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git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@6531 f3b2605a-c512-4ea7-a41b-209d697bcdaa

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sjplimp
2011-07-14 19:37:37 +00:00
parent abdbd72db9
commit 37ca8446ee
6 changed files with 11 additions and 7 deletions
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4
doc/Section_start.html
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@ -172,7 +172,7 @@ section, and the "system-specific settings" section.
the "#", and whatever other options you set. This is the line you
will see if you just type "make".
</P>
<P>(3) The "compiler/linker settings" section lists compiler and linker
<P>(2) The "compiler/linker settings" section lists compiler and linker
settings for your C++ compiler, including optimization flags. You can
use g++, the open-source GNU compiler, which is available on all Unix
systems. You can also use mpicc which will typically be available if
@ -195,7 +195,7 @@ dependency files (a long list of errors involving *.d files), then
you'll need to create a Makefile.foo patterned after Makefile.storm,
which uses different rules that do not involve dependency files.
</P>
<P>(3) The "system-specific settings" section has 4 parts.
<P>(3) The "system-specific settings" section has 5 parts.
</P>
<P>(3.a) The LMP_INC variable is used to include options that turn on
system-dependent ifdefs within the LAMMPS code. The settings

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doc/Section_start.txt
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@ -167,7 +167,7 @@ section, and the "system-specific settings" section.
the "#", and whatever other options you set. This is the line you
will see if you just type "make".
(3) The "compiler/linker settings" section lists compiler and linker
(2) The "compiler/linker settings" section lists compiler and linker
settings for your C++ compiler, including optimization flags. You can
use g++, the open-source GNU compiler, which is available on all Unix
systems. You can also use mpicc which will typically be available if
@ -190,7 +190,7 @@ dependency files (a long list of errors involving *.d files), then
you'll need to create a Makefile.foo patterned after Makefile.storm,
which uses different rules that do not involve dependency files.
(3) The "system-specific settings" section has 4 parts.
(3) The "system-specific settings" section has 5 parts.
(3.a) The LMP_INC variable is used to include options that turn on
system-dependent ifdefs within the LAMMPS code. The settings

3
doc/compute_event_displace.html
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@ -41,7 +41,8 @@ further than the threshold distance.
due to thermal motion, an external force, or an initial net momentum,
then this compute will not be able to distinguish that motion from
local atom displacements and may generate "false postives."
<B>Output info:</B>
</P>
<P><B>Output info:</B>
</P>
<P>This compute calculates a global scalar (the flag). This value can be
used by any command that uses a global scalar value from a compute as

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doc/compute_event_displace.txt
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@ -38,6 +38,7 @@ NOTE: If the system is undergoing significant center-of-mass motion,
due to thermal motion, an external force, or an initial net momentum,
then this compute will not be able to distinguish that motion from
local atom displacements and may generate "false postives."
[Output info:]
This compute calculates a global scalar (the flag). This value can be

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doc/dump_image.html
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@ -435,7 +435,8 @@ details.
</P>
<P>The defaults for the keywords are as follows:
</P>
<UL><LI>atom = type 1.0
<UL><LI>adiam = not specified (use diameter setting)
<LI>atom = yes
<LI>bond = none none (if no bonds in system)
<LI>bond = atom 0.5 (if bonds in system)
<LI>size = 512 512

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doc/dump_image.txt
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@ -421,7 +421,8 @@ details.
The defaults for the keywords are as follows:
atom = type 1.0
adiam = not specified (use diameter setting)
atom = yes
bond = none none (if no bonds in system)
bond = atom 0.5 (if bonds in system)
size = 512 512