correct link in AtC html docs

2018-08-22 19:16:11 -04:00
parent 4074c4c67f
commit 2aa4770e0d
78 changed files with 78 additions and 78 deletions
--- a/doc/src/USER/atc/man_add_molecule.html
+++ b/doc/src/USER/atc/man_add_molecule.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_add_species.html
+++ b/doc/src/USER/atc/man_add_species.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_atom_element_map.html
+++ b/doc/src/USER/atc/man_atom_element_map.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_atom_weight.html
+++ b/doc/src/USER/atc/man_atom_weight.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_atomic_charge.html
+++ b/doc/src/USER/atc/man_atomic_charge.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_boundary.html
+++ b/doc/src/USER/atc/man_boundary.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_boundary_dynamics.html
+++ b/doc/src/USER/atc/man_boundary_dynamics.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_boundary_faceset.html
+++ b/doc/src/USER/atc/man_boundary_faceset.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_boundary_integral.html
+++ b/doc/src/USER/atc/man_boundary_integral.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_consistent_fe_initialization.html
+++ b/doc/src/USER/atc/man_consistent_fe_initialization.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_contour_integral.html
+++ b/doc/src/USER/atc/man_contour_integral.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_control.html
+++ b/doc/src/USER/atc/man_control.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_control_momentum.html
+++ b/doc/src/USER/atc/man_control_momentum.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_control_thermal.html
+++ b/doc/src/USER/atc/man_control_thermal.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_control_thermal_correction_max_iterations.html
+++ b/doc/src/USER/atc/man_control_thermal_correction_max_iterations.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_decomposition.html
+++ b/doc/src/USER/atc/man_decomposition.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_electron_integration.html
+++ b/doc/src/USER/atc/man_electron_integration.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_equilibrium_start.html
+++ b/doc/src/USER/atc/man_equilibrium_start.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_extrinsic_exchange.html
+++ b/doc/src/USER/atc/man_extrinsic_exchange.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_fe_md_boundary.html
+++ b/doc/src/USER/atc/man_fe_md_boundary.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_fem_mesh.html
+++ b/doc/src/USER/atc/man_fem_mesh.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_filter_scale.html
+++ b/doc/src/USER/atc/man_filter_scale.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_filter_type.html
+++ b/doc/src/USER/atc/man_filter_type.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_fix_atc.html
+++ b/doc/src/USER/atc/man_fix_atc.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_fix_flux.html
+++ b/doc/src/USER/atc/man_fix_flux.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_fix_nodes.html
+++ b/doc/src/USER/atc/man_fix_nodes.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_hardy_computes.html
+++ b/doc/src/USER/atc/man_hardy_computes.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_hardy_fields.html
+++ b/doc/src/USER/atc/man_hardy_fields.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_hardy_gradients.html
+++ b/doc/src/USER/atc/man_hardy_gradients.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_hardy_kernel.html
+++ b/doc/src/USER/atc/man_hardy_kernel.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_hardy_on_the_fly.html
+++ b/doc/src/USER/atc/man_hardy_on_the_fly.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_hardy_rates.html
+++ b/doc/src/USER/atc/man_hardy_rates.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_initial.html
+++ b/doc/src/USER/atc/man_initial.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_internal_atom_integrate.html
+++ b/doc/src/USER/atc/man_internal_atom_integrate.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_internal_element_set.html
+++ b/doc/src/USER/atc/man_internal_element_set.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_internal_quadrature.html
+++ b/doc/src/USER/atc/man_internal_quadrature.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_kernel_function.html
+++ b/doc/src/USER/atc/man_kernel_function.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_localized_lambda.html
+++ b/doc/src/USER/atc/man_localized_lambda.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_lumped_lambda_solve.html
+++ b/doc/src/USER/atc/man_lumped_lambda_solve.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_mask_direction.html
+++ b/doc/src/USER/atc/man_mask_direction.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_mass_matrix.html
