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Added duplication of stdout into logfile

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This commit is contained in:
Oliver Henrich
2022-01-07 13:45:54 +00:00
parent 11d66f8f1d
commit 1f81e2afad
1 changed files with 53 additions and 52 deletions
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105
examples/PACKAGES/cgdna/examples/test.sh
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@ -1,6 +1,6 @@
#! /bin/bash
DATE='27Oct21'
DATE='14Dec21'
TOL=1e-8
LMPDIR=/Users/ohenrich/Work/code/lammps
@ -8,17 +8,17 @@ SRCDIR=$LMPDIR/src
EXDIR=$LMPDIR/examples/PACKAGES/cgdna/examples
if [ $# -eq 1 ] && [ $1 = run ]; then
echo '# Compiling executable in' $SRCDIR
echo '# Compiling executable in' $SRCDIR | tee -a $EXDIR/test.log
cd $SRCDIR
make clean-all
make purge
make pu
make ps
make -j8 mpi
make clean-all | tee -a $EXDIR/test.log
make purge | tee -a $EXDIR/test.log
make pu | tee -a $EXDIR/test.log
make ps | tee -a $EXDIR/test.log
make -j8 mpi | tee -a $EXDIR/test.log
######################################################
echo '# Running oxDNA duplex1 test'
echo '# Running oxDNA duplex1 test' | tee -a $EXDIR/test.log
cd $EXDIR/oxDNA/duplex1
mkdir test
cd test
@ -33,9 +33,9 @@ if [ $# -eq 1 ] && [ $1 = run ]; then
ndiff -relerr $TOL e_test.1.dat e_old.1.dat
if [ $? -eq 0 ];
then
echo "# 1 MPI-task passed"
echo "# 1 MPI-task passed" | tee -a $EXDIR/test.log
else
echo "# 1 MPI-task unsuccessful"
echo "# 1 MPI-task unsuccessful" | tee -a $EXDIR/test.log
fi
mpirun -np 4 ./lmp_mpi < in.duplex1 > /dev/null
@ -45,15 +45,15 @@ if [ $# -eq 1 ] && [ $1 = run ]; then
ndiff -relerr $TOL e_test.4.dat e_old.4.dat
if [ $? -eq 0 ];
then
echo "# 4 MPI-tasks passed"
echo "# 4 MPI-tasks passed" | tee -a $EXDIR/test.log
else
echo "# 4 MPI-tasks unsuccessful"
echo "# 4 MPI-tasks unsuccessful" | tee -a $EXDIR/test.log
fi
######################################################
######################################################
echo '# Running oxDNA duplex2 test'
echo '# Running oxDNA duplex2 test' | tee -a $EXDIR/test.log
cd $EXDIR/oxDNA/duplex2
mkdir test
cd test
@ -68,9 +68,9 @@ if [ $# -eq 1 ] && [ $1 = run ]; then
ndiff -relerr $TOL e_test.1.dat e_old.1.dat
if [ $? -eq 0 ];
then
echo "# 1 MPI-task passed"
echo "# 1 MPI-task passed" | tee -a $EXDIR/test.log
else
echo "# 1 MPI-task unsuccessful"
echo "# 1 MPI-task unsuccessful" | tee -a $EXDIR/test.log
fi
mpirun -np 4 ./lmp_mpi < in.duplex2 > /dev/null
@ -80,15 +80,15 @@ if [ $# -eq 1 ] && [ $1 = run ]; then
ndiff -relerr $TOL e_test.4.dat e_old.4.dat
if [ $? -eq 0 ];
then
echo "# 4 MPI-tasks passed"
echo "# 4 MPI-tasks passed" | tee -a $EXDIR/test.log
else
echo "# 4 MPI-tasks unsuccessful"
echo "# 4 MPI-tasks unsuccessful" | tee -a $EXDIR/test.log
fi
######################################################
######################################################
echo '# Running oxDNA2 duplex1 test'
echo '# Running oxDNA2 duplex1 test' | tee -a $EXDIR/test.log
cd $EXDIR/oxDNA2/duplex1
mkdir test
cd test
@ -103,9 +103,9 @@ if [ $# -eq 1 ] && [ $1 = run ]; then
ndiff -relerr $TOL e_test.1.dat e_old.1.dat
if [ $? -eq 0 ];
then
