update URLs in some more files

python/examples/pylammps/interface_usage.ipynb

@@ -13,7 +13,7 @@
    "source": [
     "## Prerequisites\n",
     "\n",
-    "Before running this example, make sure your Python environment can find the LAMMPS shared library (`liblammps.so`) and the LAMMPS Python package is installed. If you followed the [README](README.md) in this folder, this should already be the case. You can also find more information about how to compile LAMMPS and install the LAMMPS Python package in the [LAMMPS manual](https://lammps.sandia.gov/doc/Python_install.html). There is also a dedicated [PyLammps HowTo](https://lammps.sandia.gov/doc/Howto_pylammps.html)."
+    "Before running this example, make sure your Python environment can find the LAMMPS shared library (`liblammps.so`) and the LAMMPS Python package is installed. If you followed the [README](README.md) in this folder, this should already be the case. You can also find more information about how to compile LAMMPS and install the LAMMPS Python package in the [LAMMPS manual](https://docs.lammps.org/Python_install.html). There is also a dedicated [PyLammps HowTo](https://docs.lammps.org/Howto_pylammps.html)."
    ]
   },
   {

python/examples/pylammps/interface_usage_bonds.ipynb

@@ -13,7 +13,7 @@
    "source": [
     "## Prerequisites\n",
     "\n",
-    "Before running this example, make sure your Python environment can find the LAMMPS shared library (`liblammps.so`) and the LAMMPS Python package is installed. If you followed the [README](README.md) in this folder, this should already be the case. You can also find more information about how to compile LAMMPS and install the LAMMPS Python package in the [LAMMPS manual](https://lammps.sandia.gov/doc/Python_install.html). There is also a dedicated [PyLammps HowTo](https://lammps.sandia.gov/doc/Howto_pylammps.html)."
+    "Before running this example, make sure your Python environment can find the LAMMPS shared library (`liblammps.so`) and the LAMMPS Python package is installed. If you followed the [README](README.md) in this folder, this should already be the case. You can also find more information about how to compile LAMMPS and install the LAMMPS Python package in the [LAMMPS manual](https://docs.lammps.org/Python_install.html). There is also a dedicated [PyLammps HowTo](https://docs.lammps.org/Howto_pylammps.html)."
    ]
   },
   {

python/examples/pylammps/simple.ipynb

@@ -20,7 +20,7 @@
    "source": [
     "## Prerequisites\n",
     "\n",
-    "Before Running this example, make sure your Python environment can find the LAMMPS shared library (`liblammps.so`) and the LAMMPS Python package is installed. If you followed the [README](README.md) in this folder, this should already be the case. You can also find more information about how to compile LAMMPS and install the LAMMPS Python package in the [LAMMPS manual](https://lammps.sandia.gov/doc/Python_install.html). There is also a dedicated [PyLammps HowTo](https://lammps.sandia.gov/doc/Howto_pylammps.html)."
+    "Before Running this example, make sure your Python environment can find the LAMMPS shared library (`liblammps.so`) and the LAMMPS Python package is installed. If you followed the [README](README.md) in this folder, this should already be the case. You can also find more information about how to compile LAMMPS and install the LAMMPS Python package in the [LAMMPS manual](https://docs.lammps.org/Python_install.html). There is also a dedicated [PyLammps HowTo](https://docs.lammps.org/Howto_pylammps.html)."
    ]
   },
   {
@@ -111,7 +111,7 @@
    "source": [
     "## Visualizing the initial state\n",
     "\n",
-    "`IPyLammps` allows you to visualize the current simulation state with the [image](https://lammps.sandia.gov/doc/Python_module.html#lammps.IPyLammps.image) command. Here we use it to create an image of the initial state of the system."
+    "`IPyLammps` allows you to visualize the current simulation state with the [image](https://docs.lammps.org/Python_module.html#lammps.IPyLammps.image) command. Here we use it to create an image of the initial state of the system."
    ]
   },
   {

python/lammps/constants.py

@@ -1,6 +1,6 @@
 # ----------------------------------------------------------------------
 #   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
-#   http://lammps.sandia.gov, Sandia National Laboratories
+#   https://www.lammps.org/ Sandia National Laboratories
 #   Steve Plimpton, sjplimp@sandia.gov
 #
 #   Copyright (2003) Sandia Corporation.  Under the terms of Contract

python/lammps/core.py

@@ -1,6 +1,6 @@
 # ----------------------------------------------------------------------
 #   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
-#   http://lammps.sandia.gov, Sandia National Laboratories
+#   https://www.lammps.org/ Sandia National Laboratories
 #   Steve Plimpton, sjplimp@sandia.gov
 #
 #   Copyright (2003) Sandia Corporation.  Under the terms of Contract

python/lammps/data.py

@@ -1,6 +1,6 @@
 # ----------------------------------------------------------------------
 #   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
-#   http://lammps.sandia.gov, Sandia National Laboratories
+#   https://www.lammps.org/ Sandia National Laboratories
 #   Steve Plimpton, sjplimp@sandia.gov
 #
 #   Copyright (2003) Sandia Corporation.  Under the terms of Contract

python/lammps/formats.py

@@ -1,6 +1,6 @@
 # ----------------------------------------------------------------------
 #   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
-#   http://lammps.sandia.gov, Sandia National Laboratories
+#   https://www.lammps.org/ Sandia National Laboratories
 #   Steve Plimpton, sjplimp@sandia.gov
 #
 #   Copyright (2003) Sandia Corporation.  Under the terms of Contract

python/lammps/mliap/loader.py

@@ -1,6 +1,6 @@
 # ----------------------------------------------------------------------
 #   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
-#   http://lammps.sandia.gov, Sandia National Laboratories
+#   https://www.lammps.org/ Sandia National Laboratories
 #   Steve Plimpton, sjplimp@sandia.gov
 #
 #   Copyright (2003) Sandia Corporation.  Under the terms of Contract

python/lammps/mliap/pytorch.py

@@ -1,6 +1,6 @@
 # ----------------------------------------------------------------------
 #   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
-#   http://lammps.sandia.gov, Sandia National Laboratories
+#   https://www.lammps.org/ Sandia National Laboratories
 #   Steve Plimpton, sjplimp@sandia.gov
 #
 #   Copyright (2003) Sandia Corporation.  Under the terms of Contract

python/lammps/numpy_wrapper.py

@@ -1,6 +1,6 @@
 # ----------------------------------------------------------------------
 #   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
-#   http://lammps.sandia.gov, Sandia National Laboratories
+#   https://www.lammps.org/ Sandia National Laboratories
 #   Steve Plimpton, sjplimp@sandia.gov
 #
 #   Copyright (2003) Sandia Corporation.  Under the terms of Contract

python/lammps/pylammps.py

@@ -1,6 +1,6 @@
 # ----------------------------------------------------------------------
 #   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
-#   http://lammps.sandia.gov, Sandia National Laboratories
+#   https://www.lammps.org/ Sandia National Laboratories
 #   Steve Plimpton, sjplimp@sandia.gov
 #
 #   Copyright (2003) Sandia Corporation.  Under the terms of Contract