move calculation of number of neighbors to Neighbor class
this allows reusing the code in the ImbalanceNeigh class
This commit is contained in:
@ -479,27 +479,8 @@ void Finish::end(int flag)
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mesg += "\n";
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}
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// find a non-skip neighbor list containing half pairwise interactions
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// count neighbors in that list for stats purposes
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// allow it to be Kokkos neigh list as well
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for (m = 0; m < neighbor->old_nrequest; m++)
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if (neighbor->old_requests[m]->half &&
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neighbor->old_requests[m]->skip == 0 &&
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neighbor->lists[m] && neighbor->lists[m]->numneigh) break;
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nneigh = 0;
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if (m < neighbor->old_nrequest) {
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if (!neighbor->lists[m]->kokkos) {
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int inum = neighbor->lists[m]->inum;
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int *ilist = neighbor->lists[m]->ilist;
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int *numneigh = neighbor->lists[m]->numneigh;
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for (i = 0; i < inum; i++)
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nneigh += numneigh[ilist[i]];
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} else if (lmp->kokkos) nneigh = lmp->kokkos->neigh_count(m);
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}
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tmp = nneigh;
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tmp = neighbor->get_nneigh_half();
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if (tmp > 0) {
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stats(1,&tmp,&ave,&max,&min,10,histo);
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if (me == 0) {
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mesg += fmt::format("Neighs: {:11.6} ave {:11.6g} max {:11.6g} min\n",ave,max,min);
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@ -507,34 +488,16 @@ void Finish::end(int flag)
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for (i = 0; i < 10; i++) mesg += fmt::format(" {}",histo[i]);
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mesg += "\n";
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}
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}
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// find a non-skip neighbor list containing full pairwise interactions
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// count neighbors in that list for stats purposes
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// allow it to be Kokkos neigh list as well
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for (m = 0; m < neighbor->old_nrequest; m++)
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if (neighbor->old_requests[m]->full &&
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neighbor->old_requests[m]->skip == 0) break;
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nneighfull = 0;
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if (m < neighbor->old_nrequest) {
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if (!neighbor->lists[m]->kokkos && neighbor->lists[m]->numneigh) {
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int inum = neighbor->lists[m]->inum;
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int *ilist = neighbor->lists[m]->ilist;
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int *numneigh = neighbor->lists[m]->numneigh;
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for (i = 0; i < inum; i++)
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nneighfull += numneigh[ilist[i]];
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} else if (lmp->kokkos)
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nneighfull = lmp->kokkos->neigh_count(m);
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tmp = nneighfull;
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tmp = neighbor->get_nneigh_full();
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if (tmp > 0) {
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stats(1,&tmp,&ave,&max,&min,10,histo);
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if (me == 0) {
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mesg += fmt::format("FullNghs: {:11.6} ave {:11.6g} max {:11.6g} min\n",ave,max,min);
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mesg += "Histogram:";
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for (i = 0; i < 10; i++) mesg += fmt::format(" {}",histo[i]);
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mesg += "\n";
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}
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}
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if (me == 0) utils::logmesg(lmp,mesg);
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@ -594,7 +557,7 @@ void Finish::end(int flag)
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}
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/* ---------------------------------------------------------------------- */
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// FIXME: should use bigint here.
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void Finish::stats(int n, double *data,
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double *pave, double *pmax, double *pmin,
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int nhisto, int *histo)
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@ -61,19 +61,12 @@ void ImbalanceNeigh::compute(double *weight)
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}
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}
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// find suitable neighbor list
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// can only use certain conventional neighbor lists
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// NOTE: why not full list, if half does not exist?
