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git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@2938 f3b2605a-c512-4ea7-a41b-209d697bcdaa

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2009-07-01 20:28:51 +00:00
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@ -556,13 +556,34 @@ command.
<DD>The create_box command cannot be used after a read_data, read_restart,
or create_box command.
<DT><I>Cannot delete group all</I>
<DD>Self-explanatory.
<DT><I>Cannot delete group currently used by a compute</I>
<DD>Self-explanatory.
<DT><I>Cannot delete group currently used by a dump</I>
<DD>Self-explanatory.
<DT><I>Cannot delete group currently used by a fix</I>
<DD>Self-explanatory.
<DT><I>Cannot delete group currently used by atom_modify first</I>
<DD>Self-explanatory.
<DT><I>Cannot displace_box on a non-periodic boundary</I>
<DD>Self-explanatory.
<DT><I>Cannot dump scaled coords with triclinic box</I>
<DT><I>Cannot evaporate atoms in atom_modify first group</I>
<DD>Use dump custom with x,y,z instead.
<DD>This is a restriction due to the way atoms are organized in
a list to enable the atom_modify first command.
<DT><I>Cannot find delete_bonds group ID</I>
@ -651,11 +672,21 @@ correct.
<DD>The output file for the fix rdf command cannot be opened. Check that
the path and name are correct.
<DT><I>Cannot open fix reax/bonds file %s</I>
<DD>The output file for the fix reax/bonds command cannot be opened.
Check that the path and name are correct.
<DT><I>Cannot open fix tmd file %s</I>
<DD>The output file for the fix tmd command cannot be opened. Check that
the path and name are correct.
<DT><I>Cannot open fix ttm file %s</I>
<DD>The output file for the fix ttm command cannot be opened. Check that
the path and name are correct.
<DT><I>Cannot open gzipped file</I>
<DD>LAMMPS is attempting to open a gzipped version of the specified file
@ -834,6 +865,10 @@ an atom map to be created.
<DD>Self-explanatory.
<DT><I>Cannot use fix box/relax on a non-periodic dimension</I>
<DD>Only periodic dimensions can be controlled with this fix.
<DT><I>Cannot use fix deform trate on a box with zero tilt</I>
<DD>The trate style alters the current strain.
@ -850,10 +885,6 @@ an atom map to be created.
<DD>This feature is not yet supported.
<DT><I>Cannot use fix nph without per-type mass defined</I>
<DD>The defined atom style uses per-atom mass, not per-type mass.
<DT><I>Cannot use fix npt and fix deform on same dimension</I>
<DD>These commands both change the box size/shape, so you cannot use both
@ -867,14 +898,6 @@ together.
<DD>This feature is not yet supported.
<DT><I>Cannot use fix npt without per-type mass defined</I>
<DD>The defined atom style uses per-atom mass, not per-type mass.
<DT><I>Cannot use fix nvt without per-type mass defined</I>
<DD>The defined atom style uses per-atom mass, not per-type mass.
<DT><I>Cannot use fix pour with triclinic box</I>
<DD>This feature is not yet supported.
@ -891,22 +914,21 @@ together.
<DD>Self-explanatory.
<DT><I>Cannot use fix press/berendsen without per-type mass defined</I>
<DT><I>Cannot use fix reax/bonds without pair_style reax</I>
<DD>Self-explanatory.
<DT><I>Cannot use fix rigid without per-type mass defined</I>
<DD>This is a current restriction on the kinds of atoms fix rigid can
be used with.
<DD>Self-explantory.
<DT><I>Cannot use fix shake with non-molecular system</I>
<DD>Your choice of atom style does not have bonds.
<DT><I>Cannot use fix temp/berendsen without per-type mass defined</I>
<DT><I>Cannot use fix ttm with 2d simulation</I>
<DD>Self-explanatory.
<DD>This is a current restriction of this fix due to the grid it creates.
<DT><I>Cannot use fix ttm with triclinic box</I>
<DD>This is a current restriction of this fix due to the grid it creates.
