diff --git a/doc/Eqs/angle_cosine_periodic.jpg b/doc/Eqs/angle_cosine_periodic.jpg new file mode 100644 index 0000000000..32bbaf88b3 Binary files /dev/null and b/doc/Eqs/angle_cosine_periodic.jpg differ diff --git a/doc/Eqs/angle_cosine_periodic.tex b/doc/Eqs/angle_cosine_periodic.tex new file mode 100644 index 0000000000..69aa1bba6a --- /dev/null +++ b/doc/Eqs/angle_cosine_periodic.tex @@ -0,0 +1,9 @@ +\documentstyle[12pt]{article} + +\begin{document} + +$$ +E=C\left[ 1-B(-1)^ncos\left( n\theta\right) \right] +$$ + +\end{document} diff --git a/doc/Eqs/dreiding_hbond.jpg b/doc/Eqs/dreiding_hbond.jpg new file mode 100644 index 0000000000..76cc42a45b Binary files /dev/null and b/doc/Eqs/dreiding_hbond.jpg differ diff --git a/doc/Eqs/improper_umbrella.jpg b/doc/Eqs/improper_umbrella.jpg new file mode 100644 index 0000000000..efef6c06be Binary files /dev/null and b/doc/Eqs/improper_umbrella.jpg differ diff --git a/doc/Eqs/improper_umbrella.tex b/doc/Eqs/improper_umbrella.tex new file mode 100644 index 0000000000..755a6af07b --- /dev/null +++ b/doc/Eqs/improper_umbrella.tex @@ -0,0 +1,13 @@ +\documentstyle[12pt]{article} + +\begin{document} + +$$ +E=\frac{1}{2}K\left( \frac{1+cos\omega_0}{sin\omega_0}\right) ^2 \left( cos\omega - cos\omega_0\right) \qquad \omega_0 \neq 0^o +$$ + +$$ +E=K\left( 1-cos\omega\right) \qquad \omega_0 = 0^o +$$ + +\end{document} diff --git a/doc/Eqs/pair_hbond_dreiding.jpg b/doc/Eqs/pair_hbond_dreiding.jpg new file mode 100644 index 0000000000..a8f0a30c0e Binary files /dev/null and b/doc/Eqs/pair_hbond_dreiding.jpg differ diff --git a/doc/Eqs/pair_hbond_dreiding.tex b/doc/Eqs/pair_hbond_dreiding.tex new file mode 100644 index 0000000000..9a479dc157 --- /dev/null +++ b/doc/Eqs/pair_hbond_dreiding.tex @@ -0,0 +1,16 @@ +\documentstyle[12pt]{article} + +\begin{document} + +$$ +E^{hb}_{LJ}(r)=AR^{-12}-BR^{-10}cos^n\theta=4\epsilon\left\lbrace 5\left[ \frac{\sigma}{r}\right]^{12}-6\left[ \frac{\sigma}{r}\right]^{10} \right\rbrace cos^n\theta +$$ + +$$ +E^{hb}_{MORSE}(r)=D_0\left\lbrace \chi^2 - 2\chi\right\rbrace cos^n\theta=D_{0}\left\lbrace e^{- 2 \alpha (r - r_0)} - 2 e^{- \alpha (r - r_0)} \right\rbrace cos^n\theta +$$ + +$$ +where \qquad r < r_c, \qquad cos^2\left( \theta\right) > cos^2\left( \theta_c\right) +$$ +\end{document} diff --git a/doc/Eqs/umbrella.jpg b/doc/Eqs/umbrella.jpg new file mode 100644 index 0000000000..5783b54ea3 Binary files /dev/null and b/doc/Eqs/umbrella.jpg differ