diff --git a/doc/src/angle_charmm.rst b/doc/src/angle_charmm.rst index 8410f0f8c0..e557648d9f 100644 --- a/doc/src/angle_charmm.rst +++ b/doc/src/angle_charmm.rst @@ -1,16 +1,12 @@ .. index:: angle_style charmm +.. index:: angle_style charmm/intel +.. index:: angle_style charmm/kk +.. index:: angle_style charmm/omp angle_style charmm command ========================== -angle_style charmm/intel command -================================ - -angle_style charmm/kk command -============================= - -angle_style charmm/omp command -============================== +Accelerator Variants: *charmm/intel*, *charmm/kk*, *charmm/omp* Syntax """""" diff --git a/doc/src/angle_class2.rst b/doc/src/angle_class2.rst index 7d2fdd5d66..bf0305055a 100644 --- a/doc/src/angle_class2.rst +++ b/doc/src/angle_class2.rst @@ -1,13 +1,12 @@ .. index:: angle_style class2 +.. index:: angle_style class2/kk +.. index:: angle_style class2/omp +.. index:: angle_style class2/p6 angle_style class2 command ========================== -angle_style class2/kk command -============================= - -angle_style class2/omp command -============================== +Accelerator Variants: *class2/kk*, *class2/omp* angle_style class2/p6 command ============================= diff --git a/doc/src/angle_cosine.rst b/doc/src/angle_cosine.rst index e39e68b2e1..aea144f7be 100644 --- a/doc/src/angle_cosine.rst +++ b/doc/src/angle_cosine.rst @@ -1,13 +1,11 @@ .. index:: angle_style cosine +.. index:: angle_style cosine/omp +.. index:: angle_style cosine/kk angle_style cosine command ========================== -angle_style cosine/omp command -============================== - -angle_style cosine/kk command -============================= +Accelerator Variants: *cosine/omp*, *cosine/kk* Syntax """""" diff --git a/doc/src/angle_cosine_delta.rst b/doc/src/angle_cosine_delta.rst index 017b64f8b0..280e6ea2c4 100644 --- a/doc/src/angle_cosine_delta.rst +++ b/doc/src/angle_cosine_delta.rst @@ -1,10 +1,10 @@ .. index:: angle_style cosine/delta +.. index:: angle_style cosine/delta/omp angle_style cosine/delta command ================================ -angle_style cosine/delta/omp command -==================================== +Accelerator Variants: *cosine/delta/omp* Syntax """""" diff --git a/doc/src/angle_cosine_periodic.rst b/doc/src/angle_cosine_periodic.rst index aff4ba2322..71c2caa3f0 100644 --- a/doc/src/angle_cosine_periodic.rst +++ b/doc/src/angle_cosine_periodic.rst @@ -1,10 +1,10 @@ .. index:: angle_style cosine/periodic +.. index:: angle_style cosine/periodic/omp angle_style cosine/periodic command =================================== -angle_style cosine/periodic/omp command -======================================= +Accelerator Variants: *cosine/periodic/omp* Syntax """""" diff --git a/doc/src/angle_cosine_shift.rst b/doc/src/angle_cosine_shift.rst index 26603e48be..71bda194c7 100644 --- a/doc/src/angle_cosine_shift.rst +++ b/doc/src/angle_cosine_shift.rst @@ -1,10 +1,10 @@ .. index:: angle_style cosine/shift +.. index:: angle_style cosine/shift/omp angle_style cosine/shift command -================================= +================================ -angle_style cosine/shift/omp command -==================================== +Accelerator Variants: *cosine/shift/omp* Syntax """""" diff --git a/doc/src/angle_cosine_shift_exp.rst b/doc/src/angle_cosine_shift_exp.rst index fbdb76aa45..4ae4928751 100644 --- a/doc/src/angle_cosine_shift_exp.rst +++ b/doc/src/angle_cosine_shift_exp.rst @@ -1,10 +1,10 @@ .. index:: angle_style cosine/shift/exp +.. index:: angle_style cosine/shift/exp/omp angle_style cosine/shift/exp command ==================================== -angle_style cosine/shift/exp/omp command -======================================== +Accelerator Variants: *cosine/shift/exp/omp* Syntax """""" diff --git a/doc/src/angle_cosine_squared.rst b/doc/src/angle_cosine_squared.rst index 49ddf59741..4a6a1debe9 100644 --- a/doc/src/angle_cosine_squared.rst +++ b/doc/src/angle_cosine_squared.rst @@ -1,10 +1,10 @@ .. index:: angle_style cosine/squared +.. index:: angle_style cosine/squared/omp angle_style cosine/squared command ================================== -angle_style cosine/squared/omp command -====================================== +Accelerator Variants: *cosine/squared/omp* Syntax """""" diff --git a/doc/src/angle_cross.rst b/doc/src/angle_cross.rst index 5769e756c3..3cd1884be0 100644 --- a/doc/src/angle_cross.rst +++ b/doc/src/angle_cross.rst @@ -1,7 +1,7 @@ .. index:: angle_style cross angle_style cross command -========================== +========================= Syntax """""" diff --git a/doc/src/angle_dipole.rst b/doc/src/angle_dipole.rst index 3b4e4f5304..4dd8aadfb8 100644 --- a/doc/src/angle_dipole.rst +++ b/doc/src/angle_dipole.rst @@ -1,10 +1,10 @@ .. index:: angle_style dipole +.. index:: angle_style dipole/omp angle_style dipole command ========================== -angle_style dipole/omp command -============================== +Accelerator Variants: *dipole/omp* Syntax """""" diff --git a/doc/src/angle_fourier.rst b/doc/src/angle_fourier.rst index cbe6544271..231f45e808 100644 --- a/doc/src/angle_fourier.rst +++ b/doc/src/angle_fourier.rst @@ -1,10 +1,10 @@ .. index:: angle_style fourier +.. index:: angle_style fourier/omp angle_style fourier command =========================== -angle_style fourier/omp command -=============================== +Accelerator Variants: *fourier/omp* Syntax """""" diff --git a/doc/src/angle_fourier_simple.rst b/doc/src/angle_fourier_simple.rst index b36f69cbec..14b4bbcfe9 100644 --- a/doc/src/angle_fourier_simple.rst +++ b/doc/src/angle_fourier_simple.rst @@ -1,10 +1,10 @@ .. index:: angle_style fourier/simple +.. index:: angle_style fourier/simple/omp angle_style fourier/simple command ================================== -angle_style fourier/simple/omp command -====================================== +Accelerator Variants: *fourier/simple/omp* Syntax """""" diff --git a/doc/src/angle_harmonic.rst b/doc/src/angle_harmonic.rst index c6ad93c3ec..06cf1d460b 100644 --- a/doc/src/angle_harmonic.rst +++ b/doc/src/angle_harmonic.rst @@ -1,16 +1,12 @@ .. index:: angle_style harmonic +.. index:: angle_style harmonic/intel +.. index:: angle_style harmonic/kk +.. index:: angle_style harmonic/omp angle_style harmonic command ============================ -angle_style harmonic/intel command -================================== - -angle_style harmonic/kk command -=============================== - -angle_style harmonic/omp command -================================ +Accelerator Variants: *harmonic/intel*, *harmonic/kk*, *harmonic/omp* Syntax """""" diff --git a/doc/src/angle_quartic.rst b/doc/src/angle_quartic.rst index 71297e60a0..7dfb4b2896 100644 --- a/doc/src/angle_quartic.rst +++ b/doc/src/angle_quartic.rst @@ -1,10 +1,10 @@ .. index:: angle_style quartic +.. index:: angle_style quartic/omp angle_style quartic command =========================== -angle_style quartic/omp command -=============================== +Accelerator Variants: *quartic/omp* Syntax """""" diff --git a/doc/src/angle_sdk.rst b/doc/src/angle_sdk.rst index f5583d5013..340a3e4de7 100644 --- a/doc/src/angle_sdk.rst +++ b/doc/src/angle_sdk.rst @@ -1,10 +1,10 @@ .. index:: angle_style sdk +.. index:: angle_style sdk/omp angle_style sdk command ======================= -angle_style sdk/omp command -=========================== +Accelerator Variants: *sdk/omp* Syntax """""" diff --git a/doc/src/angle_table.rst b/doc/src/angle_table.rst index d8d9476620..cad9f5a82f 100644 --- a/doc/src/angle_table.rst +++ b/doc/src/angle_table.rst @@ -1,10 +1,10 @@ .. index:: angle_style table +.. index:: angle_style table/omp angle_style table command ========================= -angle_style table/omp command -============================= +Accelerator Variants: *table/omp* Syntax """""" diff --git a/doc/src/bond_class2.rst b/doc/src/bond_class2.rst index 41eb2b4e50..aea503738f 100644 --- a/doc/src/bond_class2.rst +++ b/doc/src/bond_class2.rst @@ -1,13 +1,11 @@ .. index:: bond_style class2 +.. index:: bond_style class2/omp +.. index:: bond_style class2/kk bond_style class2 command ========================= -bond_style class2/omp command -============================= - -bond_style class2/kk command -============================ +Accelerator Variants: *class2/omp*, *class2/kk* Syntax """""" diff --git a/doc/src/bond_fene.rst b/doc/src/bond_fene.rst index 8ec117bf24..0c6a37ca62 100644 --- a/doc/src/bond_fene.rst +++ b/doc/src/bond_fene.rst @@ -1,16 +1,12 @@ .. index:: bond_style fene +.. index:: bond_style fene/intel +.. index:: bond_style fene/kk +.. index:: bond_style fene/omp bond_style fene command ======================= -bond_style fene/intel command -============================= - -bond_style fene/kk command -========================== - -bond_style fene/omp command -=========================== +Accelerator Variants: *fene/intel*, *fene/kk*, *fene/omp* Syntax """""" diff --git a/doc/src/bond_fene_expand.rst b/doc/src/bond_fene_expand.rst index 5bcb409238..1be06561e9 100644 --- a/doc/src/bond_fene_expand.rst +++ b/doc/src/bond_fene_expand.rst @@ -1,10 +1,10 @@ .. index:: bond_style fene/expand +.. index:: bond_style fene/expand/omp bond_style fene/expand command ============================== -bond_style fene/expand/omp command -================================== +Accelerator Variants: *fene/expand/omp* Syntax """""" diff --git a/doc/src/bond_gromos.rst b/doc/src/bond_gromos.rst index f09e5761fe..d4eb958ebe 100644 --- a/doc/src/bond_gromos.rst +++ b/doc/src/bond_gromos.rst @@ -1,10 +1,10 @@ .. index:: bond_style gromos +.. index:: bond_style gromos/omp bond_style gromos command ========================= -bond_style gromos/omp command -============================= +Accelerator Variants: *gromos/omp* Syntax """""" diff --git a/doc/src/bond_harmonic.rst b/doc/src/bond_harmonic.rst index eaa1ee7986..e3320f2e19 100644 --- a/doc/src/bond_harmonic.rst +++ b/doc/src/bond_harmonic.rst @@ -1,16 +1,12 @@ .. index:: bond_style harmonic +.. index:: bond_style harmonic/intel +.. index:: bond_style harmonic/kk +.. index:: bond_style harmonic/omp bond_style harmonic command =========================== -bond_style harmonic/intel command -================================= - -bond_style harmonic/kk command -============================== - -bond_style harmonic/omp command -=============================== +Accelerator Variants: *harmonic/intel*, *harmonic/kk*, *harmonic/omp* Syntax """""" diff --git a/doc/src/bond_harmonic_shift.rst b/doc/src/bond_harmonic_shift.rst index c124bacf0f..469c370969 100644 --- a/doc/src/bond_harmonic_shift.rst +++ b/doc/src/bond_harmonic_shift.rst @@ -1,10 +1,10 @@ .. index:: bond_style harmonic/shift +.. index:: bond_style harmonic/shift/omp bond_style harmonic/shift command ================================= -bond_style harmonic/shift/omp command -===================================== +Accelerator Variants: *harmonic/shift/omp* Syntax """""" diff --git a/doc/src/bond_harmonic_shift_cut.rst b/doc/src/bond_harmonic_shift_cut.rst index e1b7e990d4..d0f44740b3 100644 --- a/doc/src/bond_harmonic_shift_cut.rst +++ b/doc/src/bond_harmonic_shift_cut.rst @@ -1,10 +1,10 @@ .. index:: bond_style harmonic/shift/cut +.. index:: bond_style harmonic/shift/cut/omp bond_style harmonic/shift/cut command ===================================== -bond_style harmonic/shift/cut/omp command -========================================= +Accelerator Variants: *harmonic/shift/cut/omp* Syntax """""" diff --git a/doc/src/bond_morse.rst b/doc/src/bond_morse.rst index 64fc61298a..f096624ba0 100644 --- a/doc/src/bond_morse.rst +++ b/doc/src/bond_morse.rst @@ -1,10 +1,10 @@ .. index:: bond_style morse +.. index:: bond_style morse/omp bond_style morse command ======================== -bond_style morse/omp command -============================ +Accelerator Variants: *morse/omp* Syntax """""" diff --git a/doc/src/bond_nonlinear.rst b/doc/src/bond_nonlinear.rst index 75ab4ad347..77271502ea 100644 --- a/doc/src/bond_nonlinear.rst +++ b/doc/src/bond_nonlinear.rst @@ -1,10 +1,10 @@ .. index:: bond_style nonlinear +.. index:: bond_style nonlinear/omp bond_style nonlinear command ============================ -bond_style nonlinear/omp command -================================ +Accelerator Variants: *nonlinear/omp* Syntax """""" diff --git a/doc/src/bond_oxdna.rst b/doc/src/bond_oxdna.rst index ada2f0e1ed..3f52424d49 100644 --- a/doc/src/bond_oxdna.rst +++ b/doc/src/bond_oxdna.rst @@ -1,4 +1,6 @@ .. index:: bond_style oxdna/fene +.. index:: bond_style oxdna2/fene +.. index:: bond_style oxrna2/fene bond_style oxdna/fene command ============================= diff --git a/doc/src/bond_quartic.rst b/doc/src/bond_quartic.rst index d54c19bbd4..8c5b363e54 100644 --- a/doc/src/bond_quartic.rst +++ b/doc/src/bond_quartic.rst @@ -1,10 +1,10 @@ .. index:: bond_style quartic +.. index:: bond_style quartic/omp bond_style quartic command ========================== -bond_style quartic/omp command -============================== +Accelerator Variants: *quartic/omp* Syntax """""" diff --git a/doc/src/bond_special.rst b/doc/src/bond_special.rst index bd93bb644c..d2423c9e23 100644 --- a/doc/src/bond_special.rst +++ b/doc/src/bond_special.rst @@ -1,7 +1,7 @@ .. index:: bond_style special bond_style special command -================================= +========================== Syntax """""" diff --git a/doc/src/bond_table.rst b/doc/src/bond_table.rst index 9f8ebacef0..fedb50355d 100644 --- a/doc/src/bond_table.rst +++ b/doc/src/bond_table.rst @@ -1,10 +1,10 @@ .. index:: bond_style table +.. index:: bond_style table/omp bond_style table command ======================== -bond_style table/omp command -============================ +Accelerator Variants: *table/omp* Syntax """""" diff --git a/doc/src/compute_cluster_atom.rst b/doc/src/compute_cluster_atom.rst index 77149306dc..ab47aed9b3 100644 --- a/doc/src/compute_cluster_atom.rst +++ b/doc/src/compute_cluster_atom.rst @@ -1,4 +1,6 @@ .. index:: compute cluster/atom +.. index:: compute fragment/atom +.. index:: compute aggregate/atom compute cluster/atom command ============================ diff --git a/doc/src/compute_coord_atom.rst b/doc/src/compute_coord_atom.rst index cbf879b8bd..f3c6f818af 100644 --- a/doc/src/compute_coord_atom.rst +++ b/doc/src/compute_coord_atom.rst @@ -1,10 +1,10 @@ .. index:: compute coord/atom +.. index:: compute coord/atom/kk compute coord/atom command ========================== -compute coord/atom/kk command -=================================== +Accelerator Variants: *coord/atom/kk* Syntax """""" diff --git a/doc/src/compute_mesont.rst b/doc/src/compute_mesont.rst index bf0ade16c1..44d6054e22 100644 --- a/doc/src/compute_mesont.rst +++ b/doc/src/compute_mesont.rst @@ -1,7 +1,7 @@ .. index:: compute mesont compute mesont command -========================== +====================== Syntax """""" diff --git a/doc/src/compute_orientorder_atom.rst b/doc/src/compute_orientorder_atom.rst index c8ab4d7b9b..2a36fb4cc0 100644 --- a/doc/src/compute_orientorder_atom.rst +++ b/doc/src/compute_orientorder_atom.rst @@ -1,10 +1,10 @@ .. index:: compute orientorder/atom +.. index:: compute orientorder/atom/kk compute orientorder/atom command ================================ -compute orientorder/atom/kk command -=================================== +Accelerator Variants: *orientorder/atom/kk* Syntax """""" diff --git a/doc/src/compute_reduce.rst b/doc/src/compute_reduce.rst index bf7d0dc28c..c7815305c0 100644 --- a/doc/src/compute_reduce.rst +++ b/doc/src/compute_reduce.rst @@ -1,4 +1,5 @@ .. index:: compute reduce +.. index:: compute reduce/region compute reduce command ====================== diff --git a/doc/src/compute_smd_ulsph_effm.rst b/doc/src/compute_smd_ulsph_effm.rst index e6d6b772a0..ff12f9cdac 100644 --- a/doc/src/compute_smd_ulsph_effm.rst +++ b/doc/src/compute_smd_ulsph_effm.rst @@ -1,7 +1,7 @@ .. index:: compute smd/ulsph/effm compute smd/ulsph/effm command -================================ +============================== Syntax """""" diff --git a/doc/src/compute_sna_atom.rst b/doc/src/compute_sna_atom.rst index 7e74a1bd61..08b06a32ec 100644 --- a/doc/src/compute_sna_atom.rst +++ b/doc/src/compute_sna_atom.rst @@ -1,4 +1,7 @@ .. index:: compute sna/atom +.. index:: compute snad/atom +.. index:: compute snav/atom +.. index:: compute snap compute sna/atom command ======================== diff --git a/doc/src/compute_sph_e_atom.rst b/doc/src/compute_sph_e_atom.rst index 08378c7c99..17591257f2 100644 --- a/doc/src/compute_sph_e_atom.rst +++ b/doc/src/compute_sph_e_atom.rst @@ -1,7 +1,7 @@ .. index:: compute sph/e/atom compute sph/e/atom command -=========================== +========================== Syntax """""" diff --git a/doc/src/compute_sph_rho_atom.rst b/doc/src/compute_sph_rho_atom.rst index 975ebf996d..c422a5ecbb 100644 --- a/doc/src/compute_sph_rho_atom.rst +++ b/doc/src/compute_sph_rho_atom.rst @@ -1,7 +1,7 @@ .. index:: compute sph/rho/atom compute sph/rho/atom command -============================= +============================ Syntax """""" diff --git a/doc/src/compute_sph_t_atom.rst b/doc/src/compute_sph_t_atom.rst index 2f8ad12f45..922adfff58 100644 --- a/doc/src/compute_sph_t_atom.rst +++ b/doc/src/compute_sph_t_atom.rst @@ -1,7 +1,7 @@ .. index:: compute sph/t/atom compute sph/t/atom command -=========================== +========================== Syntax """""" diff --git a/doc/src/compute_stress_atom.rst b/doc/src/compute_stress_atom.rst index 2bdab03bda..16afd49548 100644 --- a/doc/src/compute_stress_atom.rst +++ b/doc/src/compute_stress_atom.rst @@ -1,4 +1,5 @@ .. index:: compute stress/atom +.. index:: compute centroid/stress/atom compute stress/atom command =========================== diff --git a/doc/src/compute_stress_mop.rst b/doc/src/compute_stress_mop.rst index 4d0d21cb87..f164a33c26 100644 --- a/doc/src/compute_stress_mop.rst +++ b/doc/src/compute_stress_mop.rst @@ -1,4 +1,5 @@ .. index:: compute stress/mop +.. index:: compute stress/mop/profile compute stress/mop command ========================== diff --git a/doc/src/compute_tally.rst b/doc/src/compute_tally.rst index 281425763a..6487618516 100644 --- a/doc/src/compute_tally.rst +++ b/doc/src/compute_tally.rst @@ -1,4 +1,8 @@ .. index:: compute force/tally +.. index:: compute heat/flux/tally +.. index:: compute pe/tally +.. index:: compute pe/mol/tally +.. index:: compute stress/tally compute force/tally command =========================== diff --git a/doc/src/compute_temp.rst b/doc/src/compute_temp.rst index ac11aa155c..a82046367e 100644 --- a/doc/src/compute_temp.rst +++ b/doc/src/compute_temp.rst @@ -1,10 +1,10 @@ .. index:: compute temp +.. index:: compute temp/kk compute temp command ==================== -compute temp/kk command -======================= +Accelerator Variants: *temp/kk* Syntax """""" diff --git a/doc/src/dihedral_charmm.rst b/doc/src/dihedral_charmm.rst index bbaaaf2dd4..9588cf8272 100644 --- a/doc/src/dihedral_charmm.rst +++ b/doc/src/dihedral_charmm.rst @@ -1,16 +1,13 @@ .. index:: dihedral_style charmm +.. index:: dihedral_style charmm/intel +.. index:: dihedral_style charmm/kk +.. index:: dihedral_style charmm/omp +.. index:: dihedral_style charmmfsw dihedral_style charmm command ============================= -dihedral_style charmm/intel command -=================================== - -dihedral_style charmm/kk command -================================ - -dihedral_style charmm/omp command -================================= +Accelerator Variants: *charmm/intel*, *charmm/kk*, *charmm/omp* dihedral_style charmmfsw command ================================ diff --git a/doc/src/dihedral_class2.rst b/doc/src/dihedral_class2.rst index 907102a4f6..a98cf6b041 100644 --- a/doc/src/dihedral_class2.rst +++ b/doc/src/dihedral_class2.rst @@ -1,13 +1,11 @@ .. index:: dihedral_style class2 +.. index:: dihedral_style class2/omp +.. index:: dihedral_style class2/kk dihedral_style class2 command ============================= -dihedral_style class2/omp command -================================= - -dihedral_style class2/kk command -================================ +Accelerator Variants: *class2/omp*, *class2/kk* Syntax """""" diff --git a/doc/src/dihedral_cosine_shift_exp.rst b/doc/src/dihedral_cosine_shift_exp.rst index 9648bc5387..1f0195df83 100644 --- a/doc/src/dihedral_cosine_shift_exp.rst +++ b/doc/src/dihedral_cosine_shift_exp.rst @@ -1,10 +1,10 @@ .. index:: dihedral_style cosine/shift/exp +.. index:: dihedral_style cosine/shift/exp/omp dihedral_style cosine/shift/exp command ======================================= -dihedral_style cosine/shift/exp/omp command -=========================================== +Accelerator Variants: *cosine/shift/exp/omp* Syntax """""" diff --git a/doc/src/dihedral_fourier.rst b/doc/src/dihedral_fourier.rst index d795488107..f55011c902 100644 --- a/doc/src/dihedral_fourier.rst +++ b/doc/src/dihedral_fourier.rst @@ -1,13 +1,11 @@ .. index:: dihedral_style fourier +.. index:: dihedral_style fourier/intel +.. index:: dihedral_style fourier/omp dihedral_style fourier command ============================== -dihedral_style fourier/intel command -==================================== - -dihedral_style fourier/omp command -================================== +Accelerator Variants: *fourier/intel*, *fourier/omp* Syntax """""" diff --git a/doc/src/dihedral_harmonic.rst b/doc/src/dihedral_harmonic.rst index f6e9794d3e..0ee6339ea0 100644 --- a/doc/src/dihedral_harmonic.rst +++ b/doc/src/dihedral_harmonic.rst @@ -1,16 +1,12 @@ .. index:: dihedral_style harmonic +.. index:: dihedral_style harmonic/intel +.. index:: dihedral_style harmonic/kk +.. index:: dihedral_style harmonic/omp dihedral_style harmonic command =============================== -dihedral_style harmonic/intel command -===================================== - -dihedral_style harmonic/kk command -================================== - -dihedral_style harmonic/omp command -=================================== +Accelerator Variants: *harmonic/intel*, *harmonic/kk*, *harmonic/omp* Syntax """""" diff --git a/doc/src/dihedral_helix.rst b/doc/src/dihedral_helix.rst index 58738dd7a7..89258cff35 100644 --- a/doc/src/dihedral_helix.rst +++ b/doc/src/dihedral_helix.rst @@ -1,10 +1,10 @@ .. index:: dihedral_style helix +.. index:: dihedral_style helix/omp dihedral_style helix command ============================ -dihedral_style helix/omp command -================================ +Accelerator Variants: *helix/omp* Syntax """""" diff --git a/doc/src/dihedral_multi_harmonic.rst b/doc/src/dihedral_multi_harmonic.rst index c13d45863f..176d3815dc 100644 --- a/doc/src/dihedral_multi_harmonic.rst +++ b/doc/src/dihedral_multi_harmonic.rst @@ -1,10 +1,10 @@ .. index:: dihedral_style multi/harmonic +.. index:: dihedral_style multi/harmonic/omp dihedral_style multi/harmonic command ===================================== -dihedral_style multi/harmonic/omp command -========================================= +Accelerator Variants: *multi/harmonic/omp* Syntax """""" diff --git a/doc/src/dihedral_nharmonic.rst b/doc/src/dihedral_nharmonic.rst index e2223382e2..2411903126 100644 --- a/doc/src/dihedral_nharmonic.rst +++ b/doc/src/dihedral_nharmonic.rst @@ -1,10 +1,10 @@ .. index:: dihedral_style nharmonic +.. index:: dihedral_style nharmonic/omp dihedral_style nharmonic command -================================= +================================ -dihedral_style nharmonic/omp command -===================================== +Accelerator Variants: *nharmonic/omp* Syntax """""" diff --git a/doc/src/dihedral_opls.rst b/doc/src/dihedral_opls.rst index a2be0b5b2d..36b1897fce 100644 --- a/doc/src/dihedral_opls.rst +++ b/doc/src/dihedral_opls.rst @@ -1,16 +1,12 @@ .. index:: dihedral_style opls +.. index:: dihedral_style opls/intel +.. index:: dihedral_style opls/kk +.. index:: dihedral_style opls/omp dihedral_style opls command =========================== -dihedral_style opls/intel command -================================= - -dihedral_style opls/kk command -============================== - -dihedral_style opls/omp command -=============================== +Accelerator Variants: *opls/intel*, *opls/kk*, *opls/omp* Syntax """""" diff --git a/doc/src/dihedral_quadratic.rst b/doc/src/dihedral_quadratic.rst index 9c4a707562..dbe680fc82 100644 --- a/doc/src/dihedral_quadratic.rst +++ b/doc/src/dihedral_quadratic.rst @@ -1,10 +1,10 @@ .. index:: dihedral_style quadratic +.. index:: dihedral_style quadratic/omp dihedral_style quadratic command ================================ -dihedral_style quadratic/omp command -==================================== +Accelerator Variants: *quadratic/omp* Syntax """""" diff --git a/doc/src/dihedral_table.rst b/doc/src/dihedral_table.rst index 9ed7249572..ff3e61baee 100644 --- a/doc/src/dihedral_table.rst +++ b/doc/src/dihedral_table.rst @@ -1,10 +1,10 @@ .. index:: dihedral_style table +.. index:: dihedral_style table/omp dihedral_style table command ============================ -dihedral_style table/omp command -================================ +Accelerator Variants: *table/omp* Syntax """""" diff --git a/doc/src/dihedral_zero.rst b/doc/src/dihedral_zero.rst index 3df68edfd5..0f481f917d 100644 --- a/doc/src/dihedral_zero.rst +++ b/doc/src/dihedral_zero.rst @@ -1,7 +1,7 @@ .. index:: dihedral_style zero dihedral_style zero command -============================ +=========================== Syntax """""" diff --git a/doc/src/fix_ave_histo.rst b/doc/src/fix_ave_histo.rst index 7c4ef88fd6..d50112ac48 100644 --- a/doc/src/fix_ave_histo.rst +++ b/doc/src/fix_ave_histo.rst @@ -1,4 +1,5 @@ .. index:: fix ave/histo +.. index:: fix ave/histo/weight fix ave/histo command ===================== diff --git a/doc/src/fix_bond_create.rst b/doc/src/fix_bond_create.rst index d0c7fb985c..34f0d19f8d 100644 --- a/doc/src/fix_bond_create.rst +++ b/doc/src/fix_bond_create.rst @@ -1,4 +1,5 @@ .. index:: fix bond/create +.. index:: fix bond/create/angle fix bond/create command ======================= diff --git a/doc/src/fix_deform.rst b/doc/src/fix_deform.rst index 70b15f0d79..999a88c4e7 100644 --- a/doc/src/fix_deform.rst +++ b/doc/src/fix_deform.rst @@ -1,10 +1,10 @@ .. index:: fix deform +.. index:: fix deform/kk fix deform command ================== -fix deform/kk command -===================== +Accelerator Variants: *deform/kk* Syntax """""" diff --git a/doc/src/fix_dpd_energy.rst b/doc/src/fix_dpd_energy.rst index 6d510f1825..732f99b516 100644 --- a/doc/src/fix_dpd_energy.rst +++ b/doc/src/fix_dpd_energy.rst @@ -1,10 +1,10 @@ .. index:: fix dpd/energy +.. index:: fix dpd/energy/kk fix dpd/energy command ====================== -fix dpd/energy/kk command -========================= +Accelerator Variants: *dpd/energy/kk* Syntax """""" diff --git a/doc/src/fix_dpd_source.rst b/doc/src/fix_dpd_source.rst index 4373645c84..29bbc92f78 100644 --- a/doc/src/fix_dpd_source.rst +++ b/doc/src/fix_dpd_source.rst @@ -1,4 +1,5 @@ .. index:: fix edpd/source +.. index:: fix tdpd/source fix edpd/source command ======================= diff --git a/doc/src/fix_drude_transform.rst b/doc/src/fix_drude_transform.rst index bda2d25b1f..792b041576 100644 --- a/doc/src/fix_drude_transform.rst +++ b/doc/src/fix_drude_transform.rst @@ -1,4 +1,5 @@ .. index:: fix drude/transform/direct +.. index:: fix drude/transform/inverse fix drude/transform/direct command ================================== diff --git a/doc/src/fix_enforce2d.rst b/doc/src/fix_enforce2d.rst index e92011cb11..7c6ef75089 100644 --- a/doc/src/fix_enforce2d.rst +++ b/doc/src/fix_enforce2d.rst @@ -1,10 +1,10 @@ .. index:: fix enforce2d +.. index:: fix enforce2d/kk fix enforce2d command ===================== -fix enforce2d/kk command -======================== +Accelerator Variants: *enforce2d/kk* Syntax """""" diff --git a/doc/src/fix_eos_table_rx.rst b/doc/src/fix_eos_table_rx.rst index bd13398e0a..56bde44d98 100644 --- a/doc/src/fix_eos_table_rx.rst +++ b/doc/src/fix_eos_table_rx.rst @@ -1,10 +1,10 @@ .. index:: fix eos/table/rx +.. index:: fix eos/table/rx/kk fix eos/table/rx command ======================== -fix eos/table/rx/kk command -=========================== +Accelerator Variants: *eos/table/rx/kk* Syntax """""" diff --git a/doc/src/fix_freeze.rst b/doc/src/fix_freeze.rst index f81954ff5d..a7370c7f44 100644 --- a/doc/src/fix_freeze.rst +++ b/doc/src/fix_freeze.rst @@ -1,10 +1,10 @@ .. index:: fix freeze +.. index:: fix freeze/kk fix freeze command ================== -fix freeze/kk command -===================== +Accelerator Variants: *freeze/kk* Syntax """""" diff --git a/doc/src/fix_gravity.rst b/doc/src/fix_gravity.rst index 5f06f6d22a..a163eb4ab2 100644 --- a/doc/src/fix_gravity.rst +++ b/doc/src/fix_gravity.rst @@ -1,13 +1,11 @@ .. index:: fix