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change pseudo external link to internal link. provide links to the command subpages

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This commit is contained in:
Axel Kohlmeyer
2020-02-22 18:41:36 -05:00
parent ac639fe629
commit 31165082c1
3 changed files with 14 additions and 13 deletions
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1
doc/src/Manual.rst
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@ -36,7 +36,6 @@ Once you are familiar with LAMMPS, you may want to bookmark :doc:`this page <Com
every LAMMPS command.
.. _lws: http://lammps.sandia.gov
.. _lc: Commands_all.html
.. toctree::
:maxdepth: 2

22
doc/src/Packages_details.rst
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@ -24,8 +24,6 @@ page gives those details.
pair, bond, angle, etc correspond to commands with the same style name
as contained in the file name.
.. _lc: Commands_all.html
.. table_from_list::
:columns: 6
@ -338,7 +336,8 @@ This package has :ref:`specific installation instructions <gpu>` on the :doc:`Bu
* :doc:`Section 2.6 -sf gpu <Run_options>`
* :doc:`Section 2.6 -pk gpu <Run_options>`
* :doc:`package gpu <package>`
* `Commands all <lc_>`_ pages (pair,kspace) for styles followed by (g)
* :doc:`Commands <Commands_all>` pages (:doc:`pair <Commands_pair>`, :doc:`kspace <Commands_kspace>`)
for styles followed by (g)
* `Benchmarks page <http://lammps.sandia.gov/bench.html>`_ of web site
@ -481,7 +480,9 @@ This package has :ref:`specific installation instructions <kokkos>` on the :doc:
* :doc:`Section 2.6 -sf kk <Run_options>`
* :doc:`Section 2.6 -pk kokkos <Run_options>`
* :doc:`package kokkos <package>`
* `Commands all <lc_>`_ pages (fix,compute,pair,etc) for styles followed by (k)
* Search the :doc:`commands <Commands_all>` pages (:doc:`fix <Commands_fix>`, :doc:`compute <Commands_compute>`,
:doc:`pair <Commands_pair>`, :doc:`bond, angle, dihedral, improper <Commands_bond>`,
:doc:`kspace <Commands_kspace>`) for styles followed by (k)
* `Benchmarks page <http://lammps.sandia.gov/bench.html>`_ of web site
@ -517,7 +518,7 @@ different FFT options for your LAMPMS build.
* :doc:`Howto tip4p <Howto_tip4p>`
* :doc:`Howto spc <Howto_spc>`
* :doc:`pair_style coul <pair_coul>`
* :doc:`Commands pair <Commands_pair>` page for styles with "long" or "msm" in name
* Search the :doc:`pair style <Commands_pair>` page for styles with "long" or "msm" in name
* examples/peptide
* bench/in.rhodo
@ -578,7 +579,7 @@ A variety of many-body and bond-order potentials. These include
**Supporting info:**
* src/MANYBODY: filenames -> commands
* :doc:`Commands pair <Commands_pair>` page
* :doc:`Pair style <Commands_pair>` page
* examples/comb
* examples/eim
* examples/nb3d
@ -803,7 +804,7 @@ This package has :ref:`specific installation instructions <opt>` on the :doc:`Bu
* :doc:`Speed packages <Speed_packages>`
* :doc:`Speed opt <Speed_opt>`
* :doc:`Section 2.6 -sf opt <Run_options>`
* :doc:`Commands pair <Commands_pair>` for styles followed by (t)
* Search the :doc:`pair style <Commands_pair>` page for styles followed by (t)
* `Benchmarks page <http://lammps.sandia.gov/bench.html>`_ of web site
@ -1641,7 +1642,8 @@ This package has :ref:`specific installation instructions <user-intel>` on the :
* :doc:`Section 2.6 -sf intel <Run_options>`
* :doc:`Section 2.6 -pk intel <Run_options>`
* :doc:`package intel <package>`
* `Commands all <lc_>`_ pages (fix,compute,pair,etc) for styles followed by (i)
* Search the :doc:`commands <Commands_all>` pages (:doc:`fix <Commands_fix>`, :doc:`compute <Commands_compute>`,
:doc:`pair <Commands_pair>`, :doc:`bond, angle, dihedral, improper <Commands_bond>`, :doc:`kspace <Commands_kspace>`) for styles followed by (i)
* src/USER-INTEL/TEST
* `Benchmarks page <http://lammps.sandia.gov/bench.html>`_ of web site
@ -2001,7 +2003,9 @@ This package has :ref:`specific installation instructions <user-omp>` on the :do
* :doc:`Section 2.6 -sf omp <Run_options>`
* :doc:`Section 2.6 -pk omp <Run_options>`
* :doc:`package omp <package>`
* `Commands all <lc_>`_ pages (fix,compute,pair,etc) for styles followed by (o)
* Search the :doc:`commands <Commands_all>` pages (:doc:`fix <Commands_fix>`, :doc:`compute <Commands_compute>`,
:doc:`pair <Commands_pair>`, :doc:`bond, angle, dihedral, improper <Commands_bond>`,
:doc:`kspace <Commands_kspace>`) for styles followed by (o)
* `Benchmarks page <http://lammps.sandia.gov/bench.html>`_ of web site

4
doc/src/Speed_packages.rst
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@ -37,8 +37,6 @@ standard or user packages:
Speed_omp
Speed_opt
.. _lc: Commands_all.html
Inverting this list, LAMMPS currently has acceleration support for
three kinds of hardware, via the listed packages:
@ -72,7 +70,7 @@ Lennard-Jones :doc:`pair_style lj/cut <pair_lj>`:
* :doc:`pair_style lj/cut/opt <pair_lj>`
To see what accelerate styles are currently available for a particular
style, find the style name in the `Commands\_all <lc_>`_
style, find the style name in the :doc:`Commands <Commands_all>`
style pages (fix,compute,pair,etc) and see what suffixes are listed
(g,i,k,o,t) with it. The doc pages for individual commands
(e.g. :doc:`pair lj/cut <pair_lj>` or :doc:`fix nve <fix_nve>`) also list