<DT><I>Cannot use kspace solver on system with no charge</I>
@ -918,6 +940,10 @@ be used with.
the simulation box is very small in some dimension, compared to the
neighbor cutoff. Use the "nsq" style instead of "bin" style.
<DT><I>Cannot use nonperiodic boundares with fix ttm</I>
<DD>This fix requires a fully periodic simulation box.
<DT><I>Cannot use nonperiodic boundaries with Ewald</I>
<DD>For kspace style ewald, all 3 dimensions must have periodic boundaries
@ -974,6 +1000,16 @@ triclinic.
<DD>Self-explanatory.
<DT><I>Compute erotate/asphere requires extended particles</I>
<DD>This quantity can only be calculated for particles with a shape
setting.
<DT><I>Compute temp/asphere requires extended particles</I>
<DD>This quantity can only be calculated for particles with a shape
setting.
<DT><I>Compute ID for compute reduce does not exist</I>
<DD>Self-explanatory.
@ -999,35 +1035,44 @@ triclinic.
<DD>This is because the computation of the centro-symmetry values
uses a pairwise neighbor list.
<DT><I>Compute cna/atom cutoff is longer than pairwise cutoff</I>
<DD>Self-explantory.
<DT><I>Compute cna/atom requires a pair style be defined</I>
<DD>Self-explantory.
<DT><I>Compute coord/atom cutoff is longer than pairwise cutoff</I>
<DD>Cannot compute coordination at distances longer than the pair cutoff,
since those atoms are not in the neighbor list.
<DT><I>Compute coord/atom requires a pair style be defined</I>
<DD>Self-explantory.
<DT><I>Compute damage/atom requires peridynamic potential</I>
<DD>Damage is a Peridynamic-specific metric. It requires you
to be running a Peridynamics simulation.
<DT><I>Compute erotate/asphere requires atom attribute shape</I>
<DT><I>Compute erotate/asphere cannot be used with atom attributes diameter or rmass</I>
<DD>An atom style that specifies atom shape is needed.
<DD>These attributes override the shape and mass settings, so cannot be
used.
<DT><I>Compute erotate/asphere requires atom attributes angmom, quat</I>
<DT><I>Compute erotate/asphere requires atom attributes angmom, quat, shape</I>
<DD>An atom style is needed that has these attributes.
<DD>An atom style that defines these attributes must be used.
<DT><I>Compute erotate/sphere requires atom attribute omega</I>
<DD>An atom style is needed that has this attribute.
<DD>An atom style that defines this attribute must be used.
<DT><I>Compute erotate/sphere requires atom attribute shape</I>
<DT><I>Compute erotate/sphere requires atom attribute radius or shape</I>
<DD>An atom style that specifies atom shape is needed.
<DT><I>Compute erotate/sphere requires atom attributes radius, rmass</I>
<DD>An atom style is needed that has these attributes.
<DD>An atom style that defines these attributes must be used.
<DT><I>Compute erotate/sphere requires spherical particle shapes</I>
@ -1037,11 +1082,6 @@ to be running a Peridynamics simulation.
<DD>Self-explanatory.
<DT><I>Compute group/group requires a pair style be defined</I>
<DD>This is because the computation of the group-group interactions uses a
pairwise neighbor list.
<DT><I>Compute pe must use group all</I>
<DD>Energies computed by potentials (pair, bond, etc) are computed on all
@ -1081,17 +1121,42 @@ temperature.
<DD>Self-explanatory.
<DT><I>Compute reduce region ID does not exist</I>
<DD>Self-explanatory.
<DT><I>Compute reduce variable is not atom-style variable</I>
<DD>Self-explanatory.
<DT><I>Compute temp/asphere requires atom attributes quat, angmom</I>
<DT><I>Compute temp/asphere cannot be used with atom attributes diameter or rmass</I>
<DD>The atom style defined does not have these attributes.
<DD>These attributes override the shape and mass settings, so cannot be
used.