gravity +.. index:: fix gravity/omp +.. index:: fix gravity/kk fix gravity command =================== -fix gravity/omp command -======================= - -fix gravity/kk command -====================== +Accelerator Variants: *gravity/omp*, *gravity/kk* Syntax """""" diff --git a/doc/src/fix_langevin.rst b/doc/src/fix_langevin.rst index 80f4964242..e31434247f 100644 --- a/doc/src/fix_langevin.rst +++ b/doc/src/fix_langevin.rst @@ -1,10 +1,10 @@ .. index:: fix langevin +.. index:: fix langevin/kk fix langevin command ==================== -fix langevin/kk command -======================= +Accelerator Variants: *langevin/kk* Syntax """""" diff --git a/doc/src/fix_momentum.rst b/doc/src/fix_momentum.rst index ca6e19005e..393a6a16cd 100644 --- a/doc/src/fix_momentum.rst +++ b/doc/src/fix_momentum.rst @@ -1,10 +1,11 @@ .. index:: fix momentum +.. index:: fix momentum/kk +.. index:: fix momentum/chunk fix momentum command ==================== -fix momentum/kk command -======================= +Accelerator Variants: *momentum/kk* fix momentum/chunk command ========================== diff --git a/doc/src/fix_mvv_dpd.rst b/doc/src/fix_mvv_dpd.rst index c7e9b64c96..d0df1bd0f9 100644 --- a/doc/src/fix_mvv_dpd.rst +++ b/doc/src/fix_mvv_dpd.rst @@ -1,4 +1,6 @@ .. index:: fix mvv/dpd +.. index:: fix mvv/edpd +.. index:: fix mvv/tdpd fix mvv/dpd command =================== diff --git a/doc/src/fix_nh.rst b/doc/src/fix_nh.rst index 64a3c3b061..84b497dc3f 100644 --- a/doc/src/fix_nh.rst +++ b/doc/src/fix_nh.rst @@ -1,37 +1,29 @@ .. index:: fix nvt +.. index:: fix nvt/intel +.. index:: fix nvt/kk +.. index:: fix nvt/omp +.. index:: fix npt +.. index:: fix npt/intel +.. index:: fix npt/kk +.. index:: fix npt/omp +.. index:: fix nph +.. index:: fix nph/kk +.. index:: fix nph/omp fix nvt command =============== -fix nvt/intel command -===================== - -fix nvt/kk command -================== - -fix nvt/omp command -=================== +Accelerator Variants: *nvt/intel*, *nvt/kk*, *nvt/omp* fix npt command =============== -fix npt/intel command -===================== - -fix npt/kk command -================== - -fix npt/omp command -=================== +Accelerator Variants: *npt/intel*, *npt/kk*, *npt/omp* fix nph command =============== -fix nph/kk command -================== - -fix nph/omp command -=================== +Accelerator Variants: *nph/kk*, *nph/omp* Syntax """""" diff --git a/doc/src/fix_nh_eff.rst b/doc/src/fix_nh_eff.rst index 4d4d536ac2..3e54ed9765 100644 --- a/doc/src/fix_nh_eff.rst +++ b/doc/src/fix_nh_eff.rst @@ -1,4 +1,6 @@ .. index:: fix nvt/eff +.. index:: fix npt/eff +.. index:: fix nph/eff fix nvt/eff command =================== diff --git a/doc/src/fix_nh_uef.rst b/doc/src/fix_nh_uef.rst index 272f84d520..1c1e7a11d2 100644 --- a/doc/src/fix_nh_uef.rst +++ b/doc/src/fix_nh_uef.rst @@ -1,4 +1,5 @@ .. index:: fix nvt/uef +.. index:: fix npt/uef fix nvt/uef command =================== diff --git a/doc/src/fix_nph_asphere.rst b/doc/src/fix_nph_asphere.rst index 2e5dd16c8f..da0510492e 100644 --- a/doc/src/fix_nph_asphere.rst +++ b/doc/src/fix_nph_asphere.rst @@ -1,10 +1,10 @@ .. index:: fix nph/asphere +.. index:: fix nph/asphere/omp fix nph/asphere command ======================= -fix nph/asphere/omp command -=========================== +Accelerator Variants: *nph/asphere/omp* Syntax """""" diff --git a/doc/src/fix_nph_sphere.rst b/doc/src/fix_nph_sphere.rst index efa6ca38b5..4b76f7252f 100644 --- a/doc/src/fix_nph_sphere.rst +++ b/doc/src/fix_nph_sphere.rst @@ -1,10 +1,10 @@ .. index:: fix nph/sphere +.. index:: fix nph/sphere/omp fix nph/sphere command ====================== -fix nph/sphere/omp command -========================== +Accelerator Variants: *nph/sphere/omp* Syntax """""" diff --git a/doc/src/fix_nphug.rst b/doc/src/fix_nphug.rst index c46e98fe3e..d55f435d43 100644 --- a/doc/src/fix_nphug.rst +++ b/doc/src/fix_nphug.rst @@ -1,10 +1,10 @@ .. index:: fix nphug +.. index:: fix nphug/omp fix nphug command ================= -fix nphug/omp command -===================== +Accelerator Variants: *nphug/omp* Syntax """""" diff --git a/doc/src/fix_npt_asphere.rst b/doc/src/fix_npt_asphere.rst index 5537365359..de2289a068 100644 --- a/doc/src/fix_npt_asphere.rst +++ b/doc/src/fix_npt_asphere.rst @@ -1,10 +1,10 @@ .. index:: fix npt/asphere +.. index:: fix npt/asphere/omp fix npt/asphere command ======================= -fix npt/asphere/omp command -=========================== +Accelerator Variants: *npt/asphere/omp* Syntax """""" diff --git a/doc/src/fix_npt_sphere.rst b/doc/src/fix_npt_sphere.rst index 4e8188ac0c..7363375ff3 100644 --- a/doc/src/fix_npt_sphere.rst +++ b/doc/src/fix_npt_sphere.rst @@ -1,10 +1,10 @@ .. index:: fix npt/sphere +.. index:: fix npt/sphere/omp fix npt/sphere command ====================== -fix npt/sphere/omp command -========================== +Accelerator Variants: *npt/sphere/omp* Syntax """""" diff --git a/doc/src/fix_numdiff.rst b/doc/src/fix_numdiff.rst index 0c4f731ea0..22c1c59748 100644 --- a/doc/src/fix_numdiff.rst +++ b/doc/src/fix_numdiff.rst @@ -1,7 +1,7 @@ .. index:: fix numdiff fix numdiff command -==================== +=================== Syntax """""" diff --git a/doc/src/fix_nve.rst b/doc/src/fix_nve.rst index 0026d38e8c..71f8ec300f 100644 --- a/doc/src/fix_nve.rst +++ b/doc/src/fix_nve.rst @@ -1,16 +1,12 @@ .. index:: fix nve +.. index:: fix nve/intel +.. index:: fix nve/kk +.. index:: fix nve/omp fix nve command =============== -fix nve/intel command -===================== - -fix nve/kk command -================== - -fix nve/omp command -=================== +Accelerator Variants: *nve/intel*, *nve/kk*, *nve/omp* Syntax """""" diff --git a/doc/src/fix_nve_asphere.rst b/doc/src/fix_nve_asphere.rst index f1441fdd3c..af80460b32 100644 --- a/doc/src/fix_nve_asphere.rst +++ b/doc/src/fix_nve_asphere.rst @@ -1,10 +1,10 @@ .. index:: fix nve/asphere +.. index:: fix nve/asphere/intel fix nve/asphere command ======================= -fix nve/asphere/intel command -============================= +Accelerator Variants: *nve/asphere/intel* Syntax """""" diff --git a/doc/src/fix_nve_sphere.rst b/doc/src/fix_nve_sphere.rst index 59d951782a..0230255b42 100644 --- a/doc/src/fix_nve_sphere.rst +++ b/doc/src/fix_nve_sphere.rst @@ -1,13 +1,11 @@ .. index:: fix nve/sphere +.. index:: fix nve/sphere/omp +.. index:: fix nve/sphere/kk fix nve/sphere command ====================== -fix nve/sphere/omp command -========================== - -fix nve/sphere/kk command -========================= +Accelerator Variants: *nve/sphere/omp*, *nve/sphere/kk* Syntax """""" diff --git a/doc/src/fix_nvt_asphere.rst b/doc/src/fix_nvt_asphere.rst index a08dae765c..bb4139d95f 100644 --- a/doc/src/fix_nvt_asphere.rst +++ b/doc/src/fix_nvt_asphere.rst @@ -1,10 +1,10 @@ .. index:: fix nvt/asphere +.. index:: fix nvt/asphere/omp fix nvt/asphere command ======================= -fix nvt/asphere/omp command -=========================== +Accelerator Variants: *nvt/asphere/omp* Syntax """""" diff --git a/doc/src/fix_nvt_sllod.rst b/doc/src/fix_nvt_sllod.rst index b5051b8692..ff9a4f0d12 100644 --- a/doc/src/fix_nvt_sllod.rst +++ b/doc/src/fix_nvt_sllod.rst @@ -1,13 +1,11 @@ .. index:: fix nvt/sllod +.. index:: fix nvt/sllod/intel +.. index:: fix nvt/sllod/omp fix nvt/sllod command ===================== -fix nvt/sllod/intel command -=========================== - -fix nvt/sllod/omp command -========================= +Accelerator Variants: *nvt/sllod/intel*, *nvt/sllod/omp* Syntax """""" diff --git a/doc/src/fix_nvt_sphere.rst b/doc/src/fix_nvt_sphere.rst index dd4cf9cb3f..8226328cea 100644 --- a/doc/src/fix_nvt_sphere.rst +++ b/doc/src/fix_nvt_sphere.rst @@ -1,10 +1,10 @@ .. index:: fix nvt/sphere +.. index:: fix nvt/sphere/omp fix nvt/sphere command ====================== -fix nvt/sphere/omp command -========================== +Accelerator Variants: *nvt/sphere/omp* Syntax """""" diff --git a/doc/src/fix_orient.rst b/doc/src/fix_orient.rst index 51edbd48ad..31aa6074d1 100644 --- a/doc/src/fix_orient.rst +++ b/doc/src/fix_orient.rst @@ -1,4 +1,5 @@ .. index:: fix orient/fcc +.. index:: fix orient/bcc fix orient/fcc command ====================== diff --git a/doc/src/fix_orient_eco.rst b/doc/src/fix_orient_eco.rst index bdfab21c9d..58ff38268f 100644 --- a/doc/src/fix_orient_eco.rst +++ b/doc/src/fix_orient_eco.rst @@ -1,4 +1,4 @@ -.. index:: fix orient/eco +.. index:: fix orient/eco fix orient/eco command ====================== diff --git a/doc/src/fix_property_atom.rst b/doc/src/fix_property_atom.rst index eaf246c1a3..7e322777aa 100644 --- a/doc/src/fix_property_atom.rst +++ b/doc/src/fix_property_atom.rst @@ -1,10 +1,10 @@ .. index:: fix property/atom +.. index:: fix property/atom/kk fix property/atom command ========================= -fix property/atom/kk command -============================ +Accelerator Variants: *property/atom/kk* Syntax """""" diff --git a/doc/src/fix_qeq.rst b/doc/src/fix_qeq.rst index f656049e73..56fde059e8 100644 --- a/doc/src/fix_qeq.rst +++ b/doc/src/fix_qeq.rst @@ -1,4 +1,8 @@ .. index:: fix qeq/point +.. index:: fix qeq/shielded +.. index:: fix qeq/slater +.. index:: fix qeq/dynamic +.. index:: fix qeq/fire fix qeq/point command ===================== diff --git a/doc/src/fix_qeq_comb.rst b/doc/src/fix_qeq_comb.rst index f70ecb1dd5..74a97720dc 100644 --- a/doc/src/fix_qeq_comb.rst +++ b/doc/src/fix_qeq_comb.rst @@ -1,10 +1,10 @@ .. index:: fix qeq/comb +.. index:: fix qeq/comb/omp fix qeq/comb command ==================== -fix qeq/comb/omp command -======================== +Accelerator Variants: *qeq/comb/omp* Syntax """""" diff --git a/doc/src/fix_qeq_reax.rst b/doc/src/fix_qeq_reax.rst index 0fd5e78578..47dca86401 100644 --- a/doc/src/fix_qeq_reax.rst +++ b/doc/src/fix_qeq_reax.rst @@ -1,13 +1,11 @@ .. index:: fix qeq/reax +.. index:: fix qeq/reax/kk +.. index:: fix qeq/reax/omp fix qeq/reax command ==================== -fix qeq/reax/kk command -======================= - -fix qeq/reax/omp command -======================== +Accelerator Variants: *qeq/reax/kk*, *qeq/reax/omp* Syntax """""" diff --git a/doc/src/fix_reaxc_bonds.rst b/doc/src/fix_reaxc_bonds.rst index 52f0581929..2d0d2d18db 100644 --- a/doc/src/fix_reaxc_bonds.rst +++ b/doc/src/fix_reaxc_bonds.rst @@ -1,10 +1,10 @@ .. index:: fix reax/c/bonds +.. index:: fix reax/c/bonds/kk fix reax/c/bonds command ======================== -fix reax/c/bonds/kk command -=========================== +Accelerator Variants: *reax/c/bonds/kk* Syntax """""" diff --git a/doc/src/fix_reaxc_species.rst b/doc/src/fix_reaxc_species.rst index 275086b52b..9935ecaa3a 100644 --- a/doc/src/fix_reaxc_species.rst +++ b/doc/src/fix_reaxc_species.rst @@ -1,10 +1,10 @@ .. index:: fix reax/c/species +.. index:: fix reax/c/species/kk fix reax/c/species command ========================== -fix reax/c/species/kk command -============================= +Accelerator Variants: *reax/c/species/kk* Syntax """""" diff --git a/doc/src/fix_rigid.rst b/doc/src/fix_rigid.rst index a143817303..efadc5dd13 100644 --- a/doc/src/fix_rigid.rst +++ b/doc/src/fix_rigid.rst @@ -1,40 +1,49 @@ .. index:: fix rigid +.. index:: fix rigid/omp +.. index:: fix rigid/nve +.. index:: fix rigid/nve/omp +.. index:: fix rigid/nvt +.. index:: fix rigid/nvt/omp +.. index:: fix rigid/npt +.. index:: fix rigid/npt/omp +.. index:: fix rigid/nph +.. index:: fix rigid/nph/omp +.. index:: fix rigid/small +.. index:: fix rigid/small/omp +.. index:: fix rigid/nve/small +.. index:: fix rigid/nvt/small +.. index:: fix rigid/npt/small +.. index:: fix rigid/nph/small fix rigid command ================= -fix rigid/omp command -===================== +Accelerator Variants: *rigid/omp* fix rigid/nve command ===================== -fix rigid/nve/omp command -========================= +Accelerator Variants: *rigid/nve/omp* fix rigid/nvt command ===================== -fix rigid/nvt/omp command -========================= +Accelerator Variants: *rigid/nvt/omp* fix rigid/npt command ===================== -fix rigid/npt/omp command -========================= +Accelerator Variants: *rigid/npt/omp* fix rigid/nph command ===================== -fix rigid/nph/omp command -========================= +Accelerator Variants: *rigid/nph/omp* fix rigid/small command ======================= -fix rigid/small/omp command -=========================== +Accelerator Variants: *rigid/small/omp* fix rigid/nve/small command =========================== diff --git a/doc/src/fix_rx.rst b/doc/src/fix_rx.rst index 7a3a95f069..c1a1d0950c 100644 --- a/doc/src/fix_rx.rst +++ b/doc/src/fix_rx.rst @@ -1,10 +1,10 @@ .. index:: fix rx +.. index:: fix rx/kk fix rx command ============== -fix rx/kk command -================= +Accelerator Variants: *rx/kk* Syntax """""" diff --git a/doc/src/fix_setforce.rst b/doc/src/fix_setforce.rst index b417b369e5..406826e5b9 100644 --- a/doc/src/fix_setforce.rst +++ b/doc/src/fix_setforce.rst @@ -1,10 +1,11 @@ .. index:: fix setforce +.. index:: fix setforce/kk +.. index:: fix setforce/spin fix setforce command ==================== -fix setforce/kk command -======================= +Accelerator Variants: *setforce/kk* fix setforce/spin command ========================= diff --git a/doc/src/fix_shake.rst b/doc/src/fix_shake.rst index 5f720d86ea..eb7add7035 100644 --- a/doc/src/fix_shake.rst +++ b/doc/src/fix_shake.rst @@ -1,4 +1,5 @@ .. index:: fix shake +.. index:: fix rattle fix shake command ================= diff --git a/doc/src/fix_shardlow.rst b/doc/src/fix_shardlow.rst index 3c046dae74..f928044db7 100644 --- a/doc/src/fix_shardlow.rst +++ b/doc/src/fix_shardlow.rst @@ -1,10 +1,10 @@ .. index:: fix shardlow +.. index:: fix shardlow/kk fix shardlow command ==================== -fix shardlow/kk command -======================= +Accelerator Variants: *shardlow/kk* Syntax """""" diff --git a/doc/src/fix_smd_integrate_ulsph.rst b/doc/src/fix_smd_integrate_ulsph.rst index f7ba223965..5b4c117452 100644 --- a/doc/src/fix_smd_integrate_ulsph.rst +++ b/doc/src/fix_smd_integrate_ulsph.rst @@ -1,7 +1,7 @@ .. index:: fix smd/integrate_ulsph fix smd/integrate_ulsph command -================================ +=============================== Syntax """""" diff --git a/doc/src/fix_sph.rst b/doc/src/fix_sph.rst index 1b482e0252..5ba752debb 100644 --- a/doc/src/fix_sph.rst +++ b/doc/src/fix_sph.rst @@ -1,7 +1,7 @@ .. index:: fix sph fix sph command -================ +=============== Syntax """""" diff --git a/doc/src/fix_sph_stationary.rst b/doc/src/fix_sph_stationary.rst index 5fa3f1d04d..c86a30b542 100644 --- a/doc/src/fix_sph_stationary.rst +++ b/doc/src/fix_sph_stationary.rst @@ -1,7 +1,7 @@ .. index:: fix sph/stationary fix sph/stationary command -=========================== +========================== Syntax """""" diff --git a/doc/src/fix_temp_csvr.rst b/doc/src/fix_temp_csvr.rst index 10c92dc2f2..8faa6035cf 100644 --- a/doc/src/fix_temp_csvr.rst +++ b/doc/src/fix_temp_csvr.rst @@ -1,4 +1,5 @@ .. index:: fix temp/csvr +.. index:: fix temp/csld fix temp/csvr command ===================== diff --git a/doc/src/fix_ttm.rst b/doc/src/fix_ttm.rst index 97cb0cd05b..24bc6f297f 100644 --- a/doc/src/fix_ttm.rst +++ b/doc/src/fix_ttm.rst @@ -1,4 +1,5 @@ .. index:: fix ttm +.. index:: fix ttm/mod fix ttm command =============== diff --git a/doc/src/fix_wall.rst b/doc/src/fix_wall.rst index d4120ca625..39ff879138 100644 --- a/doc/src/fix_wall.rst +++ b/doc/src/fix_wall.rst @@ -1,10 +1,15 @@ .. index:: fix wall/lj93 +.. index:: fix wall/lj93/kk +.. index:: fix wall/lj126 +.. index:: fix wall/lj1043 +.. index:: fix wall/colloid +.. index:: fix wall/harmonic +.. index:: fix wall/morse fix wall/lj93 command ===================== -fix wall/lj93/kk command -======================== +Accelerator Variants: *wall/lj93/kk* fix wall/lj126 command ====================== diff --git a/doc/src/fix_wall_ees.rst b/doc/src/fix_wall_ees.rst index 79f96765f8..2bab8c6056 100644 --- a/doc/src/fix_wall_ees.rst +++ b/doc/src/fix_wall_ees.rst @@ -1,4 +1,5 @@ .. index:: fix wall/ees +.. index:: fix wall/region/ees fix wall/ees command ==================== diff --git a/doc/src/fix_wall_reflect.rst b/doc/src/fix_wall_reflect.rst index 44cde8f3d5..4f014cc628 100644 --- a/doc/src/fix_wall_reflect.rst +++ b/doc/src/fix_wall_reflect.rst @@ -1,10 +1,10 @@ .. index:: fix wall/reflect +.. index:: fix wall/reflect/kk fix wall/reflect command ======================== -fix wall/reflect/kk command -=========================== +Accelerator Variants: *wall/reflect/kk* Syntax """""" diff --git a/doc/src/improper_class2.rst b/doc/src/improper_class2.rst index eb6b8eab2c..a84e92b090 100644 --- a/doc/src/improper_class2.rst +++ b/doc/src/improper_class2.rst @@ -1,13 +1,11 @@ .. index:: improper_style class2 +.. index:: improper_style class2/omp +.. index:: improper_style class2/kk improper_style class2 command ============================= -improper_style class2/omp command -================================= - -improper_style class2/kk command -================================ +Accelerator Variants: *class2/omp*, *class2/kk* Syntax """""" diff --git a/doc/src/improper_cossq.rst b/doc/src/improper_cossq.rst index 70885acc28..a6281bc260 100644 --- a/doc/src/improper_cossq.rst +++ b/doc/src/improper_cossq.rst @@ -1,10 +1,10 @@ .. index:: improper_style cossq +.. index:: improper_style cossq/omp improper_style cossq command ============================ -improper_style cossq/omp command -================================ +Accelerator Variants: *cossq/omp* Syntax """""" diff --git a/doc/src/improper_cvff.rst b/doc/src/improper_cvff.rst index bde510c3f7..5bd7fdf911 100644 --- a/doc/src/improper_cvff.rst +++ b/doc/src/improper_cvff.rst @@ -1,13 +1,11 @@ .. index:: improper_style cvff +.. index:: improper_style cvff/intel +.. index:: improper_style cvff/omp improper_style cvff command =========================== -improper_style cvff/intel command -================================= - -improper_style cvff/omp command -=============================== +Accelerator Variants: *cvff/intel*, *cvff/omp* Syntax """""" diff --git a/doc/src/improper_fourier.rst b/doc/src/improper_fourier.rst index 04ce9ba994..84ea97509d 100644 --- a/doc/src/improper_fourier.rst +++ b/doc/src/improper_fourier.rst @@ -1,10 +1,10 @@ .. index:: improper_style fourier +.. index:: improper_style fourier/omp improper_style fourier command ============================== -improper_style fourier/omp command -================================== +Accelerator Variants: *fourier/omp* Syntax """""" diff --git a/doc/src/improper_harmonic.rst b/doc/src/improper_harmonic.rst index e1b78d21db..4f21e48fa9 100644 --- a/doc/src/improper_harmonic.rst +++ b/doc/src/improper_harmonic.rst @@ -1,16 +1,12 @@ .. index:: improper_style harmonic +.. index:: improper_style harmonic/intel +.. index:: improper_style harmonic/kk +.. index:: improper_style harmonic/omp improper_style harmonic command =============================== -improper_style harmonic/intel command -===================================== - -improper_style harmonic/kk command -================================== - -improper_style harmonic/omp command -=================================== +Accelerator Variants: *harmonic/intel*, *harmonic/kk*, *harmonic/omp* Syntax """""" diff --git a/doc/src/improper_ring.rst b/doc/src/improper_ring.rst index df319396e2..d67c999714 100644 --- a/doc/src/improper_ring.rst +++ b/doc/src/improper_ring.rst @@ -1,10 +1,10 @@ .. index:: improper_style ring +.. index:: improper_style ring/omp improper_style ring command =========================== -improper_style ring/omp command -=============================== +Accelerator Variants: *ring/omp* Syntax """""" diff --git a/doc/src/improper_umbrella.rst b/doc/src/improper_umbrella.rst index 10981248d9..5d4aa571e1 100644 --- a/doc/src/improper_umbrella.rst +++ b/doc/src/improper_umbrella.rst @@ -1,10 +1,10 @@ .. index:: improper_style umbrella +.. index:: improper_style umbrella/omp improper_style umbrella command =============================== -improper_style umbrella/omp command -=================================== +Accelerator Variants: *umbrella/omp* Syntax """""" diff --git a/doc/src/kspace_style.rst b/doc/src/kspace_style.rst index 5b45b00353..59f5b7f27c 100644 --- a/doc/src/kspace_style.rst +++ b/doc/src/kspace_style.rst @@ -1,4 +1,30 @@ -.. index:: kspace_style +.. index:: kspace_style ewald +.. index:: kspace_style ewald/dipole +.. index:: kspace_style ewald/dipole/spin +.. index:: kspace_style ewald/disp +.. index:: kspace_style ewald/omp +.. index:: kspace_style pppm +.. index:: kspace_style pppm/kk +.. index:: kspace_style pppm/omp +.. index:: kspace_style pppm/gpu +.. index:: kspace_style pppm/intel +.. index:: kspace_style pppm/cg +.. index:: kspace_style pppm/dipole +.. index:: kspace_style pppm/dipole/spin +.. index:: kspace_style pppm/disp +.. index:: kspace_style pppm/disp/omp +.. index:: kspace_style pppm/disp/tip4p +.. index:: kspace_style pppm/disp/tip4p/omp +.. index:: kspace_style pppm/disp/intel +.. index:: kspace_style pppm/cg/omp +.. index:: kspace_style pppm/stagger +.. index:: kspace_style pppm/tip4p +.. index:: kspace_style pppm/tip4p/omp +.. index:: kspace_style msm +.. index:: kspace_style msm/omp +.. index:: kspace_style msm/cg +.. index:: kspace_style msm/cg/omp +.. index:: kspace_style scafacos kspace_style command ==================== diff --git a/doc/src/pair_adp.rst b/doc/src/pair_adp.rst index 7017549925..5eec0004bf 100644 --- a/doc/src/pair_adp.rst +++ b/doc/src/pair_adp.rst @@ -1,10 +1,10 @@ .. index:: pair_style adp +.. index:: pair_style adp/omp pair_style adp command ====================== -pair_style adp/omp command -========================== +Accelerator Variants: *adp/omp* Syntax """""" diff --git a/doc/src/pair_agni.rst b/doc/src/pair_agni.rst index ee69f40d80..087c39e8f9 100644 --- a/doc/src/pair_agni.rst +++ b/doc/src/pair_agni.rst @@ -1,10 +1,10 @@ .. index:: pair_style agni +.. index:: pair_style agni/omp pair_style agni command -======================== +======================= -pair_style agni/omp command -============================ +Accelerator Variants: *agni/omp* Syntax """""" diff --git a/doc/src/pair_airebo.rst b/doc/src/pair_airebo.rst index f3be0e85de..d631d0a3d0 100644 --- a/doc/src/pair_airebo.rst +++ b/doc/src/pair_airebo.rst @@ -1,31 +1,27 @@ .. index:: pair_style airebo +.. index:: pair_style airebo/intel +.. index:: pair_style airebo/omp +.. index:: pair_style airebo/morse +.. index:: pair_style airebo/morse/intel +.. index:: pair_style airebo/morse/omp +.. index:: pair_style rebo +.. index:: pair_style rebo/intel +.. index:: pair_style rebo/omp pair_style airebo command ========================= -pair_style airebo/intel command -=============================== - -pair_style airebo/omp command -============================= +Accelerator Variants: *airebo/intel*, *airebo/omp* pair_style airebo/morse command =============================== -pair_style airebo/morse/intel command -===================================== - -pair_style airebo/morse/omp command -=================================== +Accelerator Variants: *airebo/morse/intel*, *airebo/morse/omp* pair_style rebo command ======================= -pair_style rebo/intel command -============================= - -pair_style rebo/omp command -=========================== +Accelerator Variants: *rebo/intel*, *rebo/omp* Syntax """""" diff --git a/doc/src/pair_beck.rst b/doc/src/pair_beck.rst index 0e63fe77ba..44bc317138 100644 --- a/doc/src/pair_beck.rst +++ b/doc/src/pair_beck.rst @@ -1,13 +1,11 @@ .. index:: pair_style beck +.. index:: pair_style beck/gpu +.. index:: pair_style beck/omp pair_style beck command ======================= -pair_style beck/gpu command -=========================== - -pair_style beck/omp command -=========================== +Accelerator Variants: *beck/gpu*, *beck/omp* Syntax """""" diff --git a/doc/src/pair_born.rst b/doc/src/pair_born.rst index 761b40b812..65be948f82 100644 --- a/doc/src/pair_born.rst +++ b/doc/src/pair_born.rst @@ -1,37 +1,35 @@ .. index:: pair_style born +.. index:: pair_style born/omp +.. index:: pair_style born/gpu +.. index:: pair_style born/coul/long +.. index:: pair_style born/coul/long/gpu +.. index:: pair_style born/coul/long/omp +.. index:: pair_style born/coul/msm +.. index:: pair_style born/coul/msm/omp +.. index:: pair_style born/coul/wolf +.. index:: pair_style born/coul/wolf/gpu +.. index:: pair_style born/coul/wolf/omp +.. index:: pair_style born/coul/dsf pair_style born command ======================= -pair_style born/omp command -=========================== - -pair_style born/gpu command -=========================== +Accelerator Variants: *born/omp*, *born/gpu* pair_style born/coul/long command ================================= -pair_style born/coul/long/gpu command -===================================== - -pair_style born/coul/long/omp command -===================================== +Accelerator Variants: *born/coul/long/gpu*, *born/coul/long/omp* pair_style born/coul/msm command ================================ -pair_style born/coul/msm/omp command -==================================== +Accelerator Variants: *born/coul/msm/omp* pair_style born/coul/wolf command ================================= -pair_style born/coul/wolf/gpu command -===================================== - -pair_style born/coul/wolf/omp command -===================================== +Accelerator Variants: *born/coul/wolf/gpu*, *born/coul/wolf/omp* pair_style born/coul/dsf command ================================ diff --git a/doc/src/pair_brownian.rst b/doc/src/pair_brownian.rst index ea311d603e..43c17c9087 100644 --- a/doc/src/pair_brownian.rst +++ b/doc/src/pair_brownian.rst @@ -1,16 +1,17 @@ .. index:: pair_style brownian +.. index:: pair_style brownian/omp +.. index:: pair_style brownian/poly +.. index:: pair_style brownian/poly/omp pair_style brownian command =========================== -pair_style brownian/omp command -================================ +Accelerator Variants: *brownian/omp* pair_style brownian/poly command ================================ -pair_style brownian/poly/omp command -==================================== +Accelerator Variants: *brownian/poly/omp* Syntax """""" diff --git a/doc/src/pair_buck.rst b/doc/src/pair_buck.rst index e8a1475ccb..5f255ece39 100644 --- a/doc/src/pair_buck.rst +++ b/doc/src/pair_buck.rst @@ -1,55 +1,40 @@ .. index:: pair_style buck +.. index:: pair_style buck/gpu +.. index:: pair_style buck/intel +.. index:: pair_style buck/kk +.. index:: pair_style buck/omp +.. index:: pair_style buck/coul/cut +.. index:: pair_style buck/coul/cut/gpu +.. index:: pair_style buck/coul/cut/intel +.. index:: pair_style buck/coul/cut/kk +.. index:: pair_style buck/coul/cut/omp +.. index:: pair_style buck/coul/long +.. index:: pair_style buck/coul/long/gpu +.. index:: pair_style buck/coul/long/intel +.. index:: pair_style buck/coul/long/kk +.. index:: pair_style buck/coul/long/omp +.. index:: pair_style buck/coul/msm +.. index:: pair_style buck/coul/msm/omp pair_style buck command -======================== +======================= -pair_style buck/gpu command -============================ - -pair_style buck/intel command -============================== - -pair_style buck/kk command -=========================== - -pair_style buck/omp command -============================ +Accelerator Variants: *buck/gpu*, *buck/intel*, *buck/kk*, *buck/omp* pair_style buck/coul/cut command -================================= +================================ -pair_style buck/coul/cut/gpu command -===================================== - -pair_style buck/coul/cut/intel command -======================================= - -pair_style buck/coul/cut/kk command -==================================== - -pair_style buck/coul/cut/omp command -===================================== +Accelerator Variants: *buck/coul/cut/gpu*, *buck/coul/cut/intel*, *buck/coul/cut/kk*, *buck/coul/cut/omp* pair_style buck/coul/long command -================================== - -pair_style buck/coul/long/gpu command -====================================== - -pair_style buck/coul/long/intel command -======================================== - -pair_style buck/coul/long/kk command -===================================== - -pair_style buck/coul/long/omp command -====================================== - -pair_style buck/coul/msm command ================================= -pair_style buck/coul/msm/omp command -===================================== +Accelerator Variants: *buck/coul/long/gpu*, *buck/coul/long/intel*, *buck/coul/long/kk*, *buck/coul/long/omp* + +pair_style buck/coul/msm command +================================ + +Accelerator Variants: *buck/coul/msm/omp* Syntax """""" diff --git a/doc/src/pair_buck6d_coul_gauss.rst b/doc/src/pair_buck6d_coul_gauss.rst