Merge pull request #3285 from akohlmey/clang-format-clang-tidy

Apply clang-tidy and clang-format to update/modernize/simplify recently modified code
This commit is contained in:
Axel Kohlmeyer
2022-06-01 19:04:43 -04:00
committed by GitHub
22 changed files with 162 additions and 150 deletions

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@ -117,7 +117,7 @@ void colvarproxy_lammps::init(const char *conf_file)
if (_lmp->update->ntimestep != 0) {
cvm::log("Setting initial step number from LAMMPS: "+
cvm::to_str(_lmp->update->ntimestep)+"\n");
colvars->it = colvars->it_restart =
colvarmodule::it = colvarmodule::it_restart =
static_cast<cvm::step_number>(_lmp->update->ntimestep);
}
@ -174,7 +174,7 @@ double colvarproxy_lammps::compute()
} else {
// Use the time step number from LAMMPS Update object
if (_lmp->update->ntimestep - previous_step == 1) {
colvars->it++;
colvarmodule::it++;
b_simulation_continuing = false;
} else {
// Cases covered by this condition:
@ -209,7 +209,7 @@ double colvarproxy_lammps::compute()
if (cvm::debug()) {
cvm::log(std::string(cvm::line_marker)+
"colvarproxy_lammps, step no. "+cvm::to_str(colvars->it)+"\n"+
"colvarproxy_lammps, step no. "+cvm::to_str(colvarmodule::it)+"\n"+
"Updating internal data.\n");
}
@ -269,7 +269,7 @@ cvm::rvector colvarproxy_lammps::position_distance(cvm::atom_pos const &pos1,
double ytmp = pos2.y - pos1.y;
double ztmp = pos2.z - pos1.z;
_lmp->domain->minimum_image(xtmp,ytmp,ztmp);
return cvm::rvector(xtmp, ytmp, ztmp);
return {xtmp, ytmp, ztmp};
}

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@ -135,8 +135,6 @@ static void rebuild_table_int(inthash_t *tptr) {
/* free memory used by old table */
free(old_bucket);
return;
}
/*
@ -166,8 +164,6 @@ void inthash_init(inthash_t *tptr, int buckets) {
/* allocate memory for table */
tptr->bucket=(inthash_node_t **) calloc(tptr->size, sizeof(inthash_node_t *));
return;
}
/*
@ -847,7 +843,6 @@ void FixColvars::post_force_respa(int vflag, int ilevel, int /*iloop*/)
{
/* only process colvar forces on the outmost RESPA level. */
if (ilevel == nlevels_respa-1) post_force(vflag);
return;
}
/* ---------------------------------------------------------------------- */
@ -939,7 +934,7 @@ void FixColvars::end_of_step()
void FixColvars::write_restart(FILE *fp)
{
if (me == 0) {
std::string rest_text("");
std::string rest_text;
proxy->serialize_status(rest_text);
// TODO call write_output_files()
const char *cvm_state = rest_text.c_str();

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@ -76,7 +76,7 @@ void Ndx2Group::command(int narg, char **arg)
int len;
bigint num;
FILE *fp;
std::string name = "", next;
std::string name, next;
if (narg < 1) error->all(FLERR,"Illegal ndx2group command");
if (atom->tag_enable == 0)

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@ -40,7 +40,7 @@ using namespace MathConst;
/* ---------------------------------------------------------------------- */
EwaldElectrode::EwaldElectrode(LAMMPS *lmp) : Ewald(lmp), ElectrodeKSpace()
EwaldElectrode::EwaldElectrode(LAMMPS *lmp) : Ewald(lmp)
{
eikr_step = -1;
}

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@ -65,8 +65,7 @@ enum { FORWARD_IK, FORWARD_AD, FORWARD_IK_PERATOM, FORWARD_AD_PERATOM };
/* ---------------------------------------------------------------------- */
PPPMElectrode::PPPMElectrode(LAMMPS *lmp) :
PPPM(lmp), ElectrodeKSpace(), electrolyte_density_brick(nullptr),
electrolyte_density_fft(nullptr)
PPPM(lmp), electrolyte_density_brick(nullptr), electrolyte_density_fft(nullptr)
{
group_group_enable = 0;
electrolyte_density_brick = nullptr;