<DT><I>Compute temp/asphere requires atom attributes angmom, quat, shape</I>
<DD>An atom style that defines these attributes must be used.
<DT><I>Compute temp/partial cannot use vz for 2d systems</I>
<DD>Self-explanatory.
<DT><I>Compute temp/profile cannot use vz for 2d systems</I>
<DD>Self-explanatory.
<DT><I>Compute temp/profile cannot bin z for 2d systems</I>
<DD>Self-explanatory.
<DT><I>Compute temp/sphere requires atom attribute omega</I>
<DD>An atom style is needed that has this attributes.
<DD>An atom style that defines this attribute must be used.
<DT><I>Compute temp/sphere requires atom attribute radius or shape</I>
<DD>An atom style that defines these attributes must be used.
<DT><I>Compute temp/sphere requires spherical particle shapes</I>
@ -1165,6 +1230,10 @@ temperature is 0.0.
<DD>Self-explanatory.
<DT><I>Could not find group delete ID</I>
<DD>Self-explanatory.
<DT><I>Could not find delete_atoms group ID</I>
<DD>Group ID used in the delete_atoms command does not exist.
@ -1175,11 +1244,11 @@ temperature is 0.0.
<DT><I>Could not find displace_atoms group ID</I>
<DD>A group ID used in the displace_atoms command does not exist.
<DD>Group ID used in the displace_atoms command does not exist.
<DT><I>Could not find displace_box group ID</I>
<DD>Self-explanatory.
<DD>Group ID used in the displace_box command does not exist.
<DT><I>Could not find dump custom compute ID</I>
@ -1218,15 +1287,11 @@ does not exist.
<DD>A group ID used in the fix rigid command does not exist.
<DT><I>Could not find fix spring couple group ID</I>
<DD>Self-explanatory.
<DT><I>Could not find fix_modify ID</I>
<DD>A fix ID used in the fix_modify command does not exist.
<DT><I>Could not find fix_modify press ID</I>
<DT><I>Could not find fix_modify pressure ID</I>
<DD>The compute ID for computing pressure does not exist.
@ -1283,6 +1348,11 @@ not exist.
<DD>The compute ID needed by the velocity command to compute temperature
does not exist.
<DT><I>Could not set finite-size particle attribute in fix rigid</I>
<DD>The particle has a finite size but its attributes could not be
determined.
<DT><I>Coulomb cutoffs of pair hybrid sub-styles do not match</I>
<DD>If using a Kspace solver, all Coulomb cutoffs of long pair styles must
@ -1550,6 +1620,10 @@ dump output.
<DD>The chosen atom style does not define the per-atom vector being
dumped.
<DT><I>Electronic temperature dropped below zero</I>
<DD>Something has gone wrong with the fix ttm electron temperature model.
<DT><I>Empty brackets in variable formula</I>
<DD>A value inside the brackets is required for this formula element.
@ -1755,6 +1829,10 @@ is a triclinic (non-orthogonal) box.
<DD>Self-explanatory
<DT><I>Fix evaporate region ID does not exist</I>
<DD>Self-explanatory
<DT><I>Fix for fix ave/atom not computed at compatible time</I>
<DD>Fixes generate their values on specific timesteps. Fix ave/atom is
@ -1808,41 +1886,50 @@ requesting the values on a non-allowed timestep.
<DD>The time window for temperature or pressure relaxation must be > 0
<DT><I>Fix npt/asphere cannot be used with atom attributes diameter or rmass</I>
<DD>An atom style that defines these attributes must be used.
<DT><I>Fix npt/asphere requires atom attributes quat, angmom, torque, shape</I>
<DD>An atom style that specifies these quantities is needed.
<DT><I>Fix npt/sphere requires atom attribute shape</I>
<DT><I>Fix npt/sphere requires atom attribute radius or shape</I>
<DD>An atom style that specifies atom shape is needed.
<DD>An atom style that defines these attributes must be used.
