diff --git a/doc/Eqs/README b/doc/Eqs/README
new file mode 100644
index 0000000000..40a1756e46
--- /dev/null
+++ b/doc/Eqs/README
@@ -0,0 +1,3 @@
+create a DVI file for any LaTeX eq file
+
+latex angle_class2
diff --git a/doc/Eqs/Script.create b/doc/Eqs/Script.create
deleted file mode 100755
index 3512fabb23..0000000000
--- a/doc/Eqs/Script.create
+++ /dev/null
@@ -1,60 +0,0 @@
-# create dvi files for every LaTex eq
-
-latex angle_charmm
-latex angle_class2
-latex angle_cosine
-latex angle_cosine_delta
-latex angle_cosine_squared
-latex angle_harmonic
-latex bond_class2
-latex bond_fene
-latex bond_fene_expand
-latex bond_harmonic
-latex bond_morse
-latex bond_nonlinear
-latex bond_quartic
-latex centro_symmetry
-latex dihedral_charmm
-latex dihedral_class2
-latex dihedral_harmonic
-latex dihedral_helix
-latex dihedral_multiharmonic
-latex dihedral_opls
-latex fix_gyration
-latex fix_orient_fcc
-latex fix_spring_rg
-latex fix_wall_lj93
-latex improper_class2
-latex improper_cvff
-latex improper_harmonic
-latex pair_airebo
-latex pair_buck
-latex pair_charmm
-latex pair_class2
-latex pair_cmm
-latex pair_colloid_cc
-latex pair_colloid_cs
-latex pair_colloid_ss
-latex pair_coulomb
-latex pair_debye
-latex pair_dipole
-latex pair_dpd
-latex pair_eam
-latex pair_eam_fs
-latex pair_granular
-latex pair_lj
-latex pair_lj_expand
-latex pair_lj_smooth
-latex pair_lubricate
-latex pair_meam
-latex pair_morse
-latex pair_resquared
-latex pair_resquared2
-latex pair_resquared3
-latex pair_resquared4
-latex pair_soft
-latex pair_sw
-latex pair_tersoff
-latex pair_yukawa
-latex pressure
-latex stress_tensor
diff --git a/doc/Manual.pdf b/doc/Manual.pdf
index 312812812d..5bbf6f9348 100644
Binary files a/doc/Manual.pdf and b/doc/Manual.pdf differ
diff --git a/doc/Eqs/pair_gayberne_extra.pdf b/doc/PDF/pair_gayberne_extra.pdf
similarity index 100%
rename from doc/Eqs/pair_gayberne_extra.pdf
rename to doc/PDF/pair_gayberne_extra.pdf
diff --git a/doc/Eqs/pair_resquared_extra.pdf b/doc/PDF/pair_resquared_extra.pdf
similarity index 100%
rename from doc/Eqs/pair_resquared_extra.pdf
rename to doc/PDF/pair_resquared_extra.pdf