ICODE-ADC/lammps
4
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@3691 f3b2605a-c512-4ea7-a41b-209d697bcdaa

Browse Source
This commit is contained in:
sjplimp
2010-01-14 23:33:28 +00:00
parent 4a63d33e56
commit 2e51680815
90 changed files with 5491 additions and 5479 deletions
Download Patch File Download Diff File Expand all files Collapse all files

111
examples/min/log.min.15Jan10.linux.1 Normal file
View File

@ -0,0 +1,111 @@
LAMMPS (15 Jan 2010)
# 2d Lennard-Jones melt and subsequent energy minimization
units lj
dimension 2
atom_style atomic
lattice sq2 0.8442
Lattice spacing in x,y,z = 1.53919 1.53919 1.53919
region box block 0 20 0 20 -0.1 0.1
create_box 1 box
Created orthogonal box = (0 0 -0.153919) to (30.7838 30.7838 0.153919)
1 by 1 by 1 processor grid
create_atoms 1 box
Created 800 atoms
mass 1 1.0
velocity all create 5.0 87287 loop geom
pair_style lj/cut 2.5
pair_coeff 1 1 1.0 1.0 2.5
pair_modify shift yes
neighbor 0.3 bin
neigh_modify delay 0 every 1 check yes
fix 1 all nve
fix 2 all enforce2d
dump 1 all atom 100 dump.min
thermo 100
run 1000
Memory usage per processor = 1.70423 Mbytes
Step Temp E_pair E_mol TotEng Press
0 5 -2.461717 0 2.532033 5.0190509
100 3.2788864 -0.74311698 0 2.5316708 15.912832
200 3.3041082 -0.77000277 0 2.5299752 15.602653
300 3.3840228 -0.84859211 0 2.5312006 15.188203
400 3.3916063 -0.85694601 0 2.5304208 15.383853
500 3.3136052 -0.77935263 0 2.5301106 15.833296
600 3.3888915 -0.85213741 0 2.532518 15.162759
700 3.2123662 -0.67642106 0 2.5319297 16.310578
800 3.3016847 -0.76574936 0 2.5318082 15.639067
900 3.463125 -0.92707601 0 2.5317201 14.770608
1000 3.3134849 -0.7783474 0 2.5309957 15.658702
Loop time of 0.349325 on 1 procs for 1000 steps with 800 atoms
Pair time (%) = 0.233208 (66.7597)
Neigh time (%) = 0.0645969 (18.4919)
Comm time (%) = 0.0083034 (2.37699)
Outpt time (%) = 0.0124071 (3.55173)
Other time (%) = 0.0308094 (8.8197)
Nlocal: 800 ave 800 max 800 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Nghost: 316 ave 316 max 316 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Neighs: 7747 ave 7747 max 7747 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Total # of neighbors = 7747
Ave neighs/atom = 9.68375
Neighbor list builds = 203
Dangerous builds = 0
neigh_modify delay 0 every 1 check yes
dump_modify 1 every 25
thermo 50
minimize 1.0e-6 0.001 1000 10000
Memory usage per processor = 2.39088 Mbytes
Step Temp E_pair E_mol TotEng Press
1000 3.3134849 -0.7783474 0 2.5309957 15.658702
1050 3.3134849 -2.808351 0 0.50099208 1.7334413
1100 3.3134849 -2.8586611 0 0.45068195 1.6058414
1150 3.3134849 -2.8712625 0 0.43808058 1.6049732
1200 3.3134849 -2.8785429 0 0.43080018 1.5883814
1250 3.3134849 -2.8832131 0 0.42612994 1.6155122
1300 3.3134849 -2.8882533 0 0.42108976 1.6323994
1350 3.3134849 -2.8953262 0 0.41401689 1.5991374
1365 3.3134849 -2.895477 0 0.41386606 1.5988878
Loop time of 0.546619 on 1 procs for 365 steps with 800 atoms
Minimization stats:
Stopping criterion = energy tolerance
Energy initial, next-to-last, final =
-0.778347402608 -2.89547454669 -2.89547702741
Force two-norm initial, final = 1921.37 0.684479
Force max component initial, final = 298.456 0.229696
Final line search alpha, max atom move = 0.00501944 0.00115295
Iterations, force evaluations = 365 1305
Pair time (%) = 0.453398 (82.9458)
Neigh time (%) = 0.0260046 (4.75734)
Comm time (%) = 0.00704527 (1.28888)
Outpt time (%) = 0.0170665 (3.12219)
Other time (%) = 0.0431051 (7.88577)
Nlocal: 800 ave 800 max 800 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Nghost: 319 ave 319 max 319 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Neighs: 7040 ave 7040 max 7040 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Total # of neighbors = 7040
Ave neighs/atom = 8.8
Neighbor list builds = 83
Dangerous builds = 0