<DT><I>Fix npt/sphere requires atom attributes omega, torque</I>
<DD>An atom style that specifies these quantities is needed.
<DT><I>Fix npt/sphere requires spherical particle shapes</I>
<DT><I>Fix nve/asphere cannot be used with atom attributes diameter or rmass</I>
<DD>Self-explanatory.
<DD>These attributes override the shape and mass settings, so cannot be
used.
<DT><I>Fix nve/asphere requires atom attributes quat, angmom, torque, shape</I>
<DT><I>Fix nve/asphere requires atom attributes angmom, quat, torque, shape</I>
<DD>An atom style that specifies these quantities is needed.
<DT><I>Fix nve/asphere requires extended particles</I>
<DD>This fix can only be used for particles with a shape setting.
<DT><I>Fix nve/sphere requires atom attribute mu</I>
<DD>An atom style with this attribute is needed.
<DT><I>Fix nve/sphere requires atom attribute shape</I>
<DT><I>Fix nve/sphere requires atom attribute radius or shape</I>
<DD>An atom style with this attribute is needed.
<DD>An atom style that specifies these quantities is needed.
<DT><I>Fix nve/sphere requires atom attributes omega, torque</I>
<DD>An atom style with these attributes is needed.
<DT><I>Fix nve/sphere requires atom attributes radius, rmass</I>
<DT><I>Fix nve/sphere requires extended particles</I>
<DD>An atom style with these attributes is needed.
<DD>This fix can only be used for particles of a finite size.
<DT><I>Fix nve/sphere requires spherical particle shapes</I>
@ -1852,18 +1939,31 @@ requesting the values on a non-allowed timestep.
<DD>The time window for temperature relaxation must be > 0
<DT><I>Fix nvt/asphere cannot be used with atom attributes diameter or rmass</I>
<DD>These attributes override the shape and mass settings, so cannot be
used.
<DT><I>Fix nvt/asphere requires atom attributes quat, angmom, torque, shape</I>
<DD>An atom style that specifies these quantities is needed.
<DT><I>Fix nvt/sphere requires atom attribute shape</I>
<DT><I>Fix nvt/asphere requires extended particles</I>
<DD>An atom style with this attribute is needed.
<DD>This fix can only be used for particles of a finite size.
<DT><I>Fix nvt/sphere requires atom attribute radius or shape</I>
<DD>An atom style with these attributes is needed.
<DT><I>Fix nvt/sphere requires atom attributes omega, torque</I>
<DD>An atom style with these attributes is needed.
<DT><I>Fix nvt/sphere requires extended particles</I>
<DD>This fix can only be used for particles of a finite size.
<DT><I>Fix nvt/sphere requires spherical particle shapes</I>
<DD>Self-explanatory.
@ -1914,6 +2014,10 @@ are not within the required tolerances.
<DD>Cannot use fix shake while doing an energy minimization since
it turns off bonds that should contribute to the energy.
<DT><I>Fix spring couple group ID does not exist</I>
<DD>Self-explanatory.
<DT><I>Fix temp/berendsen period must be > 0.0</I>
<DD>Self-explanatory.
@ -1928,6 +2032,42 @@ it turns off bonds that should contribute to the energy.
integration fixes (nve, nvt, npt). See the fix tmd documentation for
details.
<DT><I>Fix ttm electron temperatures must be > 0.0</I>
<DD>Self-explanatory.
<DT><I>Fix ttm electronic_density must be > 0.0</I>
<DD>Self-explanatory.
<DT><I>Fix ttm electronic_specific_heat must be > 0.0</I>
<DD>Self-explanatory.
<DT><I>Fix ttm electronic_thermal_conductivity must be >= 0.0</I>
<DD>Self-explanatory.
<DT><I>Fix ttm gamma_p must be > 0.0</I>
<DD>Self-explanatory.
<DT><I>Fix ttm gamma_s must be >= 0.0</I>
<DD>Self-explanatory.
