From 29ce252d9ab37e7fb2decea62b3871fef2f2bc1e Mon Sep 17 00:00:00 2001 From: sjplimp Date: Thu, 20 Oct 2011 15:06:55 +0000 Subject: [PATCH] git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@7151 f3b2605a-c512-4ea7-a41b-209d697bcdaa --- doc/Section_commands.html | 30 +++++++++++++++--------------- doc/Section_commands.txt | 4 ++++ doc/fix.html | 1 - doc/fix.txt | 1 - doc/pair_coeff.html | 2 ++ doc/pair_coeff.txt | 2 ++ doc/pair_style.html | 2 ++ doc/pair_style.txt | 2 ++ 8 files changed, 27 insertions(+), 17 deletions(-) diff --git a/doc/Section_commands.html b/doc/Section_commands.html index 839ca37981..1781bf3b32 100644 --- a/doc/Section_commands.html +++ b/doc/Section_commands.html @@ -341,12 +341,12 @@ of each style or click on the style itself for a full description: efieldenforce2devaporateexternalfreezegcmcgravityheat indentlangevinlineforcemomentummovemsstnebnph nphugnph/aspherenph/spherenptnpt/aspherenpt/spherenvenve/asphere -nve/limitnve/noforcenve/spherenvtnvt/aspherenvt/sllodnvt/sphereorient/fcc -planeforcepoemspourpress/berendsenprintqeq/combreax/bondsrecenter -restrainrigidrigid/nverigid/nvtsetforceshakespringspring/rg -spring/selfsrdstore/forcestore/statetemp/berendsentemp/rescalethermal/conductivitytmd -ttmviscosityviscouswall/colloidwall/granwall/harmonicwall/lj126wall/lj93 -wall/reflectwall/regionwall/srd +nve/limitnve/linenve/noforcenve/spherenve/trinvtnvt/aspherenvt/sllod +nvt/sphereorient/fccplaneforcepoemspourpress/berendsenprintqeq/comb +reax/bondsrecenterrestrainrigidrigid/nverigid/nvtsetforceshake +springspring/rgspring/selfsrdstore/forcestore/statetemp/berendsentemp/rescale +thermal/conductivitytmdttmviscosityviscouswall/colloidwall/granwall/harmonic +wall/lj126wall/lj93wall/reflectwall/regionwall/srd

These are fix styles contributed by users, which can be used if @@ -419,15 +419,15 @@ potentials. Click on the style itself for a full description: dpddpd/tstatdsmceam eam/alloyeam/fseimgauss gaybernegran/hertz/historygran/hookegran/hooke/history -hbond/dreiding/ljhbond/dreiding/morselj/charmm/coul/charmmlj/charmm/coul/charmm/implicit -lj/charmm/coul/longlj/class2lj/class2/coul/cutlj/class2/coul/long -lj/cutlj/cut/coul/cutlj/cut/coul/debyelj/cut/coul/long -lj/cut/coul/long/tip4plj/expandlj/gromacslj/gromacs/coul/gromacs -lj/smoothlj96/cutlubricatemeam -morseperi/lpsperi/pmbreax -reboresquaredsoftsw -tabletersofftersoff/zblyukawa -yukawa/colloid +hbond/dreiding/ljhbond/dreiding/morseline/ljlj/charmm/coul/charmm +lj/charmm/coul/charmm/implicitlj/charmm/coul/longlj/class2lj/class2/coul/cut +lj/class2/coul/longlj/cutlj/cut/coul/cutlj/cut/coul/debye +lj/cut/coul/longlj/cut/coul/long/tip4plj/expandlj/gromacs +lj/gromacs/coul/gromacslj/smoothlj96/cutlubricate +meammorseperi/lpsperi/pmb +reaxreboresquaredsoft +swtabletersofftersoff/zbl +tri/ljyukawayukawa/colloid

These are pair styles contributed by users, which can be used if diff --git a/doc/Section_commands.txt b/doc/Section_commands.txt index d6e2e5dd17..67700fd323 100644 --- a/doc/Section_commands.txt +++ b/doc/Section_commands.txt @@ -438,8 +438,10 @@ of each style or click on the style itself for a full description: "nve"_fix_nve.html, "nve/asphere"_fix_nve_asphere.html, "nve/limit"_fix_nve_limit.html, +"nve/line"_fix_nve_line.html, "nve/noforce"_fix_nve_noforce.html, "nve/sphere"_fix_nve_sphere.html, +"nve/tri"_fix_nve_tri.html, "nvt"_fix_nh.html, "nvt/asphere"_fix_nvt_asphere.html, "nvt/sllod"_fix_nvt_sllod.html, @@ -638,6 +640,7 @@ potentials. Click on the style itself for a full description: "gran/hooke/history"_pair_gran.html, "hbond/dreiding/lj"_pair_hbond_dreiding.html, "hbond/dreiding/morse"_pair_hbond_dreiding.html, +"line/lj"_pair_line_lj.html, "lj/charmm/coul/charmm"_pair_charmm.html, "lj/charmm/coul/charmm/implicit"_pair_charmm.html, "lj/charmm/coul/long"_pair_charmm.html, @@ -667,6 +670,7 @@ potentials. Click on the style itself for a full description: "table"_pair_table.html, "tersoff"_pair_tersoff.html, "tersoff/zbl"_pair_tersoff_zbl.html, +"tri/lj"_pair_tri_lj.html, "yukawa"_pair_yukawa.html, "yukawa/colloid"_pair_yukawa_colloid.html :tb(c=4,ea=c) diff --git a/doc/fix.html b/doc/fix.html index c005536590..6d84638722 100644 --- a/doc/fix.html +++ b/doc/fix.html @@ -184,7 +184,6 @@ list of fix styles available in LAMMPS:

  • gcmc - grand canonical insertions/deletions
  • heat - add/subtract momentum-conserving heat
  • indent - impose force due to an indenter -
  • integrateU - Stokesian Dynamics evolution
  • langevin - Langevin temperature control
  • lineforce - constrain atoms to move in a line
  • momentum - zero the linear and/or angular momentum of a group of atoms diff --git a/doc/fix.txt b/doc/fix.txt index 6f59881200..6b824cf10c 100644 --- a/doc/fix.txt +++ b/doc/fix.txt @@ -179,7 +179,6 @@ list of fix styles available in LAMMPS: "gcmc"_fix_gcmc.html - grand canonical insertions/deletions "heat"_fix_heat.html - add/subtract momentum-conserving heat "indent"_fix_indent.html - impose force due to an indenter -"integrateU"_fix_integrateU.html - Stokesian Dynamics evolution "langevin"_fix_langevin.html - Langevin temperature control "lineforce"_fix_lineforce.html - constrain atoms to move in a line "momentum"_fix_momentum.html - zero the linear and/or angular momentum of a group of atoms diff --git a/doc/pair_coeff.html b/doc/pair_coeff.html index fb5ffd893a..750a34767b 100644 --- a/doc/pair_coeff.html +++ b/doc/pair_coeff.html @@ -113,6 +113,7 @@ the pair_style command, and coefficients specified by the associated
  • pair_style gran/hooke/history - granular potential without history effects
  • pair_style hbond/dreiding/lj - DREIDING hydrogen bonding LJ potential
  • pair_style hbond/dreiding/morse - DREIDING hydrogen bonding Morse potential +
  • pair_style line/lj - LJ potential between line segments
  • pair_style lj/charmm/coul/charmm - CHARMM potential with cutoff Coulomb
  • pair_style lj/charmm/coul/charmm/implicit - CHARMM for implicit solvent
  • pair_style lj/charmm/coul/long - CHARMM with long-range Coulomb @@ -142,6 +143,7 @@ the pair_style command, and coefficients specified by the associated
  • pair_style table - tabulated pair potential
  • pair_style tersoff - Tersoff 3-body potential
  • pair_style tersoff/zbl - Tersoff/ZBL 3-body potential +
  • pair_style tri/lj - LJ potential between triangles
  • pair_style yukawa - Yukawa potential
  • pair_style yukawa/colloid - screened Yukawa potential for finite-size particles diff --git a/doc/pair_coeff.txt b/doc/pair_coeff.txt index 5a6c00a247..02aebc35f6 100644 --- a/doc/pair_coeff.txt +++ b/doc/pair_coeff.txt @@ -110,6 +110,7 @@ the pair_style command, and coefficients specified by the associated "pair_style gran/hooke/history"_pair_gran.html - granular potential without history effects "pair_style hbond/dreiding/lj"_pair_hbond_dreiding.html - DREIDING hydrogen bonding LJ potential "pair_style hbond/dreiding/morse"_pair_hbond_dreiding.html - DREIDING