111
examples/min/log.min.15Jan10.linux.4 Normal file
View File

@ -0,0 +1,111 @@
LAMMPS (15 Jan 2010)
# 2d Lennard-Jones melt and subsequent energy minimization
units lj
dimension 2
atom_style atomic
lattice sq2 0.8442
Lattice spacing in x,y,z = 1.53919 1.53919 1.53919
region box block 0 20 0 20 -0.1 0.1
create_box 1 box
Created orthogonal box = (0 0 -0.153919) to (30.7838 30.7838 0.153919)
2 by 2 by 1 processor grid
create_atoms 1 box
Created 800 atoms
mass 1 1.0
velocity all create 5.0 87287 loop geom
pair_style lj/cut 2.5
pair_coeff 1 1 1.0 1.0 2.5
pair_modify shift yes
neighbor 0.3 bin
neigh_modify delay 0 every 1 check yes
fix 1 all nve
fix 2 all enforce2d
dump 1 all atom 100 dump.min
thermo 100
run 1000
Memory usage per processor = 1.67966 Mbytes
Step Temp E_pair E_mol TotEng Press
0 5 -2.461717 0 2.532033 5.0190509
100 3.2788864 -0.74311698 0 2.5316708 15.912832
200 3.3041082 -0.77000277 0 2.5299752 15.602653
300 3.3840228 -0.84859211 0 2.5312006 15.188203
400 3.3916063 -0.85694601 0 2.5304208 15.383853
500 3.3136052 -0.77935264 0 2.5301106 15.833296
600 3.3888915 -0.85213742 0 2.532518 15.162759
700 3.2123632 -0.67641807 0 2.5319297 16.310592
800 3.3016497 -0.76571656 0 2.531806 15.639198
900 3.4621454 -0.9260857 0 2.531732 14.772965
1000 3.2803075 -0.74465936 0 2.5315477 15.835597
Loop time of 0.59776 on 4 procs for 1000 steps with 800 atoms
Pair time (%) = 0.0661242 (11.062)
Neigh time (%) = 0.0187531 (3.13723)
Comm time (%) = 0.398394 (66.6477)
Outpt time (%) = 0.0209535 (3.50533)
Other time (%) = 0.0935358 (15.6477)
Nlocal: 200 ave 202 max 198 min
Histogram: 1 0 1 0 0 0 0 1 0 1
Nghost: 170.25 ave 176 max 167 min
Histogram: 1 0 2 0 0 0 0 0 0 1
Neighs: 1936.75 ave 1963 max 1896 min
Histogram: 1 0 0 0 0 1 0 0 1 1
Total # of neighbors = 7747
Ave neighs/atom = 9.68375
Neighbor list builds = 203
Dangerous builds = 0
neigh_modify delay 0 every 1 check yes
dump_modify 1 every 25
thermo 50
minimize 1.0e-6 0.001 1000 10000
Memory usage per processor = 2.36658 Mbytes
Step Temp E_pair E_mol TotEng Press
1000 3.2803075 -0.74465936 0 2.5315477 15.835597
1050 3.2803075 -2.8198371 0 0.45636995 1.6553949
1100 3.2803075 -2.8554989 0 0.42070813 1.6571551
1150 3.2803075 -2.8646695 0 0.41153758 1.7045388
1200 3.2803075 -2.8688213 0 0.40738582 1.6922085
1250 3.2803075 -2.8764988 0 0.39970826 1.6948532
1300 3.2803075 -2.8776606 0 0.39854651 1.6821387
1350 3.2803075 -2.8789379 0 0.39726915 1.6715024
1365 3.2803075 -2.879076 0 0.3971311 1.66923
Loop time of 1.00655 on 4 procs for 365 steps with 800 atoms
Minimization stats:
Stopping criterion = energy tolerance
Energy initial, next-to-last, final =
-0.744659361981 -2.87907436106 -2.8790759758
Force two-norm initial, final = 2006.88 0.477401
Force max component initial, final = 395.193 0.0879763
Final line search alpha, max atom move = 0.00334856 0.000294593
Iterations, force evaluations = 365 1437
Pair time (%) = 0.141449 (14.0529)
Neigh time (%) = 0.00708711 (0.704098)
Comm time (%) = 0.485519 (48.2359)
Outpt time (%) = 0.022885 (2.2736)
Other time (%) = 0.349611 (34.7336)
Nlocal: 200 ave 204 max 194 min
Histogram: 1 0 0 0 0 1 0 0 0 2
Nghost: 171.75 ave 173 max 170 min
Histogram: 1 0 0 1 0 0 0 0 0 2
Neighs: 1762.75 ave 1797 max 1711 min
Histogram: 1 0 0 0 0 0 1 1 0 1
Total # of neighbors = 7051
Ave neighs/atom = 8.81375
Neighbor list builds = 78
Dangerous builds = 0