index 7d3e5b9a22..5f96a93fee 100644 --- a/doc/src/pair_buck6d_coul_gauss.rst +++ b/doc/src/pair_buck6d_coul_gauss.rst @@ -1,4 +1,5 @@ .. index:: pair_style buck6d/coul/gauss/dsf +.. index:: pair_style buck6d/coul/gauss/long pair_style buck6d/coul/gauss/dsf command ======================================== diff --git a/doc/src/pair_buck_long.rst b/doc/src/pair_buck_long.rst index c0dd81d78f..1883cee637 100644 --- a/doc/src/pair_buck_long.rst +++ b/doc/src/pair_buck_long.rst @@ -1,10 +1,10 @@ .. index:: pair_style buck/long/coul/long +.. index:: pair_style buck/long/coul/long/omp pair_style buck/long/coul/long command -======================================= +====================================== -pair_style buck/long/coul/long/omp command -=========================================== +Accelerator Variants: *buck/long/coul/long/omp* Syntax """""" diff --git a/doc/src/pair_charmm.rst b/doc/src/pair_charmm.rst index 183311e34d..6d81266a35 100644 --- a/doc/src/pair_charmm.rst +++ b/doc/src/pair_charmm.rst @@ -1,55 +1,46 @@ .. index:: pair_style lj/charmm/coul/charmm +.. index:: pair_style lj/charmm/coul/charmm/intel +.. index:: pair_style lj/charmm/coul/charmm/kk +.. index:: pair_style lj/charmm/coul/charmm/omp +.. index:: pair_style lj/charmm/coul/charmm/implicit +.. index:: pair_style lj/charmm/coul/charmm/implicit/kk +.. index:: pair_style lj/charmm/coul/charmm/implicit/omp +.. index:: pair_style lj/charmm/coul/long +.. index:: pair_style lj/charmm/coul/long/gpu +.. index:: pair_style lj/charmm/coul/long/intel +.. index:: pair_style lj/charmm/coul/long/kk +.. index:: pair_style lj/charmm/coul/long/opt +.. index:: pair_style lj/charmm/coul/long/omp +.. index:: pair_style lj/charmm/coul/msm +.. index:: pair_style lj/charmm/coul/msm/omp +.. index:: pair_style lj/charmmfsw/coul/charmmfsh +.. index:: pair_style lj/charmmfsw/coul/long pair_style lj/charmm/coul/charmm command -========================================= +======================================== -pair_style lj/charmm/coul/charmm/intel command -=============================================== - -pair_style lj/charmm/coul/charmm/kk command -============================================ - -pair_style lj/charmm/coul/charmm/omp command -============================================= +Accelerator Variants: *lj/charmm/coul/charmm/intel*, *lj/charmm/coul/charmm/kk*, *lj/charmm/coul/charmm/omp* pair_style lj/charmm/coul/charmm/implicit command -================================================== +================================================= -pair_style lj/charmm/coul/charmm/implicit/kk command -===================================================== - -pair_style lj/charmm/coul/charmm/implicit/omp command -====================================================== +Accelerator Variants: *lj/charmm/coul/charmm/implicit/kk*, *lj/charmm/coul/charmm/implicit/omp* pair_style lj/charmm/coul/long command -======================================= - -pair_style lj/charmm/coul/long/gpu command -=========================================== - -pair_style lj/charmm/coul/long/intel command -============================================= - -pair_style lj/charmm/coul/long/kk command -========================================== - -pair_style lj/charmm/coul/long/opt command -=========================================== - -pair_style lj/charmm/coul/long/omp command -=========================================== - -pair_style lj/charmm/coul/msm command ====================================== -pair_style lj/charmm/coul/msm/omp command -========================================== +Accelerator Variants: *lj/charmm/coul/long/gpu*, *lj/charmm/coul/long/intel*, *lj/charmm/coul/long/kk*, *lj/charmm/coul/long/opt*, *lj/charmm/coul/long/omp* + +pair_style lj/charmm/coul/msm command +===================================== + +Accelerator Variants: *lj/charmm/coul/msm/omp* pair_style lj/charmmfsw/coul/charmmfsh command -=============================================== +============================================== pair_style lj/charmmfsw/coul/long command -========================================== +========================================= Syntax """""" diff --git a/doc/src/pair_class2.rst b/doc/src/pair_class2.rst index 66a696938f..cfa085cc28 100644 --- a/doc/src/pair_class2.rst +++ b/doc/src/pair_class2.rst @@ -1,37 +1,29 @@ .. index:: pair_style lj/class2 +.. index:: pair_style lj/class2/gpu +.. index:: pair_style lj/class2/kk +.. index:: pair_style lj/class2/omp +.. index:: pair_style lj/class2/coul/cut +.. index:: pair_style lj/class2/coul/cut/kk +.. index:: pair_style lj/class2/coul/cut/omp +.. index:: pair_style lj/class2/coul/long +.. index:: pair_style lj/class2/coul/long/gpu +.. index:: pair_style lj/class2/coul/long/kk +.. index:: pair_style lj/class2/coul/long/omp pair_style lj/class2 command ============================ -pair_style lj/class2/gpu command -================================ - -pair_style lj/class2/kk command -=============================== - -pair_style lj/class2/omp command -================================ +Accelerator Variants: *lj/class2/gpu*, *lj/class2/kk*, *lj/class2/omp* pair_style lj/class2/coul/cut command ===================================== -pair_style lj/class2/coul/cut/kk command -======================================== - -pair_style lj/class2/coul/cut/omp command -========================================= +Accelerator Variants: *lj/class2/coul/cut/kk*, *lj/class2/coul/cut/omp* pair_style lj/class2/coul/long command ====================================== -pair_style lj/class2/coul/long/gpu command -========================================== - -pair_style lj/class2/coul/long/kk command -========================================= - -pair_style lj/class2/coul/long/omp command -========================================== +Accelerator Variants: *lj/class2/coul/long/gpu*, *lj/class2/coul/long/kk*, *lj/class2/coul/long/omp* Syntax """""" diff --git a/doc/src/pair_colloid.rst b/doc/src/pair_colloid.rst index 4bb82e9615..040bea2487 100644 --- a/doc/src/pair_colloid.rst +++ b/doc/src/pair_colloid.rst @@ -1,13 +1,11 @@ .. index:: pair_style colloid +.. index:: pair_style colloid/gpu +.. index:: pair_style colloid/omp pair_style colloid command ========================== -pair_style colloid/gpu command -============================== - -pair_style colloid/omp command -============================== +Accelerator Variants: *colloid/gpu*, *colloid/omp* Syntax """""" diff --git a/doc/src/pair_comb.rst b/doc/src/pair_comb.rst index 441f982996..2e164d46fc 100644 --- a/doc/src/pair_comb.rst +++ b/doc/src/pair_comb.rst @@ -1,10 +1,11 @@ .. index:: pair_style comb +.. index:: pair_style comb/omp +.. index:: pair_style comb3 pair_style comb command ======================= -pair_style comb/omp command -=========================== +Accelerator Variants: *comb/omp* pair_style comb3 command ======================== diff --git a/doc/src/pair_coul.rst b/doc/src/pair_coul.rst index 4874bf044e..4def43647f 100644 --- a/doc/src/pair_coul.rst +++ b/doc/src/pair_coul.rst @@ -1,58 +1,54 @@ .. index:: pair_style coul/cut +.. index:: pair_style coul/cut/gpu +.. index:: pair_style coul/cut/kk +.. index:: pair_style coul/cut/omp +.. index:: pair_style coul/debye +.. index:: pair_style coul/debye/gpu +.. index:: pair_style coul/debye/kk +.. index:: pair_style coul/debye/omp +.. index:: pair_style coul/dsf +.. index:: pair_style coul/dsf/gpu +.. index:: pair_style coul/dsf/kk +.. index:: pair_style coul/dsf/omp +.. index:: pair_style coul/long +.. index:: pair_style coul/long/omp +.. index:: pair_style coul/long/kk +.. index:: pair_style coul/long/gpu +.. index:: pair_style coul/msm +.. index:: pair_style coul/msm/omp +.. index:: pair_style coul/streitz +.. index:: pair_style coul/wolf +.. index:: pair_style coul/wolf/kk +.. index:: pair_style coul/wolf/omp +.. index:: pair_style tip4p/cut +.. index:: pair_style tip4p/cut/omp +.. index:: pair_style tip4p/long +.. index:: pair_style tip4p/long/omp pair_style coul/cut command =========================== -pair_style coul/cut/gpu command -=============================== - -pair_style coul/cut/kk command -============================== - -pair_style coul/cut/omp command -=============================== +Accelerator Variants: *coul/cut/gpu*, *coul/cut/kk*, *coul/cut/omp* pair_style coul/debye command ============================= -pair_style coul/debye/gpu command -================================= - -pair_style coul/debye/kk command -================================ - -pair_style coul/debye/omp command -================================= +Accelerator Variants: *coul/debye/gpu*, *coul/debye/kk*, *coul/debye/omp* pair_style coul/dsf command =========================== -pair_style coul/dsf/gpu command -=============================== - -pair_style coul/dsf/kk command -============================== - -pair_style coul/dsf/omp command -=============================== +Accelerator Variants: *coul/dsf/gpu*, *coul/dsf/kk*, *coul/dsf/omp* pair_style coul/long command ============================ -pair_style coul/long/omp command -================================ - -pair_style coul/long/gpu command -================================ - -pair_style coul/long/kk command -=============================== +Accelerator Variants: *coul/long/omp*, *coul/long/kk*, *coul/long/gpu* pair_style coul/msm command =========================== -pair_style coul/msm/omp command -=============================== +Accelerator Variants: *coul/msm/omp* pair_style coul/streitz command =============================== @@ -60,23 +56,17 @@ pair_style coul/streitz command pair_style coul/wolf command ============================ -pair_style coul/wolf/kk command -=============================== - -pair_style coul/wolf/omp command -================================ +Accelerator Variants: *coul/wolf/kk*, *coul/wolf/omp* pair_style tip4p/cut command ============================ +Accelerator Variants: *tip4p/cut/omp* + pair_style tip4p/long command ============================= -pair_style tip4p/cut/omp command -================================ - -pair_style tip4p/long/omp command -================================= +Accelerator Variants: *tip4p/long/omp* Syntax """""" diff --git a/doc/src/pair_coul_diel.rst b/doc/src/pair_coul_diel.rst index e979ceef31..bcf0c48e4d 100644 --- a/doc/src/pair_coul_diel.rst +++ b/doc/src/pair_coul_diel.rst @@ -1,10 +1,10 @@ .. index:: pair_style coul/diel +.. index:: pair_style coul/diel/omp pair_style coul/diel command ============================ -pair_style coul/diel/omp command -================================ +Accelerator Variants: *coul/diel/omp* Syntax """""" diff --git a/doc/src/pair_coul_slater.rst b/doc/src/pair_coul_slater.rst index cc8e6f243c..a4d8b253b1 100644 --- a/doc/src/pair_coul_slater.rst +++ b/doc/src/pair_coul_slater.rst @@ -1,4 +1,9 @@ .. index:: pair_style coul/slater +.. index:: pair_style coul/slater/cut +.. index:: pair_style coul/slater/long + +pair_style coul/slater command +============================== pair_style coul/slater/cut command ================================== diff --git a/doc/src/pair_cs.rst b/doc/src/pair_cs.rst index 8efd49197d..f41d840216 100644 --- a/doc/src/pair_cs.rst +++ b/doc/src/pair_cs.rst @@ -1,37 +1,44 @@ .. index:: pair_style born/coul/dsf/cs +.. index:: pair_style born/coul/long/cs +.. index:: pair_style born/coul/long/cs/gpu +.. index:: pair_style born/coul/wolf/cs +.. index:: pair_style born/coul/wolf/cs/gpu +.. index:: pair_style buck/coul/long/cs +.. index:: pair_style coul/long/cs +.. index:: pair_style coul/long/cs/gpu +.. index:: pair_style coul/wolf/cs +.. index:: pair_style lj/cut/coul/long/cs +.. index:: pair_style lj/class2/coul/long/cs pair_style born/coul/dsf/cs command -==================================== +=================================== pair_style born/coul/long/cs command -===================================== - -pair_style born/coul/long/cs/gpu command -========================================= - -pair_style born/coul/wolf/cs command -===================================== - -pair_style born/coul/wolf/cs/gpu command -========================================= - -pair_style buck/coul/long/cs command -===================================== - -pair_style coul/long/cs command -================================ - -pair_style coul/long/cs/gpu command ==================================== +Accelerator Variants: *born/coul/long/cs/gpu* + +pair_style born/coul/wolf/cs command +==================================== + +Accelerator Variants: *born/coul/wolf/cs/gpu* + +pair_style buck/coul/long/cs command +==================================== + +pair_style coul/long/cs command +=============================== + +Accelerator Variants: *coul/long/cs/gpu* + pair_style coul/wolf/cs command -================================ +=============================== pair_style lj/cut/coul/long/cs command -======================================= +====================================== pair_style lj/class2/coul/long/cs command -========================================== +========================================= Syntax """""" diff --git a/doc/src/pair_dipole.rst b/doc/src/pair_dipole.rst index 21548be4f0..602c374d9f 100644 --- a/doc/src/pair_dipole.rst +++ b/doc/src/pair_dipole.rst @@ -1,28 +1,27 @@ .. index:: pair_style lj/cut/dipole/cut +.. index:: pair_style lj/cut/dipole/cut/gpu +.. index:: pair_style lj/cut/dipole/cut/omp +.. index:: pair_style lj/sf/dipole/sf +.. index:: pair_style lj/sf/dipole/sf/gpu +.. index:: pair_style lj/sf/dipole/sf/omp +.. index:: pair_style lj/cut/dipole/long +.. index:: pair_style lj/cut/dipole/long/gpu +.. index:: pair_style lj/long/dipole/long pair_style lj/cut/dipole/cut command ==================================== -pair_style lj/cut/dipole/cut/gpu command -======================================== - -pair_style lj/cut/dipole/cut/omp command -======================================== +Accelerator Variants: *lj/cut/dipole/cut/gpu*, *lj/cut/dipole/cut/omp* pair_style lj/sf/dipole/sf command ================================== -pair_style lj/sf/dipole/sf/gpu command -====================================== - -pair_style lj/sf/dipole/sf/omp command -====================================== +Accelerator Variants: *lj/sf/dipole/sf/gpu*, *lj/sf/dipole/sf/omp* pair_style lj/cut/dipole/long command ===================================== -pair_style lj/cut/dipole/long/gpu command -========================================= +Accelerator