From 35db9c4ddb0bc2bb855cabf0cc1f015f44134bd2 Mon Sep 17 00:00:00 2001
From: sjplimp <sjplimp@f3b2605a-c512-4ea7-a41b-209d697bcdaa>
Date: Mon, 1 Aug 2011 14:07:27 +0000
Subject: [PATCH] git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@6574
 f3b2605a-c512-4ea7-a41b-209d697bcdaa

---
 doc/Section_start.html | 19 ++++++++++++++-----
 doc/Section_start.txt  | 19 ++++++++++++++-----
 doc/pair_meam.html     |  8 ++++----
 doc/pair_meam.txt      |  8 ++++----
 4 files changed, 36 insertions(+), 18 deletions(-)

diff --git a/doc/Section_start.html b/doc/Section_start.html
index 8977275e3c..2fb42855b8 100644
--- a/doc/Section_start.html
+++ b/doc/Section_start.html
@@ -142,13 +142,19 @@ gmake -f Makefile.list mac
 the file names in your src dir.  The 2nd "make" command (make or
 gmake) will use it to build LAMMPS.
 </P>
-<P>(2) Other errors typically occur because the low-level Makefile isn't
+<P>(2) If you get an error that says something like 'identifier "atoll"
+is undefined', then your machine does not support "long long"
+integers, and you need to edit the src/lmptype.h file.  There is a
+comment in the file about what to do.  Basically you replace
+MPI_LONG_LONG with MPI_LONG and atoll with atol.
+</P>
+<P>(3) Other errors typically occur because the low-level Makefile isn't
 setup correctly for your machine.  If your platform is named "foo",
 you will need to create a Makefile.foo in the MAKE sub-directory.  Use
 whatever existing file is closest to your platform as a starting
 point.  See the next section for more instructions.
 </P>
-<P>(3) If you get a link-time error about missing libraries or missing
+<P>(4) If you get a link-time error about missing libraries or missing
 dependencies, then it can be because:
 </P>
 <UL><LI>you are including a package that needs an extra library, but have not pre-built the necessary <A HREF = "#2_3_3">package library</A>
@@ -191,9 +197,12 @@ dependency list for a source file.  This speeds re-compilation when
 source (*.cpp) or header (*.h) files are edited.  Some compilers do
 not support dependency file creation, or may use a different switch
 than -D.  GNU g++ works with -D.  If your compiler can't create
-dependency files (a long list of errors involving *.d files), then
-you'll need to create a Makefile.foo patterned after Makefile.storm,
-which uses different rules that do not involve dependency files.
+dependency files, then you'll need to create a Makefile.foo patterned
+after Makefile.storm, which uses different rules that do not involve
+dependency files.  Note that when you build LAMMPS for the first time
+on a new platform, a long list of *.d files will be printed out
+rapidly.  This is not an error; it is the Makefile doing its normal
+creation of dependencies.
 </P>
 <P>(3) The "system-specific settings" section has 5 parts.
 </P>
diff --git a/doc/Section_start.txt b/doc/Section_start.txt
index 303366ec84..730e740608 100644
--- a/doc/Section_start.txt
+++ b/doc/Section_start.txt
@@ -137,13 +137,19 @@ The first "make" command will create a current Makefile.list with all
 the file names in your src dir.  The 2nd "make" command (make or
 gmake) will use it to build LAMMPS.
 
-(2) Other errors typically occur because the low-level Makefile isn't
+(2) If you get an error that says something like 'identifier "atoll"
+is undefined', then your machine does not support "long long"
+integers, and you need to edit the src/lmptype.h file.  There is a
+comment in the file about what to do.  Basically you replace
+MPI_LONG_LONG with MPI_LONG and atoll with atol.
+
+(3) Other errors typically occur because the low-level Makefile isn't
 setup correctly for your machine.  If your platform is named "foo",
 you will need to create a Makefile.foo in the MAKE sub-directory.  Use
 whatever existing file is closest to your platform as a starting
 point.  See the next section for more instructions.
 
-(3) If you get a link-time error about missing libraries or missing
+(4) If you get a link-time error about missing libraries or missing
 dependencies, then it can be because:
 
 you are including a package that needs an extra library, but have not pre-built the necessary "package library"_#2_3_3
@@ -186,9 +192,12 @@ dependency list for a source file.  This speeds re-compilation when
 source (*.cpp) or header (*.h) files are edited.  Some compilers do
 not support dependency file creation, or may use a different switch
 than -D.  GNU g++ works with -D.  If your compiler can't create
-dependency files (a long list of errors involving *.d files), then
-you'll need to create a Makefile.foo patterned after Makefile.storm,
-which uses different rules that do not involve dependency files.
+dependency files, then you'll need to create a Makefile.foo patterned
+after Makefile.storm, which uses different rules that do not involve
+dependency files.  Note that when you build LAMMPS for the first time
+on a new platform, a long list of *.d files will be printed out
+rapidly.  This is not an error; it is the Makefile doing its normal
+creation of dependencies.
 
 (3) The "system-specific settings" section has 5 parts.
 
diff --git a/doc/pair_meam.html b/doc/pair_meam.html
index 9fe245a95a..f80c4331d9 100644
--- a/doc/pair_meam.html
+++ b/doc/pair_meam.html
@@ -231,11 +231,11 @@ erose_form      = integer value to select the form of the Rose energy function
                     default = 0
 emb_lin_neg     = integer value to select embedding function for negative densities
                     0 = F(rho)=0
-                    1 = F(rho)=-asub*esub*rho (linear in rho, matches DYNAMO)
+                    1 = F(rho) = -asub*esub*rho (linear in rho, matches DYNAMO)
                     default = 0
-bkg_dyn         = integer value to select background density formula
-                    0 = rho_bkgd=rho_ref_meam(a) (as in the reference structure)
-                    1 = rho_bkgd=rho0_meam(a)*Z_meam(a) (matches DYNAMO)
+bkgd_dyn        = integer value to select background density formula
+                    0 = rho_bkgd = rho_ref_meam(a) (as in the reference structure)
+                    1 = rho_bkgd = rho0_meam(a)*Z_meam(a) (matches DYNAMO)
                     default = 0 
 </PRE>
 <P>Rc, delr, re are in distance units (Angstroms in the case of metal
diff --git a/doc/pair_meam.txt b/doc/pair_meam.txt
index 0ddec592fa..cb7568a6a8 100644
--- a/doc/pair_meam.txt
+++ b/doc/pair_meam.txt
@@ -228,11 +228,11 @@ erose_form      = integer value to select the form of the Rose energy function
                     default = 0
 emb_lin_neg     = integer value to select embedding function for negative densities
                     0 = F(rho)=0
-                    1 = F(rho)=-asub*esub*rho (linear in rho, matches DYNAMO)
+                    1 = F(rho) = -asub*esub*rho (linear in rho, matches DYNAMO)
                     default = 0
-bkg_dyn         = integer value to select background density formula
-                    0 = rho_bkgd=rho_ref_meam(a) (as in the reference structure)
-                    1 = rho_bkgd=rho0_meam(a)*Z_meam(a) (matches DYNAMO)
+bkgd_dyn        = integer value to select background density formula
+                    0 = rho_bkgd = rho_ref_meam(a) (as in the reference structure)
+                    1 = rho_bkgd = rho0_meam(a)*Z_meam(a) (matches DYNAMO)
                     default = 0 :pre
 
 Rc, delr, re are in distance units (Angstroms in the case of metal