Added DATE reporting for parameter file

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@13534 f3b2605a-c512-4ea7-a41b-209d697bcdaa
This commit is contained in:
athomps
2015-07-06 17:08:35 +00:00
parent e60ccb6f9a
commit 217fdbc360
5 changed files with 12 additions and 84 deletions

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@ -279,7 +279,16 @@ void PairReaxC::coeff( int nargs, char **args )
// read ffield file
Read_Force_Field(args[2], &(system->reax_param), control);
char *file = args[2];
FILE *fp;
fp = force->open_potential(file);
if (fp != NULL)
Read_Force_Field(fp, &(system->reax_param), control);
else if (comm->me == 0) {
char str[128];
sprintf(str,"Cannot open ReaxFF potential file %s",file);
error->one(FLERR,str);
}
// read args that map atom types to elements in potential file
// map[i] = which element the Ith atom type is, -1 if NULL

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@ -29,10 +29,9 @@
#include "reaxc_ffield.h"
#include "reaxc_tool_box.h"
char Read_Force_Field( char *ffield_file, reax_interaction *reax,
char Read_Force_Field( FILE *fp, reax_interaction *reax,
control_params *control )
{
FILE *fp;
char *s;
char **tmp;
char ****tor_flag;
@ -44,18 +43,11 @@ char Read_Force_Field( char *ffield_file, reax_interaction *reax,
comm = MPI_COMM_WORLD;
/* open force field file */
if ( (fp = lmp_open_potential( ffield_file ) ) == NULL ) {
fprintf( stderr, "error opening the force field file! terminating...\n" );
MPI_Abort( comm, FILE_NOT_FOUND );
}
s = (char*) malloc(sizeof(char)*MAX_LINE);
tmp = (char**) malloc(sizeof(char*)*MAX_TOKENS);
for (i=0; i < MAX_TOKENS; i++)
tmp[i] = (char*) malloc(sizeof(char)*MAX_TOKEN_LEN);
/* reading first header comment */
fgets( s, MAX_LINE, fp );

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@ -29,6 +29,6 @@
#include "reaxc_types.h"
char Read_Force_Field( char*, reax_interaction*, control_params* );
char Read_Force_Field( FILE*, reax_interaction*, control_params* );
#endif

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@ -239,75 +239,3 @@ void sfree( void *ptr, const char *name )
ptr = NULL;
}
/* ----------------------------------------------------------------------
strip off leading part of path, return just the filename
------------------------------------------------------------------------- */
static const char *potname(const char *path)
{
const char *pot;
if (path == NULL) return NULL;
#if defined(_WIN32)
// skip over the disk drive part of windows pathnames
if (isalpha(path[0]) && path[1] == ':')
path += 2;
#endif
for (pot = path; *path != '\0'; ++path) {
#if defined(_WIN32)
if ((*path == '\\') || (*path == '/')) pot = path + 1;
#else
if (*path == '/') pot = path + 1;
#endif
}
return pot;
}
/* ----------------------------------------------------------------------
open a potential file as specified by name; failing that,
search in dir specified by env variable LAMMPS_POTENTIALS
------------------------------------------------------------------------- */
FILE *lmp_open_potential(const char *name)
{
FILE *fp;
if (name == NULL) return NULL;
// attempt to open file directly
// if successful, return ptr
fp = fopen(name,"r");
if (fp) return fp;
// try the environment variable directory
const char *path = getenv("LAMMPS_POTENTIALS");
if (path == NULL) return NULL;
const char *pot = potname(name);
if (pot == NULL) return NULL;
size_t len1 = strlen(path);
size_t len2 = strlen(pot);
char *newpath = new char[len1+len2+2];
strcpy(newpath,path);
#if defined(_WIN32)
newpath[len1] = '\\';
newpath[len1+1] = 0;
#else
newpath[len1] = '/';
newpath[len1+1] = 0;
#endif
strcat(newpath,pot);
fp = fopen(newpath,"r");
delete[] newpath;
return fp;
}

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@ -64,5 +64,4 @@ int Tokenize( char*, char*** );
void *smalloc( long, const char*, MPI_Comm );
void *scalloc( int, int, const char*, MPI_Comm );
void sfree( void*, const char* );
FILE *lmp_open_potential(const char *);
#endif