<DT><I>Fix ttm number of nodes must be > 0</I>
<DD>Self-explanatory.
<DT><I>Invalid random number seed in fix ttm command</I>
<DD>Random number seed must be > 0.
<DT><I>Fix ttm v_0 must be >= 0.0</I>
<DD>Self-explanatory.
<DT><I>Fix used in compute reduce not computed at compatible time</I>
<DD>Fixes generate their values on specific timesteps. Compute sum is
@ -1954,7 +2094,7 @@ this fix.
<DD>The atom style defined does not have these attributes.
<DT><I>Fix_modify press ID does not compute pressure</I>
<DT><I>Fix_modify pressure ID does not compute pressure</I>
<DD>The compute ID assigned to the fix must compute pressure.
@ -2175,6 +2315,10 @@ map command will force an atom map to be created.
<DD>The final tilt value must be between -1/2 and 1/2 of the perpendicular
box length.
<DT><I>Initial temperatures not all set in fix ttm</I>
<DD>Self-explantory.
<DT><I>Input line too long after variable substitution</I>
<DD>This is a hard (very large) limit defined in the input.cpp file.
@ -2590,10 +2734,18 @@ kspace, etc.
<DD>Length of read-in pair table is invalid
<DT><I>Invalid radius in Atoms section of data file</I>
<DD>Radius must be >= 0.0.
<DT><I>Invalid random number seed in set command</I>
<DD>Random number seed must be > 0.
<DT><I>Invalid region in group function in variable formula</I>
<DD>Self-explanatory.
<DT><I>Invalid region style</I>
<DD>The choice of region style is unknown.
@ -3155,14 +3307,18 @@ rRESPA cutoffs.
<DD>An atom style that stores this, like atom_style dpd, must be used.
<DT><I>Pair gayberne cannot be used with atom attribute diameter</I>
<DD>Finite-size particles must be defined with the shape command.
<DT><I>Pair gayberne epsilon a,b,c coeffs are not all set</I>
<DD>Each atom type involved in pair_style gayberne must
have these 3 coefficients set at least once.
<DT><I>Pair gayberne requires atom attributes quat, torque</I>
<DT><I>Pair gayberne requires atom attributes quat, torque, shape</I>
<DD>The atom style defined does not have these attributes.
<DD>An atom style that defines these attributes must be used.
<DT><I>Pair granular requires atom attributes radius, omega, torque</I>
@ -3192,15 +3348,25 @@ rRESPA cutoffs.
<DD>The specified cutoffs for the pair style are inconsistent.
<DT><I>Pair lubricate requires atom attributes torque, shape</I>
<DT><I>Pair lubricate cannot be used with atom attributes diameter or rmass</I>
<DD>Use a different atom style.
<DD>These attributes override the shape and mass settings, so cannot be
used.
<DT><I>Pair lubricate requires atom attributes quat, torque, shape</I>
<DD>An atom style that defines these attributes must be used.
<DT><I>Pair lubricate requires extended particles</I>
<DD>This pair style can only be used for particles with a shape
setting.
<DT><I>Pair lubricate requires mono-disperse particles</I>
<DD>This is a current restriction of this pair style.
<DT><I>Pair lubricate requires spherical particles</I>
<DT><I>Pair lubricate requires spherical, mono-disperse particles</I>
<DD>This is a current restriction of this pair style.
@ -3217,6 +3383,10 @@ rRESPA cutoffs.
<DD>Even for atomic systems, an atom map is required to find Peridynamic
bonds. Use the atom_modify command to define one.
<DT><I>Pair resquared cannot be used with atom attribute diameter</I>
<DD>This attribute overrides the shape settings, so cannot be used.
<DT><I>Pair resquared epsilon a,b,c coeffs are not all set</I>
<DD>Self-explanatory.
@ -3225,13 +3395,13 @@ bonds. Use the atom_modify command to define one.
<DD>Self-explanatory.
