make overlapping links to references unique to avoid anchor label errors
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@ -75,7 +75,7 @@ equations, but is used in calculating the deviation from the Hugoniot.
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The keyword {beta} is a scaling term that can be added to the MSST
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ionic equations of motion to account for drift in the conserved
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quantity during long timescale simulations, similar to a Berendson
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thermostat. See "(Reed)"_#Reed and "(Goldman)"_#Goldman for more
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thermostat. See "(Reed)"_#Reed and "(Goldman)"_#Goldman2 for more
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details. The value of {beta} must be between 0.0 and 1.0 inclusive.
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A value of 0.0 means no contribution, a value of 1.0 means a full
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contribution.
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@ -108,7 +108,7 @@ being driven by DFTB+, a density-functional tight-binding code. If the
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keyword {dftb} is used with a value of {yes}, then the MSST equations
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are altered to account for the electron entropy contribution to the
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Hugonio relations and total energy. See "(Reed2)"_#Reed2 and
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"(Goldman)"_#Goldman for details on this contribution. In this case,
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"(Goldman)"_#Goldman2 for details on this contribution. In this case,
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you must define a "fix external"_fix_external.html command in your
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input script, which is used to callback to DFTB+ during the LAMMPS
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timestepping. DFTB+ will communicate its info to LAMMPS via that fix.
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@ -188,6 +188,6 @@ timestep.
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:link(Reed2)
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[(Reed2)] Reed, J. Phys. Chem. C, 116, 2205 (2012).
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:link(Goldman)
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:link(Goldman2)
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[(Goldman)] Goldman, Srinivasan, Hamel, Fried, Gaus, and Elstner,
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J. Phys. Chem. C, 117, 7885 (2013).
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@ -78,7 +78,7 @@ especially when the temperature of the initial state is below the
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classical limit or there is a great change in the zero point energies
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between the initial and final states. Theoretical post processing
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quantum corrections of shock compressed water and methane have been
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reported as much as 30% of the temperatures "(Goldman)"_#Goldman. A
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reported as much as 30% of the temperatures "(Goldman)"_#Goldman1. A
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self-consistent method that couples the shock to a quantum thermal
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bath described by a colored noise Langevin thermostat has been
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developed by Qi et al "(Qi)"_#Qi and applied to shocked methane. The
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@ -212,7 +212,7 @@ T_init=300.0. e0, p0, and v0 are calculated on the first step.
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:line
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:link(Goldman)
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:link(Goldman1)
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[(Goldman)] Goldman, Reed and Fried, J. Chem. Phys. 131, 204103 (2009)
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:link(Qi)
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