diff --git a/doc/src/Eqs/bond_morse.jpg b/doc/src/Eqs/bond_morse.jpg deleted file mode 100644 index 6795c9e527..0000000000 Binary files a/doc/src/Eqs/bond_morse.jpg and /dev/null differ diff --git a/doc/src/Eqs/bond_morse.tex b/doc/src/Eqs/bond_morse.tex deleted file mode 100644 index a0d7a89961..0000000000 --- a/doc/src/Eqs/bond_morse.tex +++ /dev/null @@ -1,10 +0,0 @@ -\documentclass[12pt]{article} - -\begin{document} - -$$ -% E = D \left[ 1 - \exp \left( -\alpha (r - r_0) \right) \right]^2 - E = D \left[ 1 - e^{-\alpha (r - r_0)} \right]^2 -$$ - -\end{document} \ No newline at end of file diff --git a/doc/src/bond_morse.rst b/doc/src/bond_morse.rst index 592bc527c3..26471424c5 100644 --- a/doc/src/bond_morse.rst +++ b/doc/src/bond_morse.rst @@ -1,16 +1,16 @@ -.. index:: bond\_style morse +.. index:: bond_style morse -bond\_style morse command -========================= +bond_style morse command +======================== -bond\_style morse/omp command -============================= +bond_style morse/omp command +============================ Syntax """""" -.. parsed-literal:: +.. code-block:: LAMMPS bond_style morse @@ -18,7 +18,7 @@ Examples """""""" -.. parsed-literal:: +.. code-block:: LAMMPS bond_style morse bond_coeff 5 1.0 2.0 1.2 @@ -28,20 +28,22 @@ Description The *morse* bond style uses the potential -.. image:: Eqs/bond_morse.jpg - :align: center +.. math:: -where r0 is the equilibrium bond distance, alpha is a stiffness -parameter, and D determines the depth of the potential well. + E = D \left[ 1 - e^{-\alpha (r - r_0)} \right]^2 + + +where :math:`r_0` is the equilibrium bond distance, :math:`\alpha` is a stiffness +parameter, and :math:`D` determines the depth of the potential well. The following coefficients must be defined for each bond type via the :doc:`bond\_coeff ` command as in the example above, or in the data file or restart files read by the :doc:`read\_data ` or :doc:`read\_restart ` commands: -* D (energy) -* alpha (inverse distance) -* r0 (distance) +* :math:`D` (energy) +* :math:`\alpha` (inverse distance) +* :math:`r_0` (distance) ---------- @@ -83,8 +85,3 @@ Related commands :doc:`bond\_coeff `, :doc:`delete\_bonds ` **Default:** none - - -.. _lws: http://lammps.sandia.gov -.. _ld: Manual.html -.. _lc: Commands_all.html diff --git a/doc/txt/bond_morse.txt b/doc/txt/bond_morse.txt deleted file mode 100644 index 60fd16e17a..0000000000 --- a/doc/txt/bond_morse.txt +++ /dev/null @@ -1,73 +0,0 @@ -"LAMMPS WWW Site"_lws - "LAMMPS Documentation"_ld - "LAMMPS Commands"_lc :c - -:link(lws,http://lammps.sandia.gov) -:link(ld,Manual.html) -:link(lc,Commands_all.html) - -:line - -bond_style morse command :h3 -bond_style morse/omp command :h3 - -[Syntax:] - -bond_style morse :pre - -[Examples:] - -bond_style morse -bond_coeff 5 1.0 2.0 1.2 :pre - -[Description:] - -The {morse} bond style uses the potential - -:c,image(Eqs/bond_morse.jpg) - -where r0 is the equilibrium bond distance, alpha is a stiffness -parameter, and D determines the depth of the potential well. - -The following coefficients must be defined for each bond type via the -"bond_coeff"_bond_coeff.html command as in the example above, or in -the data file or restart files read by the "read_data"_read_data.html -or "read_restart"_read_restart.html commands: - -D (energy) -alpha (inverse distance) -r0 (distance) :ul - -:line - -Styles with a {gpu}, {intel}, {kk}, {omp}, or {opt} suffix are -functionally the same as the corresponding style without the suffix. -They have been optimized to run faster, depending on your available -hardware, as discussed on the "Speed packages"_Speed_packages.html doc -page. The accelerated styles take the same arguments and should -produce the same results, except for round-off and precision issues. - -These accelerated styles are part of the GPU, USER-INTEL, KOKKOS, -USER-OMP and OPT packages, respectively. They are only enabled if -LAMMPS was built with those packages. See the "Build -package"_Build_package.html doc page for more info. - -You can specify the accelerated styles explicitly in your input script -by including their suffix, or you can use the "-suffix command-line -switch"_Run_options.html when you invoke LAMMPS, or you can use the -"suffix"_suffix.html command in your input script. - -See the "Speed packages"_Speed_packages.html doc page for more -instructions on how to use the accelerated styles effectively. - -:line - -[Restrictions:] - -This bond style can only be used if LAMMPS was built with the MOLECULE -package. See the "Build package"_Build_package.html doc page for more -info. - -[Related commands:] - -"bond_coeff"_bond_coeff.html, "delete_bonds"_delete_bonds.html - -[Default:] none