From 214e8876c01f7f413c8075d10a626c8e0eb61e9b Mon Sep 17 00:00:00 2001 From: sjplimp Date: Tue, 7 Jun 2016 17:56:27 +0000 Subject: [PATCH] git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@15141 f3b2605a-c512-4ea7-a41b-209d697bcdaa --- doc/html/_sources/fix_ehex.txt | 4 ++-- doc/html/fix_ehex.html | 4 ++-- doc/src/fix.txt | 1 + doc/src/fix_ehex.txt | 4 ++-- 4 files changed, 7 insertions(+), 6 deletions(-) diff --git a/doc/html/_sources/fix_ehex.txt b/doc/html/_sources/fix_ehex.txt index b2278c9c80..86c2d8d0b4 100644 --- a/doc/html/_sources/fix_ehex.txt +++ b/doc/html/_sources/fix_ehex.txt @@ -79,12 +79,12 @@ additional thermostatting force to the equations of motion, such that the time evolution of coordinates and momenta of particle :math:`i` becomes :ref:`(Wirnsberger) ` -.. image:: src/Eqs/fix_ehex_eom.jpg +.. image:: Eqs/fix_ehex_eom.jpg :align: center The thermostatting force is given by -.. image:: src/Eqs/fix_ehex_f.jpg +.. image:: Eqs/fix_ehex_f.jpg :align: center where :math:`m_i` is the mass and :math:`k(\mathbf r_i)` maps the particle diff --git a/doc/html/fix_ehex.html b/doc/html/fix_ehex.html index faf0800a71..3496d4cdfa 100644 --- a/doc/html/fix_ehex.html +++ b/doc/html/fix_ehex.html @@ -194,9 +194,9 @@ corresponds to :math:`k\). The energy swap is modelled by introducing an additional thermostatting force to the equations of motion, such that the time evolution of coordinates and momenta of particle \(i\) becomes (Wirnsberger)

-src/Eqs/fix_ehex_eom.jpg +_images/fix_ehex_eom.jpg

The thermostatting force is given by

-src/Eqs/fix_ehex_f.jpg +_images/fix_ehex_f.jpg

where \(m_i\) is the mass and \(k(\mathbf r_i)\) maps the particle position to the respective reservoir. The quantity \(F_*\Gamma_*k(\mathbf r_i)**\) corresponds to the input parameter diff --git a/doc/src/fix.txt b/doc/src/fix.txt index 577d2b1f2e..bf9c1d5bec 100644 --- a/doc/src/fix.txt +++ b/doc/src/fix.txt @@ -181,6 +181,7 @@ of "this page"_Section_commands.html#cmd_5. "drag"_fix_drag.html - drag atoms towards a defined coordinate "dt/reset"_fix_dt_reset.html - reset the timestep based on velocity, forces "efield"_fix_efield.html - impose electric field on system +"ehex"_fix_ehex.html - ehanced heat exchange algorithm "enforce2d"_fix_enforce2d.html - zero out z-dimension velocity and force "evaporate"_fix_evaporate.html - remove atoms from simulation periodically "external"_fix_external.html - callback to an external driver program diff --git a/doc/src/fix_ehex.txt b/doc/src/fix_ehex.txt index a197efeb31..c55e6722ee 100644 --- a/doc/src/fix_ehex.txt +++ b/doc/src/fix_ehex.txt @@ -69,11 +69,11 @@ additional thermostatting force to the equations of motion, such that the time evolution of coordinates and momenta of particle \(i\) becomes "(Wirnsberger)"_#Wirnsberger -:c,image(src/Eqs/fix_ehex_eom.jpg) +:c,image(Eqs/fix_ehex_eom.jpg) The thermostatting force is given by -:c,image(src/Eqs/fix_ehex_f.jpg) +:c,image(Eqs/fix_ehex_f.jpg) where \(m_i\) is the mass and \(k(\mathbf r_i)\) maps the particle position to the respective reservoir. The quantity