From 17411d1369045fbb82a0c2ef55ef94d3fb88e080 Mon Sep 17 00:00:00 2001
From: sjplimp <sjplimp@f3b2605a-c512-4ea7-a41b-209d697bcdaa>
Date: Thu, 19 Feb 2009 16:40:15 +0000
Subject: [PATCH] git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@2597
 f3b2605a-c512-4ea7-a41b-209d697bcdaa

---
 doc/neigh_modify.html | 33 +++++++++++++++++++++------------
 doc/neigh_modify.txt  | 33 +++++++++++++++++++--------------
 2 files changed, 40 insertions(+), 26 deletions(-)

diff --git a/doc/neigh_modify.html b/doc/neigh_modify.html
index c36fcb4ff9..ecf6a0312d 100644
--- a/doc/neigh_modify.html
+++ b/doc/neigh_modify.html
@@ -17,7 +17,7 @@
 </PRE>
 <UL><LI>one or more keyword/value pairs may be listed 
 
-<PRE>keyword = <I>delay</I> or <I>every</I> or <I>check</I> or <I>include</I> or <I>exclude</I> or <I>page</I> or <I>one</I> or <I>binsize</I>
+<PRE>keyword = <I>delay</I> or <I>every</I> or <I>check</I> or <I>once</I> or <I>include</I> or <I>exclude</I> or <I>page</I> or <I>one</I> or <I>binsize</I>
   <I>delay</I> value = N
     N = delay building until this many steps since last build
   <I>every</I> value = M
@@ -25,6 +25,9 @@
   <I>check</I> value = <I>yes</I> or <I>no</I>
     <I>yes</I> = only build if some atom has moved half the skin distance or more
     <I>no</I> = always build on 1st step that <I>every</I> and <I>delay</I> are satisfied
+  <I>once</I>
+    <I>yes</I> = only build neighbor list once at start of run and never rebuild
+    <I>no</I> = rebuild neighbor list according to other settings
   <I>include</I> value = group-ID
     group-ID = only build pair neighbor lists for atoms in this group
   <I>exclude</I> values:
@@ -59,15 +62,21 @@ neigh_modify exclude molecule rigid
 <P>This command sets parameters that affect the building and use of
 pairwise neighbor lists.
 </P>
-<P>The <I>every</I>, <I>delay</I>, and <I>check</I> options affect how often lists are
-built as a simulation runs.  The <I>delay</I> setting means never build a
-new list until at least N steps after the previous build.  The <I>every</I>
-setting means build the list every M steps (after the delay has
-passed).  If the <I>check</I> setting is <I>no</I>, the list is built on the 1st
-step that satisfies the <I>delay</I> and <I>every</I> settings.  If the <I>check</I>
-setting is <I>yes</I>, then the list is only built on a particular step if
-some atom has moved more than half the skin distance (specified in the
-<A HREF = "neighbor.html">neighbor</A> command) since the last build.
+<P>The <I>every</I>, <I>delay</I>, <I>check</I>, and <I>once</I> options affect how often
+lists are built as a simulation runs.  The <I>delay</I> setting means never
+build a new list until at least N steps after the previous build.  The
+<I>every</I> setting means build the list every M steps (after the delay
+has passed).  If the <I>check</I> setting is <I>no</I>, the list is built on the
+1st step that satisfies the <I>delay</I> and <I>every</I> settings.  If the
+<I>check</I> setting is <I>yes</I>, then the list is only built on a particular
+step if some atom has moved more than half the skin distance
+(specified in the <A HREF = "neighbor.html">neighbor</A> command) since the last
+build. If the <I>once</I> setting is yes, then the neighbor list is only
+built once at the beginning of each run, and never rebuilt.  This
+should only be done if you are certain atoms will not move far enough
+that the list should be rebuilt.  E.g. running a simulation of a cold
+crystal.  Note that it is not that expensive to check if neighbor
+lists should be rebuilt.
 </P>
 <P>When the rRESPA integrator is used (see the <A HREF = "run_style.html">run_style</A>
 command), the <I>every</I> and <I>delay</I> parameters refer to the longest
@@ -156,7 +165,7 @@ space.
 </P>
 <P><B>Default:</B>
 </P>
-<P>The option defaults are delay = 10, every = 1, check = yes, include =
-all, exclude = none, page = 100000, one = 2000, and binsize = 0.0.
+<P>The option defaults are delay = 10, every = 1, check = yes, once = no,
+include = all, exclude = none, page = 100000, one = 2000, and binsize = 0.0.
 </P>
 </HTML>
diff --git a/doc/neigh_modify.txt b/doc/neigh_modify.txt
index e8c548df03..6fa5ca012a 100644
--- a/doc/neigh_modify.txt
+++ b/doc/neigh_modify.txt
@@ -13,7 +13,7 @@ neigh_modify command :h3
 neigh_modify keyword values ... :pre
 
