diff --git a/examples/USER/misc/bond_react/nylon,6-6_melt/large_nylon_melt.data.gz b/examples/USER/misc/bond_react/nylon,6-6_melt/large_nylon_melt.data.gz deleted file mode 100644 index c620b879a8..0000000000 Binary files a/examples/USER/misc/bond_react/nylon,6-6_melt/large_nylon_melt.data.gz and /dev/null differ diff --git a/examples/USER/misc/bond_react/nylon,6-6_melt/in.large_nylon_melt b/examples/USER/react/nylon,6-6_melt/in.large_nylon_melt similarity index 100% rename from examples/USER/misc/bond_react/nylon,6-6_melt/in.large_nylon_melt rename to examples/USER/react/nylon,6-6_melt/in.large_nylon_melt diff --git a/examples/USER/misc/bond_react/nylon,6-6_melt/log.20Apr18.large_nylon_melt.g++.1 b/examples/USER/react/nylon,6-6_melt/log.20Apr18.large_nylon_melt.g++.1 similarity index 100% rename from examples/USER/misc/bond_react/nylon,6-6_melt/log.20Apr18.large_nylon_melt.g++.1 rename to examples/USER/react/nylon,6-6_melt/log.20Apr18.large_nylon_melt.g++.1 diff --git a/examples/USER/misc/bond_react/nylon,6-6_melt/log.20Apr18.large_nylon_melt.g++.4 b/examples/USER/react/nylon,6-6_melt/log.20Apr18.large_nylon_melt.g++.4 similarity index 100% rename from examples/USER/misc/bond_react/nylon,6-6_melt/log.20Apr18.large_nylon_melt.g++.4 rename to examples/USER/react/nylon,6-6_melt/log.20Apr18.large_nylon_melt.g++.4 diff --git a/examples/USER/misc/bond_react/nylon,6-6_melt/rxn1_stp1_map b/examples/USER/react/nylon,6-6_melt/rxn1_stp1_map similarity index 100% rename from examples/USER/misc/bond_react/nylon,6-6_melt/rxn1_stp1_map rename to examples/USER/react/nylon,6-6_melt/rxn1_stp1_map diff --git a/examples/USER/misc/bond_react/nylon,6-6_melt/rxn1_stp1_reacted.data_template b/examples/USER/react/nylon,6-6_melt/rxn1_stp1_reacted.data_template similarity index 100% rename from examples/USER/misc/bond_react/nylon,6-6_melt/rxn1_stp1_reacted.data_template rename to examples/USER/react/nylon,6-6_melt/rxn1_stp1_reacted.data_template diff --git a/examples/USER/misc/bond_react/nylon,6-6_melt/rxn1_stp1_unreacted.data_template b/examples/USER/react/nylon,6-6_melt/rxn1_stp1_unreacted.data_template similarity index 100% rename from examples/USER/misc/bond_react/nylon,6-6_melt/rxn1_stp1_unreacted.data_template rename to examples/USER/react/nylon,6-6_melt/rxn1_stp1_unreacted.data_template diff --git a/examples/USER/misc/bond_react/nylon,6-6_melt/rxn1_stp2_map b/examples/USER/react/nylon,6-6_melt/rxn1_stp2_map similarity index 100% rename from examples/USER/misc/bond_react/nylon,6-6_melt/rxn1_stp2_map rename to examples/USER/react/nylon,6-6_melt/rxn1_stp2_map diff --git a/examples/USER/misc/bond_react/nylon,6-6_melt/rxn1_stp2_reacted.data_template b/examples/USER/react/nylon,6-6_melt/rxn1_stp2_reacted.data_template similarity index 100% rename from examples/USER/misc/bond_react/nylon,6-6_melt/rxn1_stp2_reacted.data_template rename to examples/USER/react/nylon,6-6_melt/rxn1_stp2_reacted.data_template diff --git a/examples/USER/misc/bond_react/nylon,6-6_melt/rxn1_stp2_unreacted.data_template b/examples/USER/react/nylon,6-6_melt/rxn1_stp2_unreacted.data_template similarity index 100% rename from examples/USER/misc/bond_react/nylon,6-6_melt/rxn1_stp2_unreacted.data_template rename to examples/USER/react/nylon,6-6_melt/rxn1_stp2_unreacted.data_template