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git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14349 f3b2605a-c512-4ea7-a41b-209d697bcdaa

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sjplimp
2015-12-10 17:23:56 +00:00
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doc/run.html
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@ -8,7 +8,7 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<title>run command &mdash; LAMMPS 15 May 2015 version documentation</title>
<title>run command &mdash; LAMMPS 10 Dec 2015 version documentation</title>
@ -32,7 +32,7 @@
<link rel="top" title="LAMMPS 15 May 2015 version documentation" href="index.html"/>
<link rel="top" title="LAMMPS 10 Dec 2015 version documentation" href="index.html"/>
<script src="_static/js/modernizr.min.js"></script>
@ -211,16 +211,16 @@ the initial setup is skipped, except for printing thermodynamic info.
Note that if <em>pre</em> is set to &#8220;no&#8221; for the very 1st run LAMMPS
performs, then it is overridden, since the initial setup computations
must be done.</p>
<div class="admonition warning">
<p class="first admonition-title">Warning</p>
<p class="last">If your input script changes the system between 2
runs, then the initial setup must be performed to insure the change is
recognized by all parts of the code that are affected. Examples are
adding a <a class="reference internal" href="fix.html"><em>fix</em></a> or <a class="reference internal" href="dump.html"><em>dump</em></a> or <a class="reference internal" href="compute.html"><em>compute</em></a>,
changing a <a class="reference internal" href="neigh_modify.html"><em>neighbor</em></a> list parameter, or writing
restart file which can migrate atoms between processors. LAMMPS has
no easy way to check if this has happened, but it is an error to use
the <em>pre no</em> option in this case.</p>
<div class="admonition note">
<p class="first admonition-title">Note</p>
<p class="last">If your input script changes the system between 2 runs, then the
initial setup must be performed to insure the change is recognized by
all parts of the code that are affected. Examples are adding a
<a class="reference internal" href="fix.html"><em>fix</em></a> or <a class="reference internal" href="dump.html"><em>dump</em></a> or <a class="reference internal" href="compute.html"><em>compute</em></a>, changing
a <a class="reference internal" href="neigh_modify.html"><em>neighbor</em></a> list parameter, or writing restart file
which can migrate atoms between processors. LAMMPS has no easy way to
check if this has happened, but it is an error to use the <em>pre no</em>
option in this case.</p>
</div>
<p>If <em>post</em> is specified as &#8220;no&#8221;, the full timing summary is skipped;
only a one-line summary timing is printed.</p>
@ -280,10 +280,10 @@ command:</p>
<em>every</em> keyword, then the 1st run will do the full setup and the last
run will print the full timing summary, but these operations will be
skipped for intermediate runs.</p>
<div class="admonition warning">
<p class="first admonition-title">Warning</p>
<p class="last">You might hope to specify a command that exits the run
by jumping out of the loop, e.g.</p>
<div class="admonition note">
<p class="first admonition-title">Note</p>
<p class="last">You might hope to specify a command that exits the run by
jumping out of the loop, e.g.</p>
</div>
<div class="highlight-python"><div class="highlight"><pre>variable t equal temp
run 10000 every 100 &quot;if &#39;$t &lt; 300.0&#39; then &#39;jump SELF afterrun&#39;&quot;
@ -330,7 +330,7 @@ timestep + N, pre = yes, and post = yes.</p>
<div role="contentinfo">
<p>
&copy; Copyright .
&copy; Copyright 2013 Sandia Corporation.
</p>
</div>
Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a <a href="https://github.com/snide/sphinx_rtd_theme">theme</a> provided by <a href="https://readthedocs.org">Read the Docs</a>.
@ -351,7 +351,7 @@ timestep + N, pre = yes, and post = yes.</p>
<script type="text/javascript">
var DOCUMENTATION_OPTIONS = {
URL_ROOT:'./',
VERSION:'15 May 2015 version',
VERSION:'10 Dec 2015 version',
COLLAPSE_INDEX:false,
FILE_SUFFIX:'.html',
HAS_SOURCE: true