 one or more keyword/value pairs may be listed :ulb,l
-keyword = {delay} or {every} or {check} or {include} or {exclude} or {page} or {one} or {binsize} or {once}
+keyword = {delay} or {every} or {check} or {once} or {include} or {exclude} or {page} or {one} or {binsize}
   {delay} value = N
     N = delay building until this many steps since last build
   {every} value = M
@@ -21,6 +21,9 @@ keyword = {delay} or {every} or {check} or {include} or {exclude} or {page} or {
   {check} value = {yes} or {no}
     {yes} = only build if some atom has moved half the skin distance or more
     {no} = always build on 1st step that {every} and {delay} are satisfied
+  {once}
+    {yes} = only build neighbor list once at start of run and never rebuild
+    {no} = rebuild neighbor list according to other settings
   {include} value = group-ID
     group-ID = only build pair neighbor lists for atoms in this group
   {exclude} values:
@@ -38,9 +41,6 @@ keyword = {delay} or {every} or {check} or {include} or {exclude} or {page} or {
     N = max number of neighbors of one atom :pre
   {binsize} value = size
     size = bin size for neighbor list construction (distance units) :pre
-  {once}
-    {yes} = only build neighbor list once at start and never rebuild
-    {no} = rebuild neighbor list according to other settings
 :ule
 
 [Examples:]
@@ -56,16 +56,21 @@ neigh_modify exclude molecule rigid :pre
 This command sets parameters that affect the building and use of
 pairwise neighbor lists.
 
-The {every}, {delay}, {check}, and {once} options affect how often lists are
-built as a simulation runs.  The {delay} setting means never build a
-new list until at least N steps after the previous build.  The {every}
-setting means build the list every M steps (after the delay has
-passed).  If the {check} setting is {no}, the list is built on the 1st
-step that satisfies the {delay} and {every} settings.  If the {check}
-setting is {yes}, then the list is only built on a particular step if
-some atom has moved more than half the skin distance (specified in the
-"neighbor"_neighbor.html command) since the last build. If the {build} 
-setting is yes, then the neighbor list is never rebuilt.
+The {every}, {delay}, {check}, and {once} options affect how often
+lists are built as a simulation runs.  The {delay} setting means never
+build a new list until at least N steps after the previous build.  The
+{every} setting means build the list every M steps (after the delay
+has passed).  If the {check} setting is {no}, the list is built on the
+1st step that satisfies the {delay} and {every} settings.  If the
+{check} setting is {yes}, then the list is only built on a particular
+step if some atom has moved more than half the skin distance
+(specified in the "neighbor"_neighbor.html command) since the last
+build. If the {once} setting is yes, then the neighbor list is only
+built once at the beginning of each run, and never rebuilt.  This
+should only be done if you are certain atoms will not move far enough
+that the list should be rebuilt.  E.g. running a simulation of a cold
+crystal.  Note that it is not that expensive to check if neighbor
+lists should be rebuilt.
 
 When the rRESPA integrator is used (see the "run_style"_run_style.html
 command), the {every} and {delay} parameters refer to the longest