diff --git a/examples/USER/misc/bond_react/tiny_epoxy/in.tiny_epoxy.stabilized b/examples/USER/react/tiny_epoxy/in.tiny_epoxy.stabilized similarity index 100% rename from examples/USER/misc/bond_react/tiny_epoxy/in.tiny_epoxy.stabilized rename to examples/USER/react/tiny_epoxy/in.tiny_epoxy.stabilized diff --git a/examples/USER/misc/bond_react/tiny_epoxy/log.20Nov19.tiny_epoxy.stabilized.g++.1 b/examples/USER/react/tiny_epoxy/log.20Nov19.tiny_epoxy.stabilized.g++.1 similarity index 100% rename from examples/USER/misc/bond_react/tiny_epoxy/log.20Nov19.tiny_epoxy.stabilized.g++.1 rename to examples/USER/react/tiny_epoxy/log.20Nov19.tiny_epoxy.stabilized.g++.1 diff --git a/examples/USER/misc/bond_react/tiny_epoxy/log.20Nov19.tiny_epoxy.stabilized.g++.4 b/examples/USER/react/tiny_epoxy/log.20Nov19.tiny_epoxy.stabilized.g++.4 similarity index 100% rename from examples/USER/misc/bond_react/tiny_epoxy/log.20Nov19.tiny_epoxy.stabilized.g++.4 rename to examples/USER/react/tiny_epoxy/log.20Nov19.tiny_epoxy.stabilized.g++.4 diff --git a/examples/USER/misc/bond_react/tiny_epoxy/rxn1_stp1.map b/examples/USER/react/tiny_epoxy/rxn1_stp1.map similarity index 100% rename from examples/USER/misc/bond_react/tiny_epoxy/rxn1_stp1.map rename to examples/USER/react/tiny_epoxy/rxn1_stp1.map diff --git a/examples/USER/misc/bond_react/tiny_epoxy/rxn1_stp1_post.data_template b/examples/USER/react/tiny_epoxy/rxn1_stp1_post.data_template similarity index 100% rename from examples/USER/misc/bond_react/tiny_epoxy/rxn1_stp1_post.data_template rename to examples/USER/react/tiny_epoxy/rxn1_stp1_post.data_template diff --git a/examples/USER/misc/bond_react/tiny_epoxy/rxn1_stp1_pre.data_template b/examples/USER/react/tiny_epoxy/rxn1_stp1_pre.data_template similarity index 100% rename from examples/USER/misc/bond_react/tiny_epoxy/rxn1_stp1_pre.data_template rename to examples/USER/react/tiny_epoxy/rxn1_stp1_pre.data_template diff --git a/examples/USER/misc/bond_react/tiny_epoxy/rxn1_stp2.map b/examples/USER/react/tiny_epoxy/rxn1_stp2.map similarity index 100% rename from examples/USER/misc/bond_react/tiny_epoxy/rxn1_stp2.map rename to examples/USER/react/tiny_epoxy/rxn1_stp2.map diff --git a/examples/USER/misc/bond_react/tiny_epoxy/rxn1_stp2_post.data_template b/examples/USER/react/tiny_epoxy/rxn1_stp2_post.data_template similarity index 100% rename from examples/USER/misc/bond_react/tiny_epoxy/rxn1_stp2_post.data_template rename to examples/USER/react/tiny_epoxy/rxn1_stp2_post.data_template diff --git a/examples/USER/misc/bond_react/tiny_epoxy/rxn2_stp1.map b/examples/USER/react/tiny_epoxy/rxn2_stp1.map similarity index 100% rename from examples/USER/misc/bond_react/tiny_epoxy/rxn2_stp1.map rename to examples/USER/react/tiny_epoxy/rxn2_stp1.map diff --git a/examples/USER/misc/bond_react/tiny_epoxy/rxn2_stp1_post.data_template b/examples/USER/react/tiny_epoxy/rxn2_stp1_post.data_template similarity index 100% rename from examples/USER/misc/bond_react/tiny_epoxy/rxn2_stp1_post.data_template rename to examples/USER/react/tiny_epoxy/rxn2_stp1_post.data_template diff --git a/examples/USER/misc/bond_react/tiny_epoxy/rxn2_stp1_pre.data_template b/examples/USER/react/tiny_epoxy/rxn2_stp1_pre.data_template similarity index 