 -2080.6602 11962.803 -11962.803
2580 1819.1303 -2081.8151 -2081.8151 12532.765 -12532.765
2590 1824.7175 -2081.4349 -2081.4349 13202.784 -13202.784
2600 1825.2987 -2080.7548 -2080.7548 14306.382 -14306.382
Loop time of 0.40211 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
2600 1825.2987 -2080.7548 -2080.7548 14306.382 -14306.382
2618 1825.2987 -2213.3059 -2213.3059 9150.7731 -9150.7731
Loop time of 0.0760348 on 1 procs for 18 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
2600 1825.2987 -2080.7548 -2080.7548 14306.382 -14306.382
2610 1784.9821 -2080.6813 -2080.6813 12985.059 -12985.059
2620 1843.7523 -2082.8626 -2082.8626 12889.055 -12889.055
2630 1800.4269 -2082.209 -2082.209 13818.476 -13818.476
2640 1839.5397 -2084.1465 -2084.1465 13399.821 -13399.821
2650 1821.0879 -2084.8907 -2084.8907 13328.045 -13328.045
2660 1789.0961 -2083.5551 -2083.5551 12582.728 -12582.728
2670 1783.3233 -2081.837 -2081.837 12501.936 -12501.936
2680 1951.4454 -2091.2365 -2091.2365 12332.666 -12332.666
2690 1713.8438 -2085.0703 -2085.0703 10952.772 -10952.772
2700 1754.4056 -2081.5244 -2081.5244 10044.432 -10044.432
Loop time of 0.400073 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
2600 1754.4056 -2081.5244 -2081.5244 10044.432 -10044.432
2610 1751.1104 -2080.7397 -2080.7397 9944.2439 -9944.2439
2620 1793.1869 -2082.8983 -2082.8983 10283.032 -10283.032
2630 1753.7841 -2079.6747 -2079.6747 9864.1828 -9864.1828
2640 1634.5724 -2071.1529 -2071.1529 9893.7968 -9893.7968
2650 1767.151 -2079.1178 -2079.1178 10547.214 -10547.214
2660 1871.7471 -2085.1534 -2085.1534 12009.968 -12009.968
2670 1821.4368 -2081.0824 -2081.0824 14019.852 -14019.852
2680 1871.8392 -2083.7726 -2083.7726 14367.625 -14367.625
2690 1959.1372 -2089.0439 -2089.0439 12166.14 -12166.14
2700 1828.2882 -2080.1299 -2080.1299 12793.753 -12793.753
Loop time of 0.403463 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
2700 1828.2882 -2080.1299 -2080.1299 12793.753 -12793.753
2721 1828.2882 -2213.3285 -2213.3285 9173.7894 -9173.7894
Loop time of 0.0975671 on 1 procs for 21 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
2700 1828.2882 -2080.1299 -2080.1299 12793.753 -12793.753
2710 1816.4004 -2079.1813 -2079.1813 11823.058 -11823.058
2720 1877.706 -2083.108 -2083.108 10556.298 -10556.298
2730 1775.5997 -2076.3317 -2076.3317 11741.929 -11741.929
2740 1755.1843 -2074.9343 -2074.9343 12585.733 -12585.733
2750 1864.4172 -2082.0747 -2082.0747 11527.238 -11527.238
2760 1792.1277 -2077.2833 -2077.2833 11836.835 -11836.835
2770 1748.8951 -2074.4154 -2074.4154 11324.664 -11324.664
2780 1835.5108 -2080.0744 -2080.0744 10942.566 -10942.566
2790 1851.8779 -2081.1448 -2081.1448 11080.974 -11080.974
2800 1747.4946 -2074.2759 -2074.2759 12177.968 -12177.968
Loop time of 0.406304 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
2800 1747.4946 -2074.2759 -2074.2759 12177.968 -12177.968
2818 1747.4946 -2213.2785 -2213.2785 8613.9615 -8613.9615
Loop time of 0.076628 on 1 procs for 18 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
2800 1747.4946 -2074.2759 -2074.2759 12177.968 -12177.968
2810 1863.2903 -2081.9222 -2081.9222 12267.805 -12267.805
2820 1914.2959 -2085.354 -2085.354 13681.201 -13681.201
2830 1858.6704 -2081.8678 -2081.8678 14955.854 -14955.854
2840 1919.1063 -2086.1193 -2086.1193 13785.748 -13785.748
2850 1961.8598 -2089.3537 -2089.3537 12806.759 -12806.759
2860 1791.6941 -2078.6502 -2078.6502 12300.141 -12300.141
2870 1706.8756 -2073.4991 -2073.4991 11049.969 -11049.969
2880 1761.9399 -2077.4437 -2077.4437 10260.512 -10260.512
2890 1746.8886 -2076.6825 -2076.6825 10092.346 -10092.346
2900 1672.4156 -2071.8929 -2071.8929 10600.89 -10600.89
Loop time of 0.405212 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
2900 1672.4156 -2071.8929 -2071.8929 10600.89 -10600.89
2917 1672.4156 -2213.2396 -2213.2396 8097.4138 -8097.4138
Loop time of 0.070478 on 1 procs for 17 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
2900 1672.4156 -2071.8929 -2071.8929 10600.89 -10600.89
2910 1777.2823 -2078.8099 -2078.8099 11179.362 -11179.362
2920 1855.0223 -2083.8989 -2083.8989 11882.495 -11882.495
2930 1822.0838 -2081.7366 -2081.7366 13823.043 -13823.043
2940 1895.6335 -2086.6487 -2086.6487 14884.575 -14884.575
2950 1981.0864 -2092.5002 -2092.5002 14084.26 -14084.26
2960 1845.9932 -2083.9972 -2083.9972 12386.166 -12386.166
2970 1761.7427 -2078.8941 -2078.8941 11938.071 -11938.071
2980 1795.2713 -2081.5266 -2081.5266 11328.682 -11328.682
2990 1732.1529 -2077.755 -2077.755 11706.457 -11706.457
3000 1671.6507 -2074.0434 -2074.0434 11937.414 -11937.414
Loop time of 0.405487 on 1 procs for 100 steps with 511 atoms
Memory usage per processor = 3.96001 Mbytes
Step Temp PotEng pe Press press
3000 1671.6507 -2074.0434 -2074.0434 11937.414 -11937.414
3018 1671.6507 -2213.2792 -2213.2792 8092.9613 -8092.9613
Loop time of 0.07939 on 1 procs for 18 steps with 511 atoms
Memory usage per processor = 3.27337 Mbytes
Step Temp PotEng pe Press press
3000 1671.6507 -2080.3808 -2080.3808 12813.976 -12813.976
Loop time of 13.0158 on 1 procs for 18 steps with 511 atoms
PRD stats:
Dephase time (%) = 2.81364 (21.6171)
Dynamics time (%) = 8.09516 (62.1948)
Quench time (%) = 1.61517 (12.4093)
Other time (%) = 0.269654 (2.07174)
Nlocal: 511 ave 511 max 511 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Nghost: 1017 ave 1017 max 1017 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Neighs: 0 ave 0 max 0 min
Histogram: 1 0 0 0 0 0 0 0 0 0
FullNghs: 13428 ave 13428 max 13428 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Total # of neighbors = 13428
Ave neighs/atom = 26.2779
Neighbor list builds = 96
Dangerous builds = 0