<DT><I>Pair resquared requires atom attributes quat, torque</I>
<DT><I>Pair resquared requires atom attributes quat, torque, shape</I>
<DD>Use a different atom style.
<DD>An atom style that defines these attributes must be used.
<DT><I>Pair style AIREBO requires atom IDs</I>
<DD>Self-explanatory.
<DD>This is a requirement to use the AIREBO potential.
<DT><I>Pair style AIREBO requires newton pair on</I>
@ -3260,6 +3430,10 @@ potential.
<DD>See the newton command. This is a restriction to use the Tersoff
potential.
<DT><I>Pair style born/coul/long requires atom attribute q</I>
<DD>An atom style that defines this attribute must be used.
<DT><I>Pair style buck/coul/cut requires atom attribute q</I>
<DD>The atom style defined does not have this attribute.
@ -3277,10 +3451,20 @@ potential.
<DD>The pair style does not have a single() function, so it can
not be invoked by bond_style quartic.
<DT><I>Pair style does not support compute group/group</I>
<P>The pair_style does not have a single() function, so it cannot be
invokded by the compute group/group command.
</P>
<DT><I>Pair style does not support fix bond/swap</I>
<P>The pair_style does not have a single() function, so it cannot be
invokded by the fix bond/swap command.
</P>
<DT><I>Pair style does not support pair_write</I>
<DD>The pair style does not have a single() function, so it can
not be invoked by the pair_write command.
<DD>The pair style does not have a single() function, so it cannot be
invoked by the pair_write command.
<DT><I>Pair style does not support rRESPA inner/middle/outer</I>
@ -3357,6 +3541,14 @@ molecule adds forces to atoms owned by other processors.
<DD>This is because atom style peri stores quantities needed by
the peridynamic potential.
<DT><I>Pair style reax requires atom IDs</I>
<DD>This is a requirement to use the ReaxFF potential.
<DT><I>Pair style reax requires newton pair on</I>
<DD>This is a requirement to use the ReaxFF potential.
<DT><I>Pair table cutoffs must all be equal to use with KSpace</I>
<DD>When using pair style table with a long-range KSpace solver, the
@ -3422,26 +3614,35 @@ needed entry.
<DD>Self-explanatory.
<DT><I>Press ID for fix nph does not exist</I>
<DT><I>Pressure ID for fix box/relax does not exist</I>
<DD>The compute ID needed to compute pressure for the fix does not
exist.
<DT><I>Press ID for fix npt does not exist</I>
<DT><I>Pressure ID for fix nph does not exist</I>
<DD>The compute ID needed to compute pressure for the fix does not
exist.
<DT><I>Press ID for fix press/berendsen does not exist</I>
<DT><I>Pressure ID for fix npt does not exist</I>
<DD>The compute ID needed to compute pressure for the fix does not
exist.
<DT><I>Press ID for thermo does not exist</I>
<DT><I>Pressure ID for fix press/berendsen does not exist</I>
<DD>The compute ID needed to compute pressure for the fix does not
exist.
<DT><I>Pressure ID for thermo does not exist</I>
<DD>The compute ID needed to compute pressure for thermodynamics does not
exist.
<DT><I>Pressure ID for fix modify does not exist</I>
<DD>Self-explanatory.
<DT><I>Proc grid in z != 1 for 2d simulation</I>
<DD>There cannot be more than 1 processor in the z dimension of a 2d
@ -3648,30 +3849,35 @@ fix group.
<DD>Self-explanatory.
<DT><I>Temp ID for fix nph does not exist</I>
<DT><I>Temperature ID for fix box/relax does not exist</I>
<DD>The compute ID needed to compute temperature for the fix does not
exist.
<DT><I>Temp ID for fix npt does not exist</I>
<DT><I>Temperature ID for fix nph does not exist</I>
<DD>The compute ID needed to compute temperature for the fix does not
exist.
<DT><I>Temp ID for fix nvt does not exist</I>
<DT><I>Temperature ID for fix npt does not exist</I>
<DD>The compute ID needed to compute temperature for the fix does not
exist.