110
examples/min/log.min.7Jul09.linux.1
View File

@ -1,110 +0,0 @@
LAMMPS (7 Jul 2009)
# 2d Lennard-Jones melt and subsequent energy minimization
units lj
dimension 2
atom_style atomic
lattice sq2 0.8442
Lattice spacing in x,y,z = 1.53919 1.53919 1.53919
region box block 0 20 0 20 -0.1 0.1
create_box 1 box
Created orthogonal box = (0 0 -0.153919) to (30.7838 30.7838 0.153919)
1 by 1 by 1 processor grid
create_atoms 1 box
Created 800 atoms
mass 1 1.0
velocity all create 5.0 87287 loop geom
pair_style lj/cut 2.5
pair_coeff 1 1 1.0 1.0 2.5
pair_modify shift yes
neighbor 0.3 bin
neigh_modify delay 0 every 1 check yes
fix 1 all nve
fix 2 all enforce2d
dump 1 all atom 100 dump.min
thermo 100
run 1000
Memory usage per processor = 1.70423 Mbytes
Step Temp E_pair E_mol TotEng Press
0 5 -2.461717 0 2.532033 5.0190509
100 3.2788864 -0.74311698 0 2.5316708 15.912832
200 3.3041082 -0.77000277 0 2.5299752 15.602653
300 3.3840228 -0.84859211 0 2.5312006 15.188203
400 3.3916063 -0.85694601 0 2.5304208 15.383853
500 3.3136052 -0.77935263 0 2.5301106 15.833296
600 3.3888915 -0.85213741 0 2.532518 15.162759
700 3.2123658 -0.67642058 0 2.5319297 16.31058
800 3.3016845 -0.76574803 0 2.5318094 15.639063
900 3.4631643 -0.92710879 0 2.5317266 14.770503
1000 3.3142629 -0.77918518 0 2.5309349 15.655215
Loop time of 0.347681 on 1 procs for 1000 steps with 800 atoms
Pair time (%) = 0.231485 (66.5796)
Neigh time (%) = 0.0640256 (18.4151)
Comm time (%) = 0.00844383 (2.42862)
Outpt time (%) = 0.0124822 (3.59012)
Other time (%) = 0.0312445 (8.98655)
Nlocal: 800 ave 800 max 800 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Nghost: 316 ave 316 max 316 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Neighs: 7741 ave 7741 max 7741 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Total # of neighbors = 7741
Ave neighs/atom = 9.67625
Neighbor list builds = 203
Dangerous builds = 0
neigh_modify delay 0 every 1 check yes
dump_modify 1 every 25
thermo 50
minimize 1.0e-6 0.001 1000 10000
Memory usage per processor = 2.39088 Mbytes
Step Temp E_pair E_mol TotEng Press
1000 3.3142629 -0.77918518 0 2.5309349 15.655215
1050 3.3142629 -2.8174407 0 0.49267933 1.6822296
1100 3.3142629 -2.861848 0 0.44827203 1.6310185
1150 3.3142629 -2.8703989 0 0.4397212 1.6365187
1200 3.3142629 -2.8767671 0 0.433353 1.5906071
1250 3.3142629 -2.8943976 0 0.41572246 1.5744935
1300 3.3142629 -2.9007186 0 0.40940147 1.6309092
1311 3.3142629 -2.9007796 0 0.40934051 1.632784
Loop time of 0.452104 on 1 procs for 311 steps with 800 atoms
Minimization stats:
Stopping criterion = energy tolerance
Energy initial, next-to-last, final =
-0.779185181879 -2.90077747697 -2.90077956617
Force two-norm initial, final = 1916.37 0.588145
Force max component initial, final = 301.855 0.143685
Final line search alpha, max atom move = 0.00336226 0.000483107
Iterations, force evaluations = 311 1065
Pair time (%) = 0.371798 (82.2373)
Neigh time (%) = 0.0210452 (4.65495)
Comm time (%) = 0.00599194 (1.32534)
Outpt time (%) = 0.0146515 (3.24075)
Other time (%) = 0.0386171 (8.54165)
Nlocal: 800 ave 800 max 800 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Nghost: 321 ave 321 max 321 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Neighs: 7027 ave 7027 max 7027 min
Histogram: 1 0 0 0 0 0 0 0 0 0
Total # of neighbors = 7027
Ave neighs/atom = 8.78375
Neighbor list builds = 67
Dangerous builds = 0