100% rename from examples/USER/misc/bond_react/tiny_epoxy/rxn2_stp1_pre.data_template rename to examples/USER/react/tiny_epoxy/rxn2_stp1_pre.data_template diff --git a/examples/USER/misc/bond_react/tiny_epoxy/rxn2_stp2.map b/examples/USER/react/tiny_epoxy/rxn2_stp2.map similarity index 100% rename from examples/USER/misc/bond_react/tiny_epoxy/rxn2_stp2.map rename to examples/USER/react/tiny_epoxy/rxn2_stp2.map diff --git a/examples/USER/misc/bond_react/tiny_epoxy/rxn2_stp2_post.data_template b/examples/USER/react/tiny_epoxy/rxn2_stp2_post.data_template similarity index 100% rename from examples/USER/misc/bond_react/tiny_epoxy/rxn2_stp2_post.data_template rename to examples/USER/react/tiny_epoxy/rxn2_stp2_post.data_template diff --git a/examples/USER/misc/bond_react/tiny_epoxy/tiny_epoxy.data b/examples/USER/react/tiny_epoxy/tiny_epoxy.data similarity index 100% rename from examples/USER/misc/bond_react/tiny_epoxy/tiny_epoxy.data rename to examples/USER/react/tiny_epoxy/tiny_epoxy.data diff --git a/examples/USER/misc/bond_react/tiny_nylon/in.tiny_nylon.stabilized b/examples/USER/react/tiny_nylon/in.tiny_nylon.stabilized similarity index 100% rename from examples/USER/misc/bond_react/tiny_nylon/in.tiny_nylon.stabilized rename to examples/USER/react/tiny_nylon/in.tiny_nylon.stabilized diff --git a/examples/USER/misc/bond_react/tiny_nylon/in.tiny_nylon.unstabilized b/examples/USER/react/tiny_nylon/in.tiny_nylon.unstabilized similarity index 100% rename from examples/USER/misc/bond_react/tiny_nylon/in.tiny_nylon.unstabilized rename to examples/USER/react/tiny_nylon/in.tiny_nylon.unstabilized diff --git a/examples/USER/misc/bond_react/tiny_nylon/log.5Jun19.tiny_nylon.stabilized.g++.1 b/examples/USER/react/tiny_nylon/log.5Jun19.tiny_nylon.stabilized.g++.1 similarity index 100% rename from examples/USER/misc/bond_react/tiny_nylon/log.5Jun19.tiny_nylon.stabilized.g++.1 rename to examples/USER/react/tiny_nylon/log.5Jun19.tiny_nylon.stabilized.g++.1 diff --git a/examples/USER/misc/bond_react/tiny_nylon/log.5Jun19.tiny_nylon.stabilized.g++.4 b/examples/USER/react/tiny_nylon/log.5Jun19.tiny_nylon.stabilized.g++.4 similarity index 100% rename from examples/USER/misc/bond_react/tiny_nylon/log.5Jun19.tiny_nylon.stabilized.g++.4 rename to examples/USER/react/tiny_nylon/log.5Jun19.tiny_nylon.stabilized.g++.4 diff --git a/examples/USER/misc/bond_react/tiny_nylon/log.5Jun19.tiny_nylon.unstabilized.g++.1 b/examples/USER/react/tiny_nylon/log.5Jun19.tiny_nylon.unstabilized.g++.1 similarity index 100% rename from examples/USER/misc/bond_react/tiny_nylon/log.5Jun19.tiny_nylon.unstabilized.g++.1 rename to examples/USER/react/tiny_nylon/log.5Jun19.tiny_nylon.unstabilized.g++.1 diff --git a/examples/USER/misc/bond_react/tiny_nylon/log.5Jun19.tiny_nylon.unstabilized.g++.4 b/examples/USER/react/tiny_nylon/log.5Jun19.tiny_nylon.unstabilized.g++.4 similarity index 100% rename from examples/USER/misc/bond_react/tiny_nylon/log.5Jun19.tiny_nylon.unstabilized.g++.4 rename to examples/USER/react/tiny_nylon/log.5Jun19.tiny_nylon.unstabilized.g++.4 diff --git a/examples/USER/misc/bond_react/tiny_nylon/rxn1_stp1_map b/examples/USER/react/tiny_nylon/rxn1_stp1_map similarity index 100% rename from examples/USER/misc/bond_react/tiny_nylon/rxn1_stp1_map