diff --git a/doc/src/PDF/CG-DNA.pdf b/doc/src/PDF/CG-DNA.pdf index 632df1fdff..b4a33072b2 100644 Binary files a/doc/src/PDF/CG-DNA.pdf and b/doc/src/PDF/CG-DNA.pdf differ diff --git a/doc/src/bond_oxdna.rst b/doc/src/bond_oxdna.rst index f863c0e98f..1bce606da7 100644 --- a/doc/src/bond_oxdna.rst +++ b/doc/src/bond_oxdna.rst @@ -99,10 +99,10 @@ duplexes or arrays of DNA/RNA duplexes can be found in examples/PACKAGES/cgdna/util/. Please cite :ref:`(Henrich) ` in any publication that uses -this implementation. The article contains general information +this implementation. An updated documentation that contains general information on the model, its implementation and performance as well as the structure of -the data and input file. The preprint version of the article can be found -`here `_. +the data and input file can be found `here `_. + Please cite also the relevant oxDNA/oxRNA publications. These are :ref:`(Ouldridge) ` and :ref:`(Ouldridge-DPhil) ` for oxDNA, diff --git a/doc/src/pair_oxdna.rst b/doc/src/pair_oxdna.rst index fcc7dc2e49..dab1c2a230 100644 --- a/doc/src/pair_oxdna.rst +++ b/doc/src/pair_oxdna.rst @@ -104,10 +104,10 @@ A simple python setup tool which creates single straight or helical DNA strands, DNA duplexes or arrays of DNA duplexes can be found in examples/PACKAGES/cgdna/util/. Please cite :ref:`(Henrich) ` in any publication that uses -this implementation. The article contains general information +this implementation. An updated documentation that contains general information on the model, its implementation and performance as well as the structure of -the data and input file. The preprint version of the article can be found -`here `_. +the data and input file can be found `here `_. + Please cite also the relevant oxDNA publications :ref:`(Ouldridge) `, :ref:`(Ouldridge-DPhil) ` diff --git a/doc/src/pair_oxdna2.rst b/doc/src/pair_oxdna2.rst index f253c4ae10..5cac7d8f77 100644 --- a/doc/src/pair_oxdna2.rst +++ b/doc/src/pair_oxdna2.rst @@ -113,10 +113,10 @@ A simple python setup tool which creates single straight or helical DNA strands, DNA duplexes or arrays of DNA duplexes can be found in examples/PACKAGES/cgdna/util/. Please cite :ref:`(Henrich) ` in any publication that uses -this implementation. The article contains general information +this implementation. An updated documentation that contains general information on the model, its implementation and performance as well as the structure of -the data and input file. The preprint version of the article can be found -`here `_. +the data and input file can be found `here `_. + Please cite also the relevant oxDNA2 publications :ref:`(Snodin) ` and :ref:`(Sulc) `.