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This commit is contained in:
Axel Kohlmeyer
2022-08-09 16:50:16 -04:00
parent 6eb51a68d9
commit 3a4a0078cd
4 changed files with 113 additions and 113 deletions

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@ -5,7 +5,7 @@ units metal
atom_style atomic
atom_modify map array
boundary p p p
atom_modify sort 0 0.0
atom_modify sort 0 0.0
# coordination number cutoff
@ -45,7 +45,7 @@ group Si type 1
group del id 300
delete_atoms group del compress no
group vacneigh id 174 175 301 304 306 331 337
# choose potential
pair_style sw
@ -53,26 +53,26 @@ pair_coeff * * Si.sw Si
# set up neb run
variable u uloop 20
# only output atoms near vacancy
variable u uloop 20
# initial minimization to relax vacancy
displace_atoms all random 0.1 0.1 0.1 123456
minimize 1.0e-6 1.0e-4 1000 10000
minimize 1.0e-6 1.0e-4 1000 10000
reset_timestep 0
# only output atoms near vacancy
#dump events vacneigh custom 1000 dump.neb.sivac.$u id type x y z
fix 1 all neb 1.0
fix 1 all neb 1.0
thermo 100
thermo 100
# run NEB for 2000 steps or to force tolerance
timestep 0.01
min_style quickmin
min_style quickmin
neb 0.0 0.01 100 100 10 final final.sivac
neb 0.0 0.01 100 100 10 final final.sivac