+++ b/doc/src/USER/atc/man_mass_matrix.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_material.html
+++ b/doc/src/USER/atc/man_material.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_mesh_add_to_nodeset.html
+++ b/doc/src/USER/atc/man_mesh_add_to_nodeset.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_mesh_create.html
+++ b/doc/src/USER/atc/man_mesh_create.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_mesh_create_elementset.html
+++ b/doc/src/USER/atc/man_mesh_create_elementset.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_mesh_create_faceset_box.html
+++ b/doc/src/USER/atc/man_mesh_create_faceset_box.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_mesh_create_faceset_plane.html
+++ b/doc/src/USER/atc/man_mesh_create_faceset_plane.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_mesh_create_nodeset.html
+++ b/doc/src/USER/atc/man_mesh_create_nodeset.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_mesh_delete_elements.html
+++ b/doc/src/USER/atc/man_mesh_delete_elements.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_mesh_nodeset_to_elementset.html
+++ b/doc/src/USER/atc/man_mesh_nodeset_to_elementset.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_mesh_output.html
+++ b/doc/src/USER/atc/man_mesh_output.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_mesh_quadrature.html
+++ b/doc/src/USER/atc/man_mesh_quadrature.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_mesh_read.html
+++ b/doc/src/USER/atc/man_mesh_read.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_mesh_write.html
+++ b/doc/src/USER/atc/man_mesh_write.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_momentum_time_integration.html
+++ b/doc/src/USER/atc/man_momentum_time_integration.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_output.html
+++ b/doc/src/USER/atc/man_output.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_output_elementset.html
+++ b/doc/src/USER/atc/man_output_elementset.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_output_nodeset.html
+++ b/doc/src/USER/atc/man_output_nodeset.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_pair_interactions.html
+++ b/doc/src/USER/atc/man_pair_interactions.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_poisson_solver.html
+++ b/doc/src/USER/atc/man_poisson_solver.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_read_restart.html
+++ b/doc/src/USER/atc/man_read_restart.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_remove_molecule.html
+++ b/doc/src/USER/atc/man_remove_molecule.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_remove_source.html
+++ b/doc/src/USER/atc/man_remove_source.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_remove_species.html
+++ b/doc/src/USER/atc/man_remove_species.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_reset_atomic_reference_positions.html
+++ b/doc/src/USER/atc/man_reset_atomic_reference_positions.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_reset_time.html
+++ b/doc/src/USER/atc/man_reset_time.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_sample_frequency.html
+++ b/doc/src/USER/atc/man_sample_frequency.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_set.html
+++ b/doc/src/USER/atc/man_set.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_source.html
+++ b/doc/src/USER/atc/man_source.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_source_integration.html
+++ b/doc/src/USER/atc/man_source_integration.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_temperature_definition.html
+++ b/doc/src/USER/atc/man_temperature_definition.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_thermal_time_integration.html
+++ b/doc/src/USER/atc/man_thermal_time_integration.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_time_filter.html
+++ b/doc/src/USER/atc/man_time_filter.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_track_displacement.html
+++ b/doc/src/USER/atc/man_track_displacement.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_unfix_flux.html
+++ b/doc/src/USER/atc/man_unfix_flux.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_unfix_nodes.html
+++ b/doc/src/USER/atc/man_unfix_nodes.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_write_atom_weights.html
+++ b/doc/src/USER/atc/man_write_atom_weights.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>
--- a/doc/src/USER/atc/man_write_restart.html
+++ b/doc/src/USER/atc/man_write_restart.html
@ -11,7 +11,7 @@
  <a href="http://lammps.sandia.gov">LAMMPS Website</a> &nbsp; &nbsp;
  <a href="../../Manual.html">LAMMPS Manual</a> &nbsp; &nbsp;
  <a href="../../fix_atc.html">USER-AtC Manual</a> &nbsp; &nbsp;
-  <a href="../../Section_commands.html#comm">Commands</a>
+  <a href="../../Commands_all.html">Commands</a>
 </center>
 <hr>