rename to examples/USER/react/tiny_nylon/rxn1_stp1_map diff --git a/examples/USER/misc/bond_react/tiny_nylon/rxn1_stp1_reacted.data_template b/examples/USER/react/tiny_nylon/rxn1_stp1_reacted.data_template similarity index 100% rename from examples/USER/misc/bond_react/tiny_nylon/rxn1_stp1_reacted.data_template rename to examples/USER/react/tiny_nylon/rxn1_stp1_reacted.data_template diff --git a/examples/USER/misc/bond_react/tiny_nylon/rxn1_stp1_unreacted.data_template b/examples/USER/react/tiny_nylon/rxn1_stp1_unreacted.data_template similarity index 100% rename from examples/USER/misc/bond_react/tiny_nylon/rxn1_stp1_unreacted.data_template rename to examples/USER/react/tiny_nylon/rxn1_stp1_unreacted.data_template diff --git a/examples/USER/misc/bond_react/tiny_nylon/rxn1_stp2_map b/examples/USER/react/tiny_nylon/rxn1_stp2_map similarity index 100% rename from examples/USER/misc/bond_react/tiny_nylon/rxn1_stp2_map rename to examples/USER/react/tiny_nylon/rxn1_stp2_map diff --git a/examples/USER/misc/bond_react/tiny_nylon/rxn1_stp2_reacted.data_template b/examples/USER/react/tiny_nylon/rxn1_stp2_reacted.data_template similarity index 100% rename from examples/USER/misc/bond_react/tiny_nylon/rxn1_stp2_reacted.data_template rename to examples/USER/react/tiny_nylon/rxn1_stp2_reacted.data_template diff --git a/examples/USER/misc/bond_react/tiny_nylon/rxn1_stp2_unreacted.data_template b/examples/USER/react/tiny_nylon/rxn1_stp2_unreacted.data_template similarity index 100% rename from examples/USER/misc/bond_react/tiny_nylon/rxn1_stp2_unreacted.data_template rename to examples/USER/react/tiny_nylon/rxn1_stp2_unreacted.data_template diff --git a/examples/USER/misc/bond_react/tiny_nylon/tiny_nylon.data b/examples/USER/react/tiny_nylon/tiny_nylon.data similarity index 100% rename from examples/USER/misc/bond_react/tiny_nylon/tiny_nylon.data rename to examples/USER/react/tiny_nylon/tiny_nylon.data diff --git a/examples/USER/misc/bond_react/tiny_polystyrene/2styrene_map b/examples/USER/react/tiny_polystyrene/2styrene_map similarity index 100% rename from examples/USER/misc/bond_react/tiny_polystyrene/2styrene_map rename to examples/USER/react/tiny_polystyrene/2styrene_map diff --git a/examples/USER/misc/bond_react/tiny_polystyrene/2styrene_reacted.data_template b/examples/USER/react/tiny_polystyrene/2styrene_reacted.data_template similarity index 100% rename from examples/USER/misc/bond_react/tiny_polystyrene/2styrene_reacted.data_template rename to examples/USER/react/tiny_polystyrene/2styrene_reacted.data_template diff --git a/examples/USER/misc/bond_react/tiny_polystyrene/2styrene_unreacted.data_template b/examples/USER/react/tiny_polystyrene/2styrene_unreacted.data_template similarity index 100% rename from examples/USER/misc/bond_react/tiny_polystyrene/2styrene_unreacted.data_template rename to examples/USER/react/tiny_polystyrene/2styrene_unreacted.data_template diff --git a/examples/USER/misc/bond_react/tiny_polystyrene/chain_chain_map b/examples/USER/react/tiny_polystyrene/chain_chain_map similarity index 100% rename from examples/USER/misc/bond_react/tiny_polystyrene/chain_chain_map rename to examples/USER/react/tiny_polystyrene/chain_chain_map diff --git a/examples/USER/misc/bond_react/tiny_polystyrene/chain_chain_reacted.data_template