<DT><I>Temp ID for fix press/berendsen does not exist</I>
<DT><I>Temperature ID for fix nvt does not exist</I>
<DD>The compute ID needed to compute temperature for the fix does not
exist.
<DT><I>Temperature ID for fix press/berendsen does not exist</I>
<DD>Self-explanatory.
<DT><I>Temp ID for fix temp/berendsen does not exist</I>
<DT><I>Temperature ID for fix temp/berendsen does not exist</I>
<DD>Self-explanatory.
<DT><I>Temp ID for fix temp/rescale does not exist</I>
<DT><I>Temperature ID for fix temp/rescale does not exist</I>
<DD>The compute ID needed to compute temperature for the fix does not
exist.
@ -4120,6 +4326,10 @@ on the same group of atoms that velocities are being set for.
<DD>It is not efficient to use compute centro/atom more than once.
<DT><I>More than one compute cna/atom defined</I>
<DD>It is not efficient to use compute cna/atom more than once.
<DT><I>More than one compute coord/atom</I>
<DD>It is not efficient to use compute coord/atom more than once.
@ -4144,6 +4354,14 @@ on the same group of atoms that velocities are being set for.
<DD>It is not efficient to use fix rigid more than once.
<DT><I>New thermo_style command, previous thermo_modify settings will be lost</I>
<DD>If a thermo_style command is used after a thermo_modify command, the
settings changed by the thermo_modify command will be reset to their
default values. This is because the thermo_modify commmand acts on
the currently defined thermo style, and a thermo_style command creates
a new style.
<DT><I>No fixes defined, atoms won't move</I>
<DD>If you are not using a fix like nve, nvt, npt then atom velocities and
@ -4155,6 +4373,11 @@ coordinates will not be updated during timestepping.
will integrate the body motion, but it would be more efficient to use
fix rigid.
<DT><I>Not using real units with pair reax</I>
<DD>This is most likely an error, unless you have created your own ReaxFF
parameter file in a different set of units.
<DT><I>One or more atoms are time integrated more than once</I>
<DD>This is probably an error since you typically do not want to
@ -4208,6 +4431,19 @@ different 3d grid of processors. Due to round-off, the trajectories
of your restarted simulation may diverge a little more quickly than if
you ran on the same # of processors.
<DT><I>Restart file used different boundary settings, using restart file values</I>
<P>Your input script cannot change these settings in the restart file.
</P>
<DT><I>Restart file used different newton bond setting, using restart file value</I>
<P>Your input script cannot change this setting in the restart file.
</P>
<DT><I>Restart file used different newton pair setting, using input script value</I>
<P>Your input script can change this setting in the restart file, but you
may not wish to do so.
</P>
<DT><I>Restart file version does not match LAMMPS version</I>
<DD>The version of LAMMPS that wrote the restart file does not match the
@ -4254,13 +4490,17 @@ pressure, the kinetic energy contribution from the temperature is
assumed to also be for all atoms. Thus the pressure printed by thermo
could be inaccurate.
<DT><I>Too many inner timesteps in fix ttm</I>
<DD>Self-explanatory.
<DT><I>Use special bonds = 0,1,1 with bond style fene/expand</I>
<DD>Most FENE models use this setting for the special_bonds command.
<DD>Most FENE models need this setting for the special_bonds command.
<DT><I>Use special bonds = 0,1,1 with bond style fene</I>
<DD>Most FENE models use this setting for the special_bonds command.
<DD>Most FENE models need this setting for the special_bonds command.
<DT><I>Using compute temp/deform with inconsistent fix deform remap option</I>
@ -4269,7 +4509,8 @@ by "remap v" or "remap none" as a fix deform option.
<DT><I>Using compute temp/deform with no fix deform defined</I>
<DD>Self-explanatory.
<DD>This is probably an error, since it makes little sense to use
compute temp/deform in this case.
<DT><I>Using pair tail corrections with nonperiodic system</I>