108
examples/min/log.min.7Jul09.linux.4
View File

@ -1,108 +0,0 @@
LAMMPS (7 Jul 2009)
# 2d Lennard-Jones melt and subsequent energy minimization
units lj
dimension 2
atom_style atomic
lattice sq2 0.8442
Lattice spacing in x,y,z = 1.53919 1.53919 1.53919
region box block 0 20 0 20 -0.1 0.1
create_box 1 box
Created orthogonal box = (0 0 -0.153919) to (30.7838 30.7838 0.153919)
2 by 2 by 1 processor grid
create_atoms 1 box
Created 800 atoms
mass 1 1.0
velocity all create 5.0 87287 loop geom
pair_style lj/cut 2.5
pair_coeff 1 1 1.0 1.0 2.5
pair_modify shift yes
neighbor 0.3 bin
neigh_modify delay 0 every 1 check yes
fix 1 all nve
fix 2 all enforce2d
dump 1 all atom 100 dump.min
thermo 100
run 1000
Memory usage per processor = 1.67966 Mbytes
Step Temp E_pair E_mol TotEng Press
0 5 -2.461717 0 2.532033 5.0190509
100 3.2788864 -0.74311698 0 2.5316708 15.912832
200 3.3041082 -0.77000277 0 2.5299752 15.602653
300 3.3840228 -0.84859211 0 2.5312006 15.188203
400 3.3916063 -0.85694601 0 2.5304208 15.383853
500 3.3136052 -0.77935264 0 2.5301106 15.833296
600 3.3888915 -0.85213742 0 2.532518 15.162759
700 3.2123644 -0.67641922 0 2.5319297 16.310586
800 3.3016549 -0.7657205 0 2.5318073 15.639175
900 3.4620767 -0.92601725 0 2.5317318 14.773629
1000 3.287472 -0.75213644 0 2.5312262 15.801806
Loop time of 0.502709 on 4 procs for 1000 steps with 800 atoms
Pair time (%) = 0.0661516 (13.159)
Neigh time (%) = 0.0189589 (3.77135)
Comm time (%) = 0.319127 (63.4815)
Outpt time (%) = 0.0204435 (4.06667)
Other time (%) = 0.0780277 (15.5215)
Nlocal: 200 ave 202 max 198 min
Histogram: 1 0 1 0 0 0 0 1 0 1
Nghost: 170.5 ave 177 max 167 min
Histogram: 1 0 2 0 0 0 0 0 0 1
Neighs: 1938 ave 1962 max 1890 min
Histogram: 1 0 0 0 0 0 0 1 0 2
Total # of neighbors = 7752
Ave neighs/atom = 9.69
Neighbor list builds = 203
Dangerous builds = 0
neigh_modify delay 0 every 1 check yes
dump_modify 1 every 25
thermo 50
minimize 1.0e-6 0.001 1000 10000
Memory usage per processor = 2.36658 Mbytes
Step Temp E_pair E_mol TotEng Press
1000 3.287472 -0.75213644 0 2.5312262 15.801806
1050 3.287472 -2.8200167 0 0.46334596 1.6521107
1100 3.287472 -2.856397 0 0.42696564 1.6891734
1150 3.287472 -2.8707025 0 0.41266012 1.6034818
1200 3.287472 -2.8759474 0 0.40741522 1.5849679
1231 3.287472 -2.8763757 0 0.40698689 1.5916795
Loop time of 0.53279 on 4 procs for 231 steps with 800 atoms
Minimization stats:
Stopping criterion = energy tolerance
Energy initial, next-to-last, final =
-0.752136436206 -2.87637373255 -2.87637573409
Force two-norm initial, final = 1981.45 0.83223
Force max component initial, final = 387.785 0.262121
Final line search alpha, max atom move = 0.00568957 0.00149136
Iterations, force evaluations = 231 852
Pair time (%) = 0.0847954 (15.9154)
Neigh time (%) = 0.0049454 (0.928208)
Comm time (%) = 0.244734 (45.9344)
Outpt time (%) = 0.0135967 (2.55197)
Other time (%) = 0.184719 (34.6701)
Nlocal: 200 ave 202 max 196 min
Histogram: 1 0 0 0 0 0 1 0 0 2
Nghost: 169.75 ave 172 max 167 min
Histogram: 1 0 0 0 0 0 2 0 0 1
Neighs: 1764.75 ave 1816 max 1728 min
Histogram: 2 0 0 0 0 0 1 0 0 1
Total # of neighbors = 7059
Ave neighs/atom = 8.82375
Neighbor list builds = 54
Dangerous builds = 0