count each force computation as one simulation step. this avoids accessing uninitialized data, too.

This commit is contained in:
Axel Kohlmeyer
2019-02-28 11:00:55 -05:00
parent 4b8621e7ef
commit 286112ffbc
3 changed files with 6 additions and 50 deletions

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# dynamical_matrix command
## Syntax
```
dynamical_matrix group-ID style args keyword value ...
```
* group-ID = ID of group of atoms to displace
* style = *regular* or *eskm*
```
*regular* args = gamma
gamma = finite difference displacement length
*eskm* args = gamma
gamma = finite difference displacement length
```
* zero or more keyword/value pairs may be appended
* keyword = *file* or *binary*
```
*file* value = output_file
output_file = name of file to dump the dynamical matrix into
*binary* values = *yes* or *no* or *gzip*
```
## Examples
```
dynamical_matrix 1 regular 0.000001
dynamical_matrix 1 eskm 0.000001
dynamical_matrix 3 regular 0.00004 file dynmat.dat
dynamical_matrix 5 eskm 0.00000001 file dynamical.dat binary yes
```
## Description
Calculate the dynamical matrix of the selected group.
## Restrictions
None
## Related commands
None
## Default
The option defaults are file = "dynmat.dyn", binary = no