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@ -5,7 +5,7 @@ units metal
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atom_style atomic
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atom_modify map array
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boundary p p p
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atom_modify sort 0 0.0
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atom_modify sort 0 0.0
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# coordination number cutoff
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@ -45,7 +45,7 @@ group Si type 1
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group del id 300
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delete_atoms group del compress no
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group vacneigh id 174 175 301 304 306 331 337
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# choose potential
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pair_style sw
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@ -53,26 +53,26 @@ pair_coeff * * Si.sw Si
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# set up neb run
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variable u uloop 20
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# only output atoms near vacancy
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variable u uloop 20
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# initial minimization to relax vacancy
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displace_atoms all random 0.1 0.1 0.1 123456
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minimize 1.0e-6 1.0e-4 1000 10000
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minimize 1.0e-6 1.0e-4 1000 10000
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reset_timestep 0
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# only output atoms near vacancy
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#dump events vacneigh custom 1000 dump.neb.sivac.$u id type x y z
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fix 1 all neb 1.0
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fix 1 all neb 1.0
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thermo 100
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thermo 100
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# run NEB for 2000 steps or to force tolerance
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timestep 0.01
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min_style quickmin
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min_style quickmin
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neb 0.0 0.01 100 100 10 final final.sivac
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neb 0.0 0.01 100 100 10 final final.sivac
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