b/examples/USER/react/tiny_polystyrene/chain_chain_reacted.data_template similarity index 100% rename from examples/USER/misc/bond_react/tiny_polystyrene/chain_chain_reacted.data_template rename to examples/USER/react/tiny_polystyrene/chain_chain_reacted.data_template diff --git a/examples/USER/misc/bond_react/tiny_polystyrene/chain_chain_unreacted.data_template b/examples/USER/react/tiny_polystyrene/chain_chain_unreacted.data_template similarity index 100% rename from examples/USER/misc/bond_react/tiny_polystyrene/chain_chain_unreacted.data_template rename to examples/USER/react/tiny_polystyrene/chain_chain_unreacted.data_template diff --git a/examples/USER/misc/bond_react/tiny_polystyrene/chain_plus_styrene_map b/examples/USER/react/tiny_polystyrene/chain_plus_styrene_map similarity index 100% rename from examples/USER/misc/bond_react/tiny_polystyrene/chain_plus_styrene_map rename to examples/USER/react/tiny_polystyrene/chain_plus_styrene_map diff --git a/examples/USER/misc/bond_react/tiny_polystyrene/chain_plus_styrene_reacted.data_template b/examples/USER/react/tiny_polystyrene/chain_plus_styrene_reacted.data_template similarity index 100% rename from examples/USER/misc/bond_react/tiny_polystyrene/chain_plus_styrene_reacted.data_template rename to examples/USER/react/tiny_polystyrene/chain_plus_styrene_reacted.data_template diff --git a/examples/USER/misc/bond_react/tiny_polystyrene/chain_plus_styrene_unreacted.data_template b/examples/USER/react/tiny_polystyrene/chain_plus_styrene_unreacted.data_template similarity index 100% rename from examples/USER/misc/bond_react/tiny_polystyrene/chain_plus_styrene_unreacted.data_template rename to examples/USER/react/tiny_polystyrene/chain_plus_styrene_unreacted.data_template diff --git a/examples/USER/misc/bond_react/tiny_polystyrene/in.tiny_polystyrene.stabilized b/examples/USER/react/tiny_polystyrene/in.tiny_polystyrene.stabilized similarity index 100% rename from examples/USER/misc/bond_react/tiny_polystyrene/in.tiny_polystyrene.stabilized rename to examples/USER/react/tiny_polystyrene/in.tiny_polystyrene.stabilized diff --git a/examples/USER/misc/bond_react/tiny_polystyrene/log.20Nov19.tiny_polystyrene.stabilized.g++.1 b/examples/USER/react/tiny_polystyrene/log.20Nov19.tiny_polystyrene.stabilized.g++.1 similarity index 100% rename from examples/USER/misc/bond_react/tiny_polystyrene/log.20Nov19.tiny_polystyrene.stabilized.g++.1 rename to examples/USER/react/tiny_polystyrene/log.20Nov19.tiny_polystyrene.stabilized.g++.1 diff --git a/examples/USER/misc/bond_react/tiny_polystyrene/log.20Nov19.tiny_polystyrene.stabilized.g++.4 b/examples/USER/react/tiny_polystyrene/log.20Nov19.tiny_polystyrene.stabilized.g++.4 similarity index 100% rename from examples/USER/misc/bond_react/tiny_polystyrene/log.20Nov19.tiny_polystyrene.stabilized.g++.4 rename to examples/USER/react/tiny_polystyrene/log.20Nov19.tiny_polystyrene.stabilized.g++.4 diff --git a/examples/USER/misc/bond_react/tiny_polystyrene/tiny_polystyrene.data b/examples/USER/react/tiny_polystyrene/tiny_polystyrene.data similarity index 100% rename from examples/USER/misc/bond_react/tiny_polystyrene/tiny_polystyrene.data rename to examples/USER/react/tiny_polystyrene/tiny_polystyrene.data