echo "# 1 MPI-task passed"
echo "# 1 MPI-task passed" | tee -a $EXDIR/test.log
else
echo "# 1 MPI-task unsuccessful"
echo "# 1 MPI-task unsuccessful" | tee -a $EXDIR/test.log
fi
mpirun -np 4 ./lmp_mpi < in.duplex1 > /dev/null
@ -115,15 +115,15 @@ if [ $# -eq 1 ] && [ $1 = run ]; then
ndiff -relerr $TOL e_test.4.dat e_old.4.dat
if [ $? -eq 0 ];
then
echo "# 4 MPI-tasks passed"
echo "# 4 MPI-tasks passed" | tee -a $EXDIR/test.log
else
echo "# 4 MPI-tasks unsuccessful"
echo "# 4 MPI-tasks unsuccessful" | tee -a $EXDIR/test.log
fi
######################################################
######################################################
echo '# Running oxDNA2 duplex2 test'
echo '# Running oxDNA2 duplex2 test' | tee -a $EXDIR/test.log
cd $EXDIR/oxDNA2/duplex2
mkdir test
cd test
@ -138,9 +138,9 @@ if [ $# -eq 1 ] && [ $1 = run ]; then
ndiff -relerr $TOL e_test.1.dat e_old.1.dat
if [ $? -eq 0 ];
then
echo "# 1 MPI-task passed"
echo "# 1 MPI-task passed" | tee -a $EXDIR/test.log
else
echo "# 1 MPI-task unsuccessful"
echo "# 1 MPI-task unsuccessful" | tee -a $EXDIR/test.log
fi
mpirun -np 4 ./lmp_mpi < in.duplex2 > /dev/null
@ -150,15 +150,15 @@ if [ $# -eq 1 ] && [ $1 = run ]; then
ndiff -relerr $TOL e_test.4.dat e_old.4.dat
if [ $? -eq 0 ];
then
echo "# 4 MPI-tasks passed"
echo "# 4 MPI-tasks passed" | tee -a $EXDIR/test.log
else
echo "# 4 MPI-tasks unsuccessful"
echo "# 4 MPI-tasks unsuccessful" | tee -a $EXDIR/test.log
fi
######################################################
######################################################
echo '# Running oxDNA2 duplex3 test'
echo '# Running oxDNA2 duplex3 test' | tee -a $EXDIR/test.log
cd $EXDIR/oxDNA2/duplex3
mkdir test
cd test
@ -173,9 +173,9 @@ if [ $# -eq 1 ] && [ $1 = run ]; then
ndiff -relerr $TOL e_test.1.dat e_old.1.dat
if [ $? -eq 0 ];
then
echo "# 1 MPI-task passed"
echo "# 1 MPI-task passed" | tee -a $EXDIR/test.log
else
echo "# 1 MPI-task unsuccessful"
echo "# 1 MPI-task unsuccessful" | tee -a $EXDIR/test.log
fi
mpirun -np 4 ./lmp_mpi < in.duplex3 > /dev/null
@ -185,15 +185,15 @@ if [ $# -eq 1 ] && [ $1 = run ]; then
ndiff -relerr $TOL e_test.4.dat e_old.4.dat
if [ $? -eq 0 ];
then
echo "# 4 MPI-tasks passed"
echo "# 4 MPI-tasks passed" | tee -a $EXDIR/test.log
else
echo "# 4 MPI-tasks unsuccessful"
echo "# 4 MPI-tasks unsuccessful" | tee -a $EXDIR/test.log
fi
######################################################
######################################################
echo '# Running oxDNA2 unique_bp test'
echo '# Running oxDNA2 unique_bp test' | tee -a $EXDIR/test.log
cd $EXDIR/oxDNA2/unique_bp
mkdir test
cd test
@ -210,9 +210,9 @@ if [ $# -eq 1 ] && [ $1 = run ]; then
ndiff -relerr $TOL e_test.4type.1.dat e_old.4type.1.dat
if [ $? -eq 0 ];
then
echo "# 1 MPI-task 4 types passed"
echo "# 1 MPI-task 4 types passed" | tee -a $EXDIR/test.log
else
echo "# 1 MPI-task 4 types unsuccessful"
echo "# 1 MPI-task 4 types unsuccessful" | tee -a $EXDIR/test.log
fi
mpirun -np 4 ./lmp_mpi < in.duplex4.4type > /dev/null
@ -222,9 +222,9 @@ if [ $# -eq 1 ] && [ $1 = run ]; then
ndiff -relerr $TOL e_test.4type.4.dat e_old.4type.4.dat
if [ $? -eq 0 ];
then
echo "# 4 MPI-tasks 4 types passed"
