git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@5715 f3b2605a-c512-4ea7-a41b-209d697bcdaa

This commit is contained in:
sjplimp
2011-02-22 22:35:22 +00:00
parent f50885fd46
commit 1d4a6440d1
57 changed files with 57130 additions and 0 deletions

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Created using cfg2lammps (c) AJB-2009
13 atoms
3 atom types
-1000.000 1000.0 xlo xhi
-1000.000 1000.0 ylo yhi
-1000.000 1000.0 zlo zhi
Masses
1 9.012182
2 1.007940
3 1.000000
Atoms
1 1 4.00 3 1.691398 0.000000 0.000000 0.000000
2 2 1.00 0 0.0 -1.619843 1.619843 1.619843
3 2 1.00 0 0.0 -1.619843 -1.619843 -1.619843
4 2 1.00 0 0.0 1.619843 1.619843 -1.619843
5 2 1.00 0 0.0 1.619843 -1.619843 1.619843
6 3 0.0 1 1.984000 -1.145229 1.145229 1.145229
7 3 0.0 -1 1.984000 -1.145229 1.145229 1.145229
8 3 0.0 1 1.984000 -1.145229 -1.145229 -1.145229
9 3 0.0 -1 1.984000 -1.145229 -1.145229 -1.145229
10 3 0.0 1 1.984000 1.145229 1.145229 -1.145229
11 3 0.0 -1 1.984000 1.145229 1.145229 -1.145229
12 3 0.0 1 1.984000 1.145229 -1.145229 1.145229
13 3 0.0 -1 1.984000 1.145229 -1.145229 1.145229

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Created using cfg2lammps (c) AJB-2009
13 atoms
3 atom types
-529.177249 529.177249 xlo xhi
-529.177249 529.177249 ylo yhi
-529.177249 529.177249 zlo zhi
Masses
1 9.012182
2 1.007940
3 1.000000
Atoms
1 1 4.00 3 0.895049 0.000000 0.000000 0.000000
2 2 1.00 0 0.000000 -0.857184 0.857184 0.857184
3 2 1.00 0 0.000000 -0.857184 -0.857184 -0.857184
4 2 1.00 0 0.000000 0.857184 0.857184 -0.857184
5 2 1.00 0 0.000000 0.857184 -0.857184 0.857184
6 3 0.0 1 1.049888 -0.606029 0.606029 0.606029
7 3 0.0 -1 1.049888 -0.606029 0.606029 0.606029
8 3 0.0 1 1.049888 -0.606029 -0.606029 -0.606029
9 3 0.0 -1 1.049888 -0.606029 -0.606029 -0.606029
10 3 0.0 1 1.049888 0.606029 0.606029 -0.606029
11 3 0.0 -1 1.049888 0.606029 0.606029 -0.606029
12 3 0.0 1 1.049888 0.606029 -0.606029 0.606029
13 3 0.0 -1 1.049888 0.606029 -0.606029 0.606029

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# Created 2011-01-07
# General parameters
variable sname index SiH4
log ${sname}.log
units electron
newton on
boundary f f f
special_bonds coul 1 0 0
atom_style electron
read_data data.${sname}
pair_style eff/cut 1000.0
pair_coeff * *
compute energies all pair eff/cut
variable eke equal c_energies[1]
variable epauli equal c_energies[2]
variable estatics equal c_energies[3]
variable errestrain equal c_energies[4]
communicate single vel yes
compute peratom all stress/atom
compute p all reduce sum c_peratom[1] c_peratom[2] c_peratom[3]
variable press equal -(c_p[1]+c_p[2]+c_p[3])/(3*vol)
compute effTemp all temp/eff
compute effPress all pressure effTemp
thermo 1
thermo_style custom step etotal pe ke v_eke v_epauli v_estatics v_errestrain temp press v_press
thermo_modify temp effTemp press effPress
# Minimization
min_style cg
dump 1 all xyz 1 ${sname}.min.xyz
dump 2 all custom 1 ${sname}.min.lammpstrj id type q spin eradius x y z fx fy fz erforce
min_modify line quadratic
minimize 0 1.0e-5 1000 10000
undump 1
undump 2

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# Created 2011-01-07
# General parameters
variable sname index SiH4.ang
log ${sname}.log
units real
newton on
boundary f f f
atom_style electron
read_data data.${sname}
pair_style eff/cut 529.177249
pair_coeff * *
compute energies all pair eff/cut
variable eke equal c_energies[1]
variable epauli equal c_energies[2]
variable estatics equal c_energies[3]
variable errestrain equal c_energies[4]
communicate single vel yes
compute peratom all stress/atom
compute p all reduce sum c_peratom[1] c_peratom[2] c_peratom[3]
variable press equal -(c_p[1]+c_p[2]+c_p[3])/(3*vol)
compute effTemp all temp/eff
compute effPress all pressure effTemp
thermo 1
thermo_style custom step etotal pe ke v_eke v_epauli v_estatics v_errestrain temp press v_press
thermo_modify temp effTemp press effPress
# Minimization
min_style cg
dump 1 all xyz 1 ${sname}.min.xyz
dump 2 all custom 1 ${sname}.min.lammpstrj id type q spin eradius x y z fx fy fz erforce
min_modify line quadratic
minimize 0 1.0e-5 1000 10000
undump 1
undump 2