Variants: *lj/cut/dipole/long/gpu* pair_style lj/long/dipole/long command ====================================== diff --git a/doc/src/pair_dpd.rst b/doc/src/pair_dpd.rst index 94c9fa9bea..d1d84407c4 100644 --- a/doc/src/pair_dpd.rst +++ b/doc/src/pair_dpd.rst @@ -1,25 +1,20 @@ .. index:: pair_style dpd +.. index:: pair_style dpd/gpu +.. index:: pair_style dpd/intel +.. index:: pair_style dpd/omp +.. index:: pair_style dpd/tstat +.. index:: pair_style dpd/tstat/gpu +.. index:: pair_style dpd/tstat/omp pair_style dpd command ====================== -pair_style dpd/gpu command -========================== - -pair_style dpd/intel command -============================ - -pair_style dpd/omp command -========================== +Accelerator Variants: *dpd/gpu*, *dpd/intel*, *dpd/omp* pair_style dpd/tstat command ============================ -pair_style dpd/tstat/gpu command -================================ - -pair_style dpd/tstat/omp command -================================ +Accelerator Variants: *dpd/tstat/gpu*, *dpd/tstat/omp* Syntax """""" diff --git a/doc/src/pair_dpd_fdt.rst b/doc/src/pair_dpd_fdt.rst index e0659a7b78..bb810b0fe6 100644 --- a/doc/src/pair_dpd_fdt.rst +++ b/doc/src/pair_dpd_fdt.rst @@ -1,4 +1,6 @@ .. index:: pair_style dpd/fdt +.. index:: pair_style dpd/fdt/energy +.. index:: pair_style dpd/fdt/energy/kk pair_style dpd/fdt command ========================== @@ -6,8 +8,7 @@ pair_style dpd/fdt command pair_style dpd/fdt/energy command ================================= -pair_style dpd/fdt/energy/kk command -==================================== +Accelerator Variants: *dpd/fdt/energy/kk* Syntax """""" diff --git a/doc/src/pair_eam.rst b/doc/src/pair_eam.rst index c5f9b26435..690b387bad 100644 --- a/doc/src/pair_eam.rst +++ b/doc/src/pair_eam.rst @@ -1,40 +1,33 @@ .. index:: pair_style eam +.. index:: pair_style eam/gpu +.. index:: pair_style eam/intel +.. index:: pair_style eam/kk +.. index:: pair_style eam/omp +.. index:: pair_style eam/opt +.. index:: pair_style eam/alloy +.. index:: pair_style eam/alloy/gpu +.. index:: pair_style eam/alloy/intel +.. index:: pair_style eam/alloy/kk +.. index:: pair_style eam/alloy/omp +.. index:: pair_style eam/alloy/opt +.. index:: pair_style eam/cd +.. index:: pair_style eam/cd/old +.. index:: pair_style eam/fs +.. index:: pair_style eam/fs/gpu +.. index:: pair_style eam/fs/intel +.. index:: pair_style eam/fs/kk +.. index:: pair_style eam/fs/omp +.. index:: pair_style eam/fs/opt pair_style eam command ====================== -pair_style eam/gpu command -========================== - -pair_style eam/intel command -============================ - -pair_style eam/kk command -========================= - -pair_style eam/omp command -========================== - -pair_style eam/opt command -========================== +Accelerator Variants: *eam/gpu*, *eam/intel*, *eam/kk*, *eam/omp*, *eam/opt* pair_style eam/alloy command ============================ -pair_style eam/alloy/gpu command -================================ - -pair_style eam/alloy/intel command -================================== - -pair_style eam/alloy/kk command -=============================== - -pair_style eam/alloy/omp command -================================ - -pair_style eam/alloy/opt command -================================ +Accelerator Variants: *eam/alloy/gpu*, *eam/alloy/intel*, *eam/alloy/kk*, *eam/alloy/omp*, *eam/alloy/opt* pair_style eam/cd command ========================= @@ -45,20 +38,7 @@ pair_style eam/cd/old command pair_style eam/fs command ========================= -pair_style eam/fs/gpu command -============================= - -pair_style eam/fs/intel command -=============================== - -pair_style eam/fs/kk command -============================ - -pair_style eam/fs/omp command -============================= - -pair_style eam/fs/opt command -============================= +Accelerator Variants: *eam/fs/gpu*, *eam/fs/intel*, *eam/fs/kk*, *eam/fs/omp*, *eam/fs/opt* Syntax """""" diff --git a/doc/src/pair_edip.rst b/doc/src/pair_edip.rst index d8e747ddf4..8f8d70f2f6 100644 --- a/doc/src/pair_edip.rst +++ b/doc/src/pair_edip.rst @@ -1,10 +1,11 @@ .. index:: pair_style edip +.. index:: pair_style edip/omp +.. index:: pair_style edip/multi pair_style edip command ======================= -pair_style edip/omp command -=========================== +Accelerator Variants: *edip/omp* pair_style edip/multi command ============================= diff --git a/doc/src/pair_eim.rst b/doc/src/pair_eim.rst index aef7dba3a4..8360dbab64 100644 --- a/doc/src/pair_eim.rst +++ b/doc/src/pair_eim.rst @@ -1,10 +1,10 @@ .. index:: pair_style eim +.. index:: pair_style eim/omp pair_style eim command ====================== -pair_style eim/omp command -========================== +Accelerator Variants: *eim/omp* Syntax """""" diff --git a/doc/src/pair_exp6_rx.rst b/doc/src/pair_exp6_rx.rst index d6fe4850ce..49a4c5436f 100644 --- a/doc/src/pair_exp6_rx.rst +++ b/doc/src/pair_exp6_rx.rst @@ -1,10 +1,10 @@ .. index:: pair_style exp6/rx +.. index:: pair_style exp6/rx/kk pair_style exp6/rx command ========================== -pair_style exp6/rx/kk command -============================= +Accelerator Variants: *exp6/rx/kk* Syntax """""" diff --git a/doc/src/pair_fep_soft.rst b/doc/src/pair_fep_soft.rst index bd38fe1ec9..109ddfdf21 100644 --- a/doc/src/pair_fep_soft.rst +++ b/doc/src/pair_fep_soft.rst @@ -1,64 +1,75 @@ .. index:: pair_style lj/cut/soft +.. index:: pair_style lj/cut/soft/omp +.. index:: pair_style lj/cut/coul/cut/soft +.. index:: pair_style lj/cut/coul/cut/soft/omp +.. index:: pair_style lj/cut/coul/long/soft +.. index:: pair_style lj/cut/coul/long/soft/omp +.. index:: pair_style lj/cut/tip4p/long/soft +.. index:: pair_style lj/cut/tip4p/long/soft/omp +.. index:: pair_style lj/charmm/coul/long/soft +.. index:: pair_style lj/charmm/coul/long/soft/omp +.. index:: pair_style lj/class2/soft +.. index:: pair_style lj/class2/coul/cut/soft +.. index:: pair_style lj/class2/coul/long/soft +.. index:: pair_style coul/cut/soft +.. index:: pair_style coul/cut/soft/omp +.. index:: pair_style coul/long/soft +.. index:: pair_style coul/long/soft/omp +.. index:: pair_style tip4p/long/soft +.. index:: pair_style tip4p/long/soft/omp +.. index:: pair_style morse/soft pair_style lj/cut/soft command ============================== -pair_style lj/cut/soft/omp command -================================== +Accelerator Variants: *lj/cut/soft/omp* pair_style lj/cut/coul/cut/soft command ======================================= -pair_style lj/cut/coul/cut/soft/omp command -=========================================== +Accelerator Variants: *lj/cut/coul/cut/soft/omp* pair_style lj/cut/coul/long/soft command ======================================== -pair_style lj/cut/coul/long/soft/omp command -============================================ +Accelerator Variants: *lj/cut/coul/long/soft/omp* pair_style lj/cut/tip4p/long/soft command -========================================== +========================================= -pair_style lj/cut/tip4p/long/soft/omp command -============================================== +Accelerator Variants: *lj/cut/tip4p/long/soft/omp* pair_style lj/charmm/coul/long/soft command -============================================ - -pair_style lj/charmm/coul/long/soft/omp command -================================================ - -pair_style lj/class2/soft command -================================== - -pair_style lj/class2/coul/cut/soft command =========================================== -pair_style lj/class2/coul/long/soft command -============================================ +Accelerator Variants: *lj/charmm/coul/long/soft/omp* -pair_style coul/cut/soft command +pair_style lj/class2/soft command ================================= -pair_style coul/cut/soft/omp command -===================================== +pair_style lj/class2/coul/cut/soft command +========================================== + +pair_style lj/class2/coul/long/soft command +=========================================== + +pair_style coul/cut/soft command +================================ + +Accelerator Variants: *coul/cut/soft/omp* pair_style coul/long/soft command -================================== +================================= -pair_style coul/long/soft/omp command -====================================== +Accelerator Variants: *coul/long/soft/omp* pair_style tip4p/long/soft command -=================================== +================================== -pair_style tip4p/long/soft/omp command -======================================= +Accelerator Variants: *tip4p/long/soft/omp* pair_style morse/soft command -============================== +============================= Syntax """""" diff --git a/doc/src/pair_gauss.rst b/doc/src/pair_gauss.rst index 8c7ce74174..9b516cce7b 100644 --- a/doc/src/pair_gauss.rst +++ b/doc/src/pair_gauss.rst @@ -1,19 +1,18 @@ .. index:: pair_style gauss +.. index:: pair_style gauss/gpu +.. index:: pair_style gauss/omp +.. index:: pair_style gauss/cut +.. index:: pair_style gauss/cut/omp pair_style gauss command ======================== -pair_style gauss/gpu command -============================ - -pair_style gauss/omp command -============================ +Accelerator Variants: *gauss/gpu*, *gauss/omp* pair_style gauss/cut command ============================ -pair_style gauss/cut/omp command -================================ +Accelerator Variants: *gauss/cut/omp* Syntax """""" diff --git a/doc/src/pair_gayberne.rst b/doc/src/pair_gayberne.rst index 1e8094feef..309e949f97 100644 --- a/doc/src/pair_gayberne.rst +++ b/doc/src/pair_gayberne.rst @@ -1,16 +1,12 @@ .. index:: pair_style gayberne +.. index:: pair_style gayberne/gpu +.. index:: pair_style gayberne/intel +.. index:: pair_style gayberne/omp pair_style gayberne command =========================== -pair_style gayberne/gpu command -=============================== - -pair_style gayberne/intel command -================================= - -pair_style gayberne/omp command -=============================== +Accelerator Variants: *gayberne/gpu*, *gayberne/intel*, *gayberne/omp* Syntax """""" diff --git a/doc/src/pair_gran.rst b/doc/src/pair_gran.rst index 9aacfdfa31..d3f87839e8 100644 --- a/doc/src/pair_gran.rst +++ b/doc/src/pair_gran.rst @@ -1,25 +1,25 @@ .. index:: pair_style gran/hooke +.. index:: pair_style gran/hooke/omp +.. index:: pair_style gran/hooke/history +.. index:: pair_style gran/hooke/history/omp +.. index:: pair_style gran/hooke/history/kk +.. index:: pair_style gran/hertz/history +.. index:: pair_style gran/hertz/history/omp pair_style gran/hooke command ============================= -pair_style gran/hooke/omp command -================================= +Accelerator Variants: *gran/hooke/omp* pair_style gran/hooke/history command ===================================== -pair_style gran/hooke/history/omp command -========================================= - -pair_style gran/hooke/history/kk command -======================================== +Accelerator Variants: *gran/hooke/history/omp*, *gran/hooke/history/kk* pair_style gran/hertz/history command ===================================== -pair_style gran/hertz/history/omp command -========================================= +Accelerator Variants: *gran/hertz/history/omp* Syntax """""" diff --git a/doc/src/pair_gromacs.rst b/doc/src/pair_gromacs.rst index a4c065e24d..88cb4ce880 100644 --- a/doc/src/pair_gromacs.rst +++ b/doc/src/pair_gromacs.rst @@ -1,25 +1,20 @@ .. index:: pair_style lj/gromacs +.. index:: pair_style lj/gromacs/gpu +.. index:: pair_style lj/gromacs/kk +.. index:: pair_style lj/gromacs/omp +.. index:: pair_style lj/gromacs/coul/gromacs +.. index:: pair_style lj/gromacs/coul/gromacs/kk +.. index:: pair_style lj/gromacs/coul/gromacs/omp pair_style lj/gromacs command ============================= -pair_style lj/gromacs/gpu command -================================= - -pair_style lj/gromacs/kk command -================================ - -pair_style lj/gromacs/omp command -================================= +Accelerator Variants: *lj/gromacs/gpu*, *lj/gromacs/kk*, *lj/gromacs/omp* pair_style lj/gromacs/coul/gromacs command ========================================== -pair_style lj/gromacs/coul/gromacs/kk command -============================================= - -pair_style lj/gromacs/coul/gromacs/omp command -============================================== +Accelerator Variants: *lj/gromacs/coul/gromacs/kk*, *lj/gromacs/coul/gromacs/omp* Syntax """""" diff --git a/doc/src/pair_gw.rst b/doc/src/pair_gw.rst index 544d13df9b..d0a7e69b00 100644 --- a/doc/src/pair_gw.rst +++ b/doc/src/pair_gw.rst @@ -1,4 +1,5 @@ .. index:: pair_style gw +.. index:: pair_style gw/zbl pair_style gw command ===================== diff --git a/doc/src/pair_hbond_dreiding.rst b/doc/src/pair_hbond_dreiding.rst index 0d821fa946..5e7183a348 100644 --- a/doc/src/pair_hbond_dreiding.rst +++ b/doc/src/pair_hbond_dreiding.rst @@ -1,16 +1,17 @@ .. index:: pair_style hbond/dreiding/lj +.. index:: pair_style hbond/dreiding/lj/omp +.. index:: pair_style hbond/dreiding/morse +.. index:: pair_style hbond/dreiding/morse/omp pair_style hbond/dreiding/lj command ==================================== -pair_style hbond/dreiding/lj/omp command -======================================== +Accelerator Variants: *hbond/dreiding/lj/omp* pair_style hbond/dreiding/morse command ======================================= -pair_style hbond/dreiding/morse/omp command -=========================================== +Accelerator Variants: *hbond/dreiding/morse/omp* Syntax """""" diff --git a/doc/src/pair_hybrid.rst b/doc/src/pair_hybrid.rst index 924e19a8b3..558c326175 100644 --- a/doc/src/pair_hybrid.rst +++ b/doc/src/pair_hybrid.rst @@ -1,16 +1,17 @@ .. index:: pair_style hybrid +.. index:: pair_style hybrid/kk +.. index:: pair_style hybrid/overlay +.. index:: pair_style hybrid/overlay/kk pair_style hybrid command ========================= -pair_style hybrid/kk command -============================ +Accelerator Variants: *hybrid/kk* pair_style hybrid/overlay command ================================= -pair_style hybrid/overlay/kk command -==================================== +Accelerator Variants: *hybrid/overlay/kk* Syntax """""" diff --git a/doc/src/pair_lj.rst b/doc/src/pair_lj.rst index b8c5be3940..22f0d0dd37 100644 --- a/doc/src/pair_lj.rst +++ b/doc/src/pair_lj.rst @@ -5,7 +5,6 @@ .. index:: pair_style lj/cut/opt .. index:: pair_style lj/cut/omp - pair_style lj/cut command ========================= diff --git a/doc/src/pair_lj96.rst b/doc/src/pair_lj96.rst index 7ea3c2c9c1..3f1172618b 100644 --- a/doc/src/pair_lj96.rst +++ b/doc/src/pair_lj96.rst @@ -1,13 +1,11 @@ .. index:: pair_style lj96/cut +.. index:: pair_style lj96/cut/gpu +.. index:: pair_style lj96/cut/omp pair_style lj96/cut command =========================== -pair_style lj96/cut/gpu command -=============================== - -pair_style lj96/cut/omp command -=============================== +Accelerator Variants: *lj96/cut/gpu*, *lj96/cut/omp* Syntax """""" diff --git a/doc/src/pair_lj_cubic.rst b/doc/src/pair_lj_cubic.rst index 800de20e6f..e220e6e67c 100644 --- a/doc/src/pair_lj_cubic.rst +++ b/doc/src/pair_lj_cubic.rst @@ -1,13 +1,11 @@ .. index:: pair_style lj/cubic +.. index:: pair_style lj/cubic/gpu +.. index:: pair_style lj/cubic/omp pair_style lj/cubic command =========================== -pair_style lj/cubic/gpu command -=============================== - -pair_style lj/cubic/omp command -=============================== +Accelerator Variants: *lj/cubic/gpu*, *lj/cubic/omp* Syntax """""" diff --git a/doc/src/pair_lj_cut_coul.rst b/doc/src/pair_lj_cut_coul.rst index ec34777d8d..f729c2016e 100644 --- a/doc/src/pair_lj_cut_coul.rst +++ b/doc/src/pair_lj_cut_coul.rst @@ -30,7 +30,7 @@ Accelerator Variants: *lj/cut/coul/cut/gpu*, *lj/cut/coul/cut/kk*, *lj/cut/coul/ pair_style lj/cut/coul/debye command ==================================== -Accelerator Variants: *lj/cut/coul/debye/gpu*, lj/cut/coul/debye/kk, *lj/cut/coul/debye/omp* +Accelerator Variants: *lj/cut/coul/debye/gpu*, *lj/cut/coul/debye/kk*, *lj/cut/coul/debye/omp* pair_style lj/cut/coul/dsf command ================================== diff --git a/doc/src/pair_lj_cut_tip4p.rst b/doc/src/pair_lj_cut_tip4p.rst index 14e970a59e..4f55f3b14e 100644 --- a/doc/src/pair_lj_cut_tip4p.rst +++ b/doc/src/pair_lj_cut_tip4p.rst @@ -5,7 +5,6 @@ .. index:: pair_style lj/cut/tip4p/long/omp .. index:: pair_style lj/cut/tip4p/long/opt - pair_style lj/cut/tip4p/cut command =================================== diff --git a/doc/src/pair_lj_expand.rst b/doc/src/pair_lj_expand.rst index 8defbc3635..4d619a67e2 100644 --- a/doc/src/pair_lj_expand.rst +++ b/doc/src/pair_lj_expand.rst @@ -1,22 +1,19 @@ .. index:: pair_style lj/expand +.. index:: pair_style lj/expand/gpu +.. index:: pair_style lj/expand/kk +.. index:: pair_style lj/expand/omp +.. index:: pair_style lj/expand/coul/long +.. index:: pair_style lj/expand/coul/long/gpu pair_style lj/expand command ============================ -pair_style lj/expand/gpu command -================================ - -pair_style lj/expand/kk command -=============================== - -pair_style lj/expand/omp command -================================ +Accelerator Variants: *lj/expand/gpu*, *lj/expand/kk*, *lj/expand/omp* pair_style lj/expand/coul/long command ====================================== -pair_style lj/expand/coul/long/gpu command -========================================== +Accelerator Variants: *lj/expand/coul/long/gpu* Syntax """""" diff --git a/doc/src/pair_lj_long.rst b/doc/src/pair_lj_long.rst index ff6d834ad6..3609d093d9 100644 --- a/doc/src/pair_lj_long.rst +++ b/doc/src/pair_lj_long.rst @@ -1,22 +1,19 @@ .. index:: pair_style lj/long/coul/long +.. index:: pair_style lj/long/coul/long/intel +.. index:: pair_style lj/long/coul/long/omp +.. index:: pair_style lj/long/coul/long/opt +.. index:: pair_style lj/long/tip4p/long +.. index:: pair_style lj/long/tip4p/long/omp pair_style lj/long/coul/long command ==================================== -pair_style lj/long/coul/long/intel command -========================================== - -pair_style lj/long/coul/long/omp command -======================================== - -pair_style lj/long/coul/long/opt command -======================================== +Accelerator Variants: *lj/long/coul/long/intel*, *lj/long/coul/long/omp*, *lj/long/coul/long/opt* pair_style lj/long/tip4p/long command ===================================== -pair_style lj/long/tip4p/long/omp command -========================================= +Accelerator Variants: *lj/long/tip4p/long/omp* Syntax """""" diff --git a/doc/src/pair_lj_smooth.rst b/doc/src/pair_lj_smooth.rst index 3137a17f73..7ba12c89ba 100644 --- a/doc/src/pair_lj_smooth.rst +++ b/doc/src/pair_lj_smooth.rst @@ -1,10 +1,10 @@ .. index:: pair_style lj/smooth +.. index:: pair_style lj/smooth/omp pair_style lj/smooth command ============================ -pair_style lj/smooth/omp command -================================ +Accelerator Variants: *lj/smooth/omp* Syntax """""" diff --git a/doc/src/pair_lj_smooth_linear.rst b/doc/src/pair_lj_smooth_linear.rst index 833a4f035d..b105fc4911 100644 --- a/doc/src/pair_lj_smooth_linear.rst +++ b/doc/src/pair_lj_smooth_linear.rst @@ -1,10 +1,10 @@ .. index:: pair_style lj/smooth/linear +.. index:: pair_style lj/smooth/linear/omp pair_style lj/smooth/linear command =================================== -pair_style lj/smooth/linear/omp command -======================================= +Accelerator Variants: *lj/smooth/linear/omp* Syntax """""" diff --git a/doc/src/pair_lubricate.rst b/doc/src/pair_lubricate.rst index 711f2576b3..e83a16c80b 100644 --- a/doc/src/pair_lubricate.rst +++ b/doc/src/pair_lubricate.rst @@ -1,16 +1,17 @@ .. index:: pair_style lubricate +.. index:: pair_style lubricate/omp +.. index:: pair_style lubricate/poly +.. index:: pair_style lubricate/poly/omp pair_style lubricate command ============================ -pair_style lubricate/omp command -================================ +Accelerator Variants: *lubricate/omp* pair_style lubricate/poly command ================================= -pair_style lubricate/poly/omp command -===================================== +Accelerator Variants: *lubricate/poly/omp* Syntax """""" diff --git a/doc/src/pair_lubricateU.rst b/doc/src/pair_lubricateU.rst index f4224ede47..a9382556c5 100644 --- a/doc/src/pair_lubricateU.rst +++ b/doc/src/pair_lubricateU.rst @@ -1,4 +1,5 @@ .. index:: pair_style lubricateU +.. index:: pair_style lubricateU/poly pair_style lubricateU command ============================= diff --git a/doc/src/pair_mdf.rst b/doc/src/pair_mdf.rst index 1b46c51220..84d312e47c 100644 --- a/doc/src/pair_mdf.rst +++ b/doc/src/pair_mdf.rst @@ -1,4 +1,6 @@ .. index:: pair_style lj/mdf +.. index:: pair_style buck/mdf +.. index:: pair_style lennard/mdf pair_style lj/mdf command ========================= diff --git a/doc/src/pair_meam_spline.rst b/doc/src/pair_meam_spline.rst index bbba66c2b5..b5c94385fa 100644 --- a/doc/src/pair_meam_spline.rst +++ b/doc/src/pair_meam_spline.rst @@ -1,10 +1,10 @@ .. index:: pair_style meam/spline +.. index:: pair_style meam/spline/omp pair_style meam/spline command ============================== -pair_style meam/spline/omp command -================================== +Accelerator Variants: *meam/spline/omp* Syntax """""" diff --git a/doc/src/pair_mesodpd.rst b/doc/src/pair_mesodpd.rst index 093eb707ad..1efdfa8b45 100644 --- a/doc/src/pair_mesodpd.rst +++ b/doc/src/pair_mesodpd.rst @@ -1,4 +1,7 @@ .. index:: pair_style edpd +.. index:: pair_style mdpd +.. index:: pair_style mdpd/rhosum +.. index:: pair_style tdpd pair_style edpd command ======================= diff --git a/doc/src/pair_mesont_tpm.rst b/doc/src/pair_mesont_tpm.rst index f5b5789315..e26f16fba3 100644 --- a/doc/src/pair_mesont_tpm.rst +++ b/doc/src/pair_mesont_tpm.rst @@ -1,7 +1,7 @@ .. index:: pair_style mesont/tpm pair_style mesont/tpm command -============================== +============================= Syntax """""" diff --git a/doc/src/pair_mie.rst b/doc/src/pair_mie.rst index 469817ee5e..e1a34893c9 100644 --- a/doc/src/pair_mie.rst +++ b/doc/src/pair_mie.rst @@ -1,10 +1,10 @@ .. index:: pair_style mie/cut +.. index:: pair_style mie/cut/gpu pair_style mie/cut command ========================== -pair_style mie/cut/gpu command -============================== +Accelerator Variants: *mie/cut/gpu* Syntax """""" diff --git a/doc/src/pair_mm3_switch3_coulgauss_long.rst b/doc/src/pair_mm3_switch3_coulgauss_long.rst index 2b7e9cb903..798df0bf7a 100644 --- a/doc/src/pair_mm3_switch3_coulgauss_long.rst +++ b/doc/src/pair_mm3_switch3_coulgauss_long.rst @@ -1,7 +1,7 @@ .. index:: pair_style mm3/switch3/coulgauss/long pair_style mm3/switch3/coulgauss/long command -============================================== +============================================= Syntax """""" diff --git a/doc/src/pair_morse.rst b/doc/src/pair_morse.rst index 1c8e731bc1..5ede37a916 100644 --- a/doc/src/pair_morse.rst +++ b/doc/src/pair_morse.rst @@ -1,25 +1,20 @@ .. index:: pair_style morse +.. index:: pair_style morse/gpu +.. index:: pair_style morse/omp +.. index:: pair_style morse/opt +.. index:: pair_style morse/smooth/linear +.. index:: pair_style morse/smooth/linear/omp +.. index:: pair_style morse/kk pair_style morse command ======================== -pair_style morse/gpu command -============================ - -pair_style morse/omp command -============================ - -pair_style morse/opt command -============================ +Accelerator Variants: *morse/gpu*, *morse/omp*, *morse/opt*, *morse/kk* pair_style morse/smooth/linear command ====================================== -pair_style morse/smooth/linear/omp command -========================================== - -pair_style morse/kk command -=========================== +Accelerator Variants: *morse/smooth/linear/omp* Syntax """""" diff --git a/doc/src/pair_multi_lucy_rx.rst b/doc/src/pair_multi_lucy_rx.rst index 42a2525195..f6e6652271 100644 --- a/doc/src/pair_multi_lucy_rx.rst +++ b/doc/src/pair_multi_lucy_rx.rst @@ -1,10 +1,10 @@ .. index:: pair_style multi/lucy/rx +.. index:: pair_style multi/lucy/rx/kk pair_style multi/lucy/rx command ================================ -pair_style multi/lucy/rx/kk command -=================================== +Accelerator Variants: *multi/lucy/rx/kk* Syntax """""" diff --git a/doc/src/pair_nm.rst b/doc/src/pair_nm.rst index 7d7648cdc9..d38e21fd15 100644 --- a/doc/src/pair_nm.rst +++ b/doc/src/pair_nm.rst @@ -1,22 +1,24 @@ .. index:: pair_style nm/cut +.. index:: pair_style nm/cut/coul/cut +.. index:: pair_style nm/cut/coul/long +.. index:: pair_style nm/cut/omp +.. index:: pair_style nm/cut/coul/cut/omp +.. index:: pair_style nm/cut/coul/long/omp pair_style nm/cut command ========================= +Accelerator Variants: *nm/cut/omp* + pair_style nm/cut/coul/cut command ================================== +Accelerator Variants: *nm/cut/coul/cut/omp* + pair_style nm/cut/coul/long command =================================== -pair_style nm/cut/omp command -============================= - -pair_style nm/cut/coul/cut/omp command -====================================== - -pair_style nm/cut/coul/long/omp command -======================================= +Accelerator Variants: *nm/cut/coul/long/omp* Syntax """""" diff --git a/doc/src/pair_oxdna.rst b/doc/src/pair_oxdna.rst index c16e872ccf..4cc57868b4 100644 --- a/doc/src/pair_oxdna.rst +++ b/doc/src/pair_oxdna.rst @@ -1,4 +1,8 @@ .. index:: pair_style oxdna/excv +.. index:: pair_style oxdna/stk +.. index:: pair_style oxdna/hbond +.. index:: pair_style oxdna/xstk +.. index:: pair_style oxdna/coaxstk pair_style oxdna/excv command ============================= diff --git a/doc/src/pair_oxdna2.rst b/doc/src/pair_oxdna2.rst index f63bec6a7f..ee01f2f488 100644 --- a/doc/src/pair_oxdna2.rst +++ b/doc/src/pair_oxdna2.rst @@ -1,4 +1,9 @@ .. index:: pair_style oxdna2/excv +.. index:: pair_style oxdna2/stk +.. index:: pair_style oxdna2/hbond +.. index:: pair_style oxdna2/xstk +.. index:: pair_style oxdna2/coaxstk +.. index:: pair_style oxdna2/dh pair_style oxdna2/excv command ============================== diff --git a/doc/src/pair_oxrna2.rst b/doc/src/pair_oxrna2.rst index 05fd27b4a0..831e4d9c4e 100644 --- a/doc/src/pair_oxrna2.rst +++ b/doc/src/pair_oxrna2.rst @@ -1,4 +1,9 @@ .. index:: pair_style oxrna2/excv +.. index:: pair_style oxrna2/stk +.. index:: pair_style oxrna2/hbond +.. index:: pair_style oxrna2/xstk +.. index:: pair_style oxrna2/coaxstk +.. index:: pair_style oxrna2/dh pair_style oxrna2/excv command ============================== diff --git a/doc/src/pair_peri.rst b/doc/src/pair_peri.rst index de487df9a3..2a1c7f6aa5 100644 --- a/doc/src/pair_peri.rst +++ b/doc/src/pair_peri.rst @@ -1,16 +1,19 @@ .. index:: pair_style peri/pmb +.. index:: pair_style peri/pmb/omp +.. index:: pair_style peri/lps +.. index:: pair_style peri/lps/omp +.. index:: pair_style peri/ves +.. index:: pair_style peri/eps pair_style peri/pmb command =========================== -pair_style peri/pmb/omp command -=============================== +Accelerator Variants: *peri/pmb/omp* pair_style peri/lps command =========================== -pair_style peri/lps/omp command -=============================== +Accelerator Variants: *peri/lps/omp* pair_style peri/ves command =========================== diff --git a/doc/src/pair_reaxc.rst b/doc/src/pair_reaxc.rst index 4d4368729e..13ff16d4d3 100644 --- a/doc/src/pair_reaxc.rst +++ b/doc/src/pair_reaxc.rst @@ -1,13 +1,11 @@ .. index:: pair_style reax/c +.. index:: pair_style reax/c/kk +.. index:: pair_style reax/c/omp pair_style reax/c command ========================= -pair_style reax/c/kk command -============================ - -pair_style reax/c/omp command -============================= +Accelerator Variants: *reax/c/kk*, *reax/c/omp* Syntax """""" diff --git a/doc/src/pair_resquared.rst b/doc/src/pair_resquared.rst index 33b40f6776..448af410db 100644 --- a/doc/src/pair_resquared.rst +++ b/doc/src/pair_resquared.rst @@ -1,13 +1,11 @@ .. index:: pair_style resquared +.. index:: pair_style resquared/gpu +.. index:: pair_style resquared/omp pair_style resquared command ============================ -pair_style resquared/gpu command -================================ - -pair_style resquared/omp command -================================ +Accelerator Variants: *resquared/gpu*, *resquared/omp* Syntax """""" diff --git a/doc/src/pair_sdk.rst b/doc/src/pair_sdk.rst index 501ce6cd85..541c53d37e 100644 --- a/doc/src/pair_sdk.rst +++ b/doc/src/pair_sdk.rst @@ -1,31 +1,27 @@ .. index:: pair_style lj/sdk +.. index:: pair_style lj/sdk/gpu +.. index:: pair_style lj/sdk/kk +.. index:: pair_style