hydrogen bonding Morse potential +"pair_style line/lj"_pair_line_lj.html - LJ potential between line segments "pair_style lj/charmm/coul/charmm"_pair_charmm.html - CHARMM potential with cutoff Coulomb "pair_style lj/charmm/coul/charmm/implicit"_pair_charmm.html - CHARMM for implicit solvent "pair_style lj/charmm/coul/long"_pair_charmm.html - CHARMM with long-range Coulomb @@ -139,6 +140,7 @@ the pair_style command, and coefficients specified by the associated "pair_style table"_pair_table.html - tabulated pair potential "pair_style tersoff"_pair_tersoff.html - Tersoff 3-body potential "pair_style tersoff/zbl"_pair_tersoff_zbl.html - Tersoff/ZBL 3-body potential +"pair_style tri/lj"_pair_tri_lj.html - LJ potential between triangles "pair_style yukawa"_pair_yukawa.html - Yukawa potential "pair_style yukawa/colloid"_pair_yukawa_colloid.html - screened Yukawa potential for finite-size particles :ul diff --git a/doc/pair_style.html b/doc/pair_style.html index 0fd6871819..b00d2360e5 100644 --- a/doc/pair_style.html +++ b/doc/pair_style.html @@ -115,6 +115,7 @@ the pair_style command, and coefficients specified by the associated
  • pair_style gran/hooke/history - granular potential without history effects
  • pair_style hbond/dreiding/lj - DREIDING hydrogen bonding LJ potential
  • pair_style hbond/dreiding/morse - DREIDING hydrogen bonding Morse potential +
  • pair_style line/lj - LJ potential between line segments
  • pair_style lj/charmm/coul/charmm - CHARMM potential with cutoff Coulomb
  • pair_style lj/charmm/coul/charmm/implicit - CHARMM for implicit solvent
  • pair_style lj/charmm/coul/long - CHARMM with long-range Coulomb @@ -144,6 +145,7 @@ the pair_style command, and coefficients specified by the associated
  • pair_style table - tabulated pair potential
  • pair_style tersoff - Tersoff 3-body potential
  • pair_style tersoff/zbl - Tersoff/ZBL 3-body potential +
  • pair_style tri/lj - LJ potential between triangles
  • pair_style yukawa - Yukawa potential
  • pair_style yukawa/colloid - screened Yukawa potential for finite-size particles diff --git a/doc/pair_style.txt b/doc/pair_style.txt index d7ae16d690..c450e3272a 100644 --- a/doc/pair_style.txt +++ b/doc/pair_style.txt @@ -112,6 +112,7 @@ the pair_style command, and coefficients specified by the associated "pair_style gran/hooke/history"_pair_gran.html - granular potential without history effects "pair_style hbond/dreiding/lj"_pair_hbond_dreiding.html - DREIDING hydrogen bonding LJ potential "pair_style hbond/dreiding/morse"_pair_hbond_dreiding.html - DREIDING hydrogen bonding Morse potential +"pair_style line/lj"_pair_line_lj.html - LJ potential between line segments "pair_style lj/charmm/coul/charmm"_pair_charmm.html - CHARMM potential with cutoff Coulomb "pair_style lj/charmm/coul/charmm/implicit"_pair_charmm.html - CHARMM for implicit solvent "pair_style lj/charmm/coul/long"_pair_charmm.html - CHARMM with long-range Coulomb @@ -141,6 +142,7 @@ the pair_style command, and coefficients specified by the associated "pair_style table"_pair_table.html - tabulated pair potential "pair_style tersoff"_pair_tersoff.html - Tersoff 3-body potential "pair_style tersoff/zbl"_pair_tersoff_zbl.html - Tersoff/ZBL 3-body potential +"pair_style tri/lj"_pair_tri_lj.html - LJ potential between triangles "pair_style yukawa"_pair_yukawa.html - Yukawa potential "pair_style yukawa/colloid"_pair_yukawa_colloid.html - screened Yukawa potential for finite-size particles :ul