Merge branch 'develop' into bond-harmonic-restrain

doc/utils/check-packages.py

@@ -49,7 +49,9 @@ pkgs = []
 # folder, and is not called 'MAKE' is a package 
 
 for d in pkgdirs:
-    pkg = dirs.match(d).group(1)
+    match = dirs.match(d)
+    if not match: continue
+    pkg = match.group(1)
     if not os.path.isdir(os.path.join(src_dir, pkg)): continue
     if pkg in ['DEPEND','MAKE','STUBS']: continue
     pkgs.append(pkg)

doc/utils/sphinx-config/false_positives.txt

@@ -1,5 +1,6 @@
 aa
 aat
+Abascal
 abc
 abf
 ABI
@@ -437,6 +438,7 @@ cfile
 CFL
 cgdna
 CGDNA
+cgmap
 cgs
 cgsdk
 CGSDK
@@ -1442,6 +1444,7 @@ hux
 hwloc
 hx
 hy
+hydronium
 hydrophobicity
 hydrostatic
 hydrostatically
@@ -1791,6 +1794,7 @@ lammps
 Lammps
 LAMMPS
 lammpsbin
+lammpsdata
 lammpsplot
 lammpsplugin
 Lamoureux
@@ -1985,6 +1989,7 @@ magelec
 Maginn
 magneton
 magnetons
+Mahoney
 mainboard
 mainboards
 makefile
@@ -2070,6 +2075,7 @@ mdi
 MDI
 mdpd
 mDPD
+mdtraj
 meam
 MEAM
 meamf
@@ -3187,6 +3193,7 @@ Sandia
 sandybrown
 sanitizer
 Sanyal
+Sanz
 Sarath
 sc
 scafacos