diff --git a/doc/src/Commands_compute.rst b/doc/src/Commands_compute.rst index 755000c976..712391c574 100644 --- a/doc/src/Commands_compute.rst +++ b/doc/src/Commands_compute.rst @@ -114,6 +114,7 @@ KOKKOS, o = OPENMP, t = OPT. * :doc:`property/grid ` * :doc:`property/local ` * :doc:`ptm/atom ` + * :doc:`rattlers ` * :doc:`rdf ` * :doc:`reduce ` * :doc:`reduce/chunk ` diff --git a/doc/src/Commands_fix.rst b/doc/src/Commands_fix.rst index 6fe321e3c9..3ab4533c80 100644 --- a/doc/src/Commands_fix.rst +++ b/doc/src/Commands_fix.rst @@ -123,6 +123,7 @@ OPT. * :doc:`mvv/tdpd ` * :doc:`neb ` * :doc:`neb/spin ` + * :doc:`nonaffine/displacement ` * :doc:`nph (ko) ` * :doc:`nph/asphere (o) ` * :doc:`nph/body ` diff --git a/doc/src/compute_rattlers.rst b/doc/src/compute_rattlers.rst index a0f0d1b54a..f873a65dbf 100644 --- a/doc/src/compute_rattlers.rst +++ b/doc/src/compute_rattlers.rst @@ -1,7 +1,7 @@ .. index:: compute rattlers compute rattlers command -============================ +======================== Syntax """""" diff --git a/doc/src/fix_nonaffine_displacement.rst b/doc/src/fix_nonaffine_displacement.rst index 85f51b2419..7764b64066 100644 --- a/doc/src/fix_nonaffine_displacement.rst +++ b/doc/src/fix_nonaffine_displacement.rst @@ -1,7 +1,7 @@ .. index:: fix nonaffine/displacement fix nonaffine/displacement command -=================== +================================== Syntax """""" @@ -77,7 +77,7 @@ this occurs will simply be zeroed. The *integrated* style simply integrates the velocity of particles every timestep to calculate a displacement. This style only works if used in conjunction with another fix that deforms the box and displaces -atom positions such as :doc:`the remap x option of fix deform `, +atom positions such as :doc:`fix deform ` with remap x, :doc:`fix press/berendsen `, or :doc:`fix nh `. Both of these methods require defining a reference state. With the *fixed* reference @@ -126,6 +126,6 @@ none ---------- -.. _nh-Martyna: +.. _d2min-Falk: -**(Martyna)** Martyna, Tobias and Klein, J Chem Phys, 101, 4177 (1994). \ No newline at end of file +**(Falk)** Falk and Langer PRE, 57, 7192 (1998). \ No newline at end of file