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bigint neighsum = neighbor->get_nneigh_half();
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if (neighsum == 0) neighsum = neighbor->get_nneigh_full();
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for (req = 0; req < neighbor->old_nrequest; ++req) {
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if (neighbor->old_requests[req]->half && neighbor->old_requests[req]->skip == 0 &&
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neighbor->lists[req] && neighbor->lists[req]->numneigh)
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break;
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}
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if (req >= neighbor->old_nrequest || neighbor->ago < 0) {
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if ((neighsum == 0) || (neighbor->ago < 0)) {
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if (comm->me == 0 && !did_warn)
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error->warning(FLERR, "Balance weight neigh skipped b/c no list found");
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error->warning(FLERR, "Balance weight neigh skipped b/c no suitable list found");
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did_warn = 1;
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return;
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}
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@ -81,15 +74,8 @@ void ImbalanceNeigh::compute(double *weight)
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// neighsum = total neigh count for atoms on this proc
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// localwt = weight assigned to each owned atom
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NeighList *list = neighbor->lists[req];
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const int inum = list->inum;
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const int *const ilist = list->ilist;
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const int *const numneigh = list->numneigh;
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int nlocal = atom->nlocal;
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bigint neighsum = 0;
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for (int i = 0; i < inum; ++i) neighsum += numneigh[ilist[i]];
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double localwt = 0.0;
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const int nlocal = atom->nlocal;
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if (nlocal) localwt = 1.0 * neighsum / nlocal;
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if (nlocal && localwt <= 0.0) error->one(FLERR, "Balance weight <= 0.0");
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@ -29,6 +29,7 @@
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#include "fix.h"
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#include "force.h"
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#include "group.h"
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#include "kokkos.h"
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#include "memory.h"
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#include "modify.h"
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#include "nbin.h"
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@ -2772,6 +2773,59 @@ void Neighbor::build_collection(int istart)
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}
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}
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/* ----------------------------------------------------------------------
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for neighbor list statistics in Finish class
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------------------------------------------------------------------------- */
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bigint Neighbor::get_nneigh_full()
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{
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// find a non-skip neighbor list containing full pairwise interactions
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// count neighbors in that list for stats purposes
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// allow it to be Kokkos neigh list as well
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int m;
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for (m = 0; m < old_nrequest; m++)
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if (old_requests[m]->full && !old_requests[m]->skip) break;
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bigint nneighfull = 0;
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if (m < old_nrequest) {
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if (!lists[m]->kokkos && lists[m]->numneigh) {
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int inum = neighbor->lists[m]->inum;
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int *ilist = neighbor->lists[m]->ilist;
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int *numneigh = neighbor->lists[m]->numneigh;
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for (int i = 0; i < inum; i++)
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nneighfull += numneigh[ilist[i]];
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} else if (lmp->kokkos)
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nneighfull = lmp->kokkos->neigh_count(m);
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}
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return nneighfull;
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}
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bigint Neighbor::get_nneigh_half()
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{
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// find a non-skip neighbor list containing half pairwise interactions
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// count neighbors in that list for stats purposes
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// allow it to be Kokkos neigh list as well
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int m;
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for (m = 0; m < old_nrequest; m++)
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if (old_requests[m]->half && !old_requests[m]->skip) break;
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bigint nneighhalf = 0;
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if (m < old_nrequest) {
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if (!lists[m]->kokkos && lists[m]->numneigh) {
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int inum = neighbor->lists[m]->inum;
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int *ilist = neighbor->lists[m]->ilist;
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int *numneigh = neighbor->lists[m]->numneigh;
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for (int i = 0; i < inum; i++)
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nneighhalf += numneigh[ilist[i]];
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} else if (lmp->kokkos)
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nneighhalf = lmp->kokkos->neigh_count(m);
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}
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return nneighhalf;
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}
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/* ----------------------------------------------------------------------
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return # of bytes of allocated memory
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------------------------------------------------------------------------- */
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@ -159,6 +159,8 @@ class Neighbor : protected Pointers {
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int any_full(); // Check if any old requests had full neighbor lists
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void build_collection(int); // build peratom collection array starting at the given index
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bigint get_nneigh_full(); // return number of neighbors in a regular full neighbor list
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bigint get_nneigh_half(); // return number of neighbors in a regular half neighbor list
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double memory_usage();
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bigint last_setup_bins; // step of last neighbor::setup_bins() call
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