echo "# 4 MPI-tasks 4 types passed" | tee -a $EXDIR/test.log
else
echo "# 4 MPI-tasks 4 types unsuccessful"
echo "# 4 MPI-tasks 4 types unsuccessful" | tee -a $EXDIR/test.log
fi
mpirun -np 1 ./lmp_mpi < in.duplex4.8type > /dev/null
@ -234,9 +234,9 @@ if [ $# -eq 1 ] && [ $1 = run ]; then
ndiff -relerr $TOL e_test.8type.1.dat e_old.8type.1.dat
if [ $? -eq 0 ];
then
echo "# 1 MPI-task 8 types passed"
echo "# 1 MPI-task 8 types passed" | tee -a $EXDIR/test.log
else
echo "# 1 MPI-task 8 types unsuccessful"
echo "# 1 MPI-task 8 types unsuccessful" | tee -a $EXDIR/test.log
fi
mpirun -np 4 ./lmp_mpi < in.duplex4.8type > /dev/null
@ -246,15 +246,15 @@ if [ $# -eq 1 ] && [ $1 = run ]; then
ndiff -relerr $TOL e_test.8type.4.dat e_old.8type.4.dat
if [ $? -eq 0 ];
then
echo "# 4 MPI-tasks 8 types passed"
echo "# 4 MPI-tasks 8 types passed" | tee -a $EXDIR/test.log
else
echo "# 4 MPI-tasks 8 types unsuccessful"
echo "# 4 MPI-tasks 8 types unsuccessful" | tee -a $EXDIR/test.log
fi
######################################################
######################################################
echo '# Running oxDNA2 dsring test'
echo '# Running oxDNA2 dsring test' | tee -a $EXDIR/test.log
cd $EXDIR/oxDNA2/dsring
mkdir test
cd test
@ -269,9 +269,9 @@ if [ $# -eq 1 ] && [ $1 = run ]; then
ndiff -relerr $TOL e_test.1.dat e_old.1.dat
if [ $? -eq 0 ];
then
echo "# 1 MPI-task passed"
echo "# 1 MPI-task passed" | tee -a $EXDIR/test.log
else
echo "# 1 MPI-task unsuccessful"
echo "# 1 MPI-task unsuccessful" | tee -a $EXDIR/test.log
fi
mpirun -np 4 ./lmp_mpi < in.dsring > /dev/null
@ -281,15 +281,15 @@ if [ $# -eq 1 ] && [ $1 = run ]; then
ndiff -relerr $TOL e_test.4.dat e_old.4.dat
if [ $? -eq 0 ];
then
echo "# 4 MPI-tasks passed"
echo "# 4 MPI-tasks passed" | tee -a $EXDIR/test.log
else
echo "# 4 MPI-tasks unsuccessful"
echo "# 4 MPI-tasks unsuccessful" | tee -a $EXDIR/test.log
fi
######################################################
######################################################
echo '# Running oxRNA2 duplex2 test'
echo '# Running oxRNA2 duplex2 test' | tee -a $EXDIR/test.log
cd $EXDIR/oxRNA2/duplex2
mkdir test
cd test
@ -304,9 +304,9 @@ if [ $# -eq 1 ] && [ $1 = run ]; then
ndiff -relerr $TOL e_test.1.dat e_old.1.dat
if [ $? -eq 0 ];
then
echo "# 1 MPI-task passed"
echo "# 1 MPI-task passed" | tee -a $EXDIR/test.log
else
echo "# 1 MPI-task unsuccessful"
echo "# 1 MPI-task unsuccessful" | tee -a $EXDIR/test.log
fi
mpirun -np 4 ./lmp_mpi < in.duplex2 > /dev/null
@ -316,13 +316,13 @@ if [ $# -eq 1 ] && [ $1 = run ]; then
ndiff -relerr $TOL e_test.4.dat e_old.4.dat
if [ $? -eq 0 ];
then
echo "# 4 MPI-tasks passed"
echo "# 4 MPI-tasks passed" | tee -a $EXDIR/test.log
else
echo "# 4 MPI-tasks unsuccessful"
echo "# 4 MPI-tasks unsuccessful" | tee -a $EXDIR/test.log
fi
######################################################
echo '# Done'
echo '# Done' | tee -a $EXDIR/test.log
elif [ $# -eq 1 ] && [ $1 = clean ]; then
echo '# Deleting test directories'
@ -334,6 +334,7 @@ elif [ $# -eq 1 ] && [ $1 = clean ]; then
rm -rf $EXDIR/oxDNA2/unique_bp/test
rm -rf $EXDIR/oxDNA2/dsring/test
rm -rf $EXDIR/oxRNA2/duplex2/test
rm -rf $EXDIR/test.log
echo '# Done'
else