lj/sdk/omp +.. index:: pair_style lj/sdk/coul/long +.. index:: pair_style lj/sdk/coul/long/gpu +.. index:: pair_style lj/sdk/coul/long/omp +.. index:: pair_style lj/sdk/coul/msm +.. index:: pair_style lj/sdk/coul/msm/omp pair_style lj/sdk command ========================= -pair_style lj/sdk/gpu command -============================= - -pair_style lj/sdk/kk command -============================ - -pair_style lj/sdk/omp command -============================= +Accelerator Variants: *lj/sdk/gpu*, *lj/sdk/kk*, *lj/sdk/omp* pair_style lj/sdk/coul/long command =================================== -pair_style lj/sdk/coul/long/gpu command -======================================= - -pair_style lj/sdk/coul/long/omp command -======================================= +Accelerator Variants: *lj/sdk/coul/long/gpu*, *lj/sdk/coul/long/omp* pair_style lj/sdk/coul/msm command ================================== -pair_style lj/sdk/coul/msm/omp command -====================================== +Accelerator Variants: *lj/sdk/coul/msm/omp* Syntax """""" diff --git a/doc/src/pair_smd_triangulated_surface.rst b/doc/src/pair_smd_triangulated_surface.rst index 9dbd66dcd8..1e33254865 100644 --- a/doc/src/pair_smd_triangulated_surface.rst +++ b/doc/src/pair_smd_triangulated_surface.rst @@ -1,7 +1,7 @@ .. index:: pair_style smd/tri_surface pair_style smd/tri_surface command -=================================== +================================== Syntax """""" diff --git a/doc/src/pair_smd_ulsph.rst b/doc/src/pair_smd_ulsph.rst index 6b3ee7f019..33946d4649 100644 --- a/doc/src/pair_smd_ulsph.rst +++ b/doc/src/pair_smd_ulsph.rst @@ -1,7 +1,7 @@ .. index:: pair_style smd/ulsph pair_style smd/ulsph command -============================= +============================ Syntax """""" diff --git a/doc/src/pair_snap.rst b/doc/src/pair_snap.rst index 2ba2a9dd58..8aa10f5986 100644 --- a/doc/src/pair_snap.rst +++ b/doc/src/pair_snap.rst @@ -1,10 +1,10 @@ .. index:: pair_style snap +.. index:: pair_style snap/kk pair_style snap command ======================= -pair_style snap/kk command -========================== +Accelerator Variants: *snap/kk* Syntax """""" diff --git a/doc/src/pair_soft.rst b/doc/src/pair_soft.rst index 294868f872..cc024cb6dd 100644 --- a/doc/src/pair_soft.rst +++ b/doc/src/pair_soft.rst @@ -1,13 +1,11 @@ .. index:: pair_style soft +.. index:: pair_style soft/gpu +.. index:: pair_style soft/omp pair_style soft command ======================= -pair_style soft/gpu command -=========================== - -pair_style soft/omp command -=========================== +Accelerator Variants: *soft/gpu*, *soft/omp* Syntax """""" diff --git a/doc/src/pair_spin_dipole.rst b/doc/src/pair_spin_dipole.rst index c86083f1e5..d1bbf3b699 100644 --- a/doc/src/pair_spin_dipole.rst +++ b/doc/src/pair_spin_dipole.rst @@ -1,4 +1,5 @@ .. index:: pair_style spin/dipole/cut +.. index:: pair_style spin/dipole/long pair_style spin/dipole/cut command ================================== diff --git a/doc/src/pair_spin_magelec.rst b/doc/src/pair_spin_magelec.rst index 5ef01ad10c..1860ed4677 100644 --- a/doc/src/pair_spin_magelec.rst +++ b/doc/src/pair_spin_magelec.rst @@ -1,7 +1,7 @@ .. index:: pair_style spin/magelec pair_style spin/magelec command -================================ +=============================== Syntax """""" diff --git a/doc/src/pair_sw.rst b/doc/src/pair_sw.rst index b673f652aa..bea417ed3d 100644 --- a/doc/src/pair_sw.rst +++ b/doc/src/pair_sw.rst @@ -1,19 +1,13 @@ .. index:: pair_style sw +.. index:: pair_style sw/gpu +.. index:: pair_style sw/intel +.. index:: pair_style sw/kk +.. index:: pair_style sw/omp pair_style sw command ===================== -pair_style sw/gpu command -========================= - -pair_style sw/intel command -=========================== - -pair_style sw/kk command -======================== - -pair_style sw/omp command -========================= +Accelerator Variants: *sw/gpu*, *sw/intel*, *sw/kk*, *sw/omp* Syntax """""" diff --git a/doc/src/pair_table.rst b/doc/src/pair_table.rst index 1a35cea7fd..39ed690551 100644 --- a/doc/src/pair_table.rst +++ b/doc/src/pair_table.rst @@ -1,16 +1,12 @@ .. index:: pair_style table +.. index:: pair_style table/gpu +.. index:: pair_style table/kk +.. index:: pair_style table/omp pair_style table command ======================== -pair_style table/gpu command -============================ - -pair_style table/kk command -=========================== - -pair_style table/omp command -============================ +Accelerator Variants: *table/gpu*, *table/kk*, *table/omp* Syntax """""" diff --git a/doc/src/pair_table_rx.rst b/doc/src/pair_table_rx.rst index 5545da22ef..9d23a479a3 100644 --- a/doc/src/pair_table_rx.rst +++ b/doc/src/pair_table_rx.rst @@ -1,10 +1,10 @@ .. index:: pair_style table/rx +.. index:: pair_style table/rx/kk pair_style table/rx command =========================== -pair_style table/rx/kk command -============================== +Accelerator Variants: *table/rx/kk* Syntax """""" diff --git a/doc/src/pair_tersoff.rst b/doc/src/pair_tersoff.rst index 251e12c87a..d9e5d60cd9 100644 --- a/doc/src/pair_tersoff.rst +++ b/doc/src/pair_tersoff.rst @@ -1,25 +1,20 @@ .. index:: pair_style tersoff +.. index:: pair_style tersoff/table +.. index:: pair_style tersoff/gpu +.. index:: pair_style tersoff/intel +.. index:: pair_style tersoff/kk +.. index:: pair_style tersoff/omp +.. index:: pair_style tersoff/table/omp pair_style tersoff command ========================== +Accelerator Variants: *tersoff/gpu*, *tersoff/intel*, *tersoff/kk*, *tersoff/omp* + pair_style tersoff/table command ================================ -pair_style tersoff/gpu command -============================== - -pair_style tersoff/intel command -================================ - -pair_style tersoff/kk command -============================= - -pair_style tersoff/omp command -============================== - -pair_style tersoff/table/omp command -==================================== +Accelerator Variants: *tersoff/table/omp* Syntax """""" diff --git a/doc/src/pair_tersoff_mod.rst b/doc/src/pair_tersoff_mod.rst index 0426e65f14..7457541c18 100644 --- a/doc/src/pair_tersoff_mod.rst +++ b/doc/src/pair_tersoff_mod.rst @@ -1,22 +1,19 @@ .. index:: pair_style tersoff/mod +.. index:: pair_style tersoff/mod/c +.. index:: pair_style tersoff/mod/gpu +.. index:: pair_style tersoff/mod/kk +.. index:: pair_style tersoff/mod/omp +.. index:: pair_style tersoff/mod/c/omp pair_style tersoff/mod command ============================== +Accelerator Variants: *tersoff/mod/gpu*, *tersoff/mod/kk*, *tersoff/mod/omp* + pair_style tersoff/mod/c command ================================ -pair_style tersoff/mod/gpu command -================================== - -pair_style tersoff/mod/kk command -================================= - -pair_style tersoff/mod/omp command -================================== - -pair_style tersoff/mod/c/omp command -==================================== +Accelerator Variants: *tersoff/mod/c/omp* Syntax """""" diff --git a/doc/src/pair_tersoff_zbl.rst b/doc/src/pair_tersoff_zbl.rst index eff394d9a0..19e77ce8eb 100644 --- a/doc/src/pair_tersoff_zbl.rst +++ b/doc/src/pair_tersoff_zbl.rst @@ -1,16 +1,12 @@ .. index:: pair_style tersoff/zbl +.. index:: pair_style tersoff/zbl/gpu +.. index:: pair_style tersoff/zbl/kk +.. index:: pair_style tersoff/zbl/omp pair_style tersoff/zbl command ============================== -pair_style tersoff/zbl/gpu command -================================== - -pair_style tersoff/zbl/kk command -================================= - -pair_style tersoff/zbl/omp command -================================== +Accelerator Variants: *tersoff/zbl/gpu*, *tersoff/zbl/kk*, *tersoff/zbl/omp* Syntax """""" diff --git a/doc/src/pair_thole.rst b/doc/src/pair_thole.rst index 9b05e06cee..a8cf8ee044 100644 --- a/doc/src/pair_thole.rst +++ b/doc/src/pair_thole.rst @@ -1,4 +1,6 @@ .. index:: pair_style thole +.. index:: pair_style lj/cut/thole/long +.. index:: pair_style lj/cut/thole/long/omp pair_style thole command ======================== @@ -6,8 +8,7 @@ pair_style thole command pair_style lj/cut/thole/long command ==================================== -pair_style lj/cut/thole/long/omp command -======================================== +Accelerator Variants: *lj/cut/thole/long/omp* Syntax """""" diff --git a/doc/src/pair_ufm.rst b/doc/src/pair_ufm.rst index d9b08aaea2..140bb75ee7 100644 --- a/doc/src/pair_ufm.rst +++ b/doc/src/pair_ufm.rst @@ -1,16 +1,12 @@ .. index:: pair_style ufm +.. index:: pair_style ufm/gpu +.. index:: pair_style ufm/omp +.. index:: pair_style ufm/opt pair_style ufm command ====================== -pair_style ufm/gpu command -========================== - -pair_style ufm/omp command -========================== - -pair_style ufm/opt command -========================== +Accelerator Variants: *ufm/gpu*, *ufm/omp*, *ufm/opt* Syntax """""" diff --git a/doc/src/pair_vashishta.rst b/doc/src/pair_vashishta.rst index 0ad6cc3521..aef401ec7c 100644 --- a/doc/src/pair_vashishta.rst +++ b/doc/src/pair_vashishta.rst @@ -1,22 +1,19 @@ .. index:: pair_style vashishta +.. index:: pair_style vashishta/gpu +.. index:: pair_style vashishta/omp +.. index:: pair_style vashishta/kk +.. index:: pair_style vashishta/table +.. index:: pair_style vashishta/table/omp pair_style vashishta command ============================ -pair_style vashishta/gpu command -================================ - -pair_style vashishta/omp command -================================ - -pair_style vashishta/kk command -=============================== +Accelerator Variants: *vashishta/gpu*, *vashishta/omp*, *vashishta/kk* pair_style vashishta/table command ================================== -pair_style vashishta/table/omp command -====================================== +Accelerator Variants: *vashishta/table/omp* Syntax """""" diff --git a/doc/src/pair_yukawa.rst b/doc/src/pair_yukawa.rst index 079c19c3fd..057adbd60f 100644 --- a/doc/src/pair_yukawa.rst +++ b/doc/src/pair_yukawa.rst @@ -1,16 +1,12 @@ .. index:: pair_style yukawa +.. index:: pair_style yukawa/gpu +.. index:: pair_style yukawa/omp +.. index:: pair_style yukawa/kk pair_style yukawa command ========================= -pair_style yukawa/gpu command -============================= - -pair_style yukawa/omp command -============================= - -pair_style yukawa/kk command -============================ +Accelerator Variants: *yukawa/gpu*, *yukawa/omp*, *yukawa/kk* Syntax """""" diff --git a/doc/src/pair_yukawa_colloid.rst b/doc/src/pair_yukawa_colloid.rst index 78977118a1..4d21d8e8c3 100644 --- a/doc/src/pair_yukawa_colloid.rst +++ b/doc/src/pair_yukawa_colloid.rst @@ -1,13 +1,11 @@ .. index:: pair_style yukawa/colloid +.. index:: pair_style yukawa/colloid/gpu +.. index:: pair_style yukawa/colloid/omp pair_style yukawa/colloid command ================================= -pair_style yukawa/colloid/gpu command -===================================== - -pair_style yukawa/colloid/omp command -===================================== +Accelerator Variants: *yukawa/colloid/gpu*, *yukawa/colloid/omp* Syntax """""" diff --git a/doc/src/pair_zbl.rst b/doc/src/pair_zbl.rst index 5c25697484..e01cbf45f2 100644 --- a/doc/src/pair_zbl.rst +++ b/doc/src/pair_zbl.rst @@ -1,16 +1,12 @@ .. index:: pair_style zbl +.. index:: pair_style zbl/gpu +.. index:: pair_style zbl/kk +.. index:: pair_style zbl/omp pair_style zbl command ====================== -pair_style zbl/gpu command -========================== - -pair_style zbl/kk command -========================= - -pair_style zbl/omp command -========================== +Accelerator Variants: *zbl/gpu*, *zbl/kk*, *zbl/omp* Syntax """""" diff --git a/doc/utils/check-styles.py b/doc/utils/check-styles.py index 603f312e9d..f9a7d3e39a 100755 --- a/doc/utils/check-styles.py +++ b/doc/utils/check-styles.py @@ -60,6 +60,7 @@ reader = {} region = {} total = 0 +index_pattern = re.compile(r"^.. index:: (compute|fix|pair_style|angle_style|bond_style|dihedral_style|improper_style|kspace_style)\s+([a-zA-Z0-9/_]+)$") style_pattern = re.compile(r"(.+)Style\((.+),(.+)\)") upper = re.compile("[A-Z]+") gpu = re.compile("(.+)/gpu$") @@ -70,6 +71,26 @@ omp = re.compile("(.+)/omp$") opt = re.compile("(.+)/opt$") removed = re.compile("(.*)Deprecated$") +def load_index_entries_in_file(path): + entries = [] + with open(path, 'r') as reader: + for line in reader: + m = index_pattern.match(line) + if m: + command_type = m.group(1) + style = m.group(2) + entries.append((command_type, style)) + return entries + +def load_index_entries(): + index = {'compute': set(), 'fix': set(), 'pair_style': set(), 'angle_style': set(), + 'bond_style': set(), 'dihedral_style': set(), 'improper_style': set(), 'kspace_style': set()} + rst_files = glob(os.path.join(doc_dir, '*.rst')) + for f in rst_files: + for command_type, style in load_index_entries_in_file(f): + index[command_type].add(style) + return index + def register_style(styles, name, info): if name in styles: for key, value in info.items(): @@ -112,6 +133,24 @@ def check_style(filename, dirname, pattern, styles, name, suffix=False, skip=set counter += 1 return counter +def check_style_index(name, styles, index, skip=[]): + counter = 0 + for style in styles: + if style not in index and not styles[style]['removed'] and style not in skip: + print(f"{name} index entry {style} is missing") + counter += 1 + + for suffix in styles[style]: + if suffix == 'removed': continue + if suffix == 'kokkos': + suffix_style = f"{style}/kk" + else: + suffix_style = f"{style}/{suffix}" + if styles[style][suffix] and suffix_style not in index and style not in skip: + print(f"{name} index entry {suffix_style} is missing") + counter += 1 + return counter + for header in headers: if verbose: print("Checking ", header) with open(header) as f: @@ -207,6 +246,13 @@ Total number of styles (including suffixes): %d""" \ len(fix), len(improper), len(integrate), len(kspace), \ len(minimize), len(pair), len(reader), len(region), total)) +index = load_index_entries() + +total_index = 0 +for command_type, entries in index.items(): + total_index += len(entries) + +print("Total number of style index entries:", total_index) counter = 0 @@ -244,5 +290,18 @@ counter += check_style('Commands_kspace.rst', doc_dir, ":doc:`(.+) 0: + # override original file + shutil.move(new_file, orig_file) + else: + os.remove(new_file)