apply include statement updates suggested by running IWYU

This commit is contained in:
Axel Kohlmeyer
2022-02-13 18:21:03 -05:00
parent 1307371942
commit 3bc91386a0
86 changed files with 48 additions and 132 deletions

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@ -31,7 +31,6 @@
#include "update.h"
#include <cmath>
#include <ctime>
using namespace LAMMPS_NS;

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@ -17,9 +17,7 @@
#include "comm.h"
#include "error.h"
#include "force.h"
#include "group.h"
#include "memory.h"
#include "modify.h"
#include "neigh_list.h"
#include "neigh_request.h"
#include "neighbor.h"
@ -27,7 +25,6 @@
#include "update.h"
#include "math_const.h"
#include <cmath>
#include <cstring>
using namespace LAMMPS_NS;

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@ -35,6 +35,7 @@
#include <cmath>
#include <cstring>
#include <exception>
using namespace LAMMPS_NS;
using namespace FixConst;

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@ -31,6 +31,7 @@
#include <cmath>
#include <cstring>
#include <exception>
using namespace LAMMPS_NS;
using namespace FixConst;

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@ -33,8 +33,6 @@
#include "respa.h"
#include "update.h"
#include <cstring>
using namespace LAMMPS_NS;
using namespace FixConst;

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@ -32,6 +32,7 @@
#include <cmath>
#include <cstring>
#include <exception>
using namespace LAMMPS_NS;
using namespace FixConst;

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@ -21,7 +21,6 @@ FixStyle(ttm,FixTTM);
#define LMP_FIX_TTM_H
#include "fix.h"
#include <exception>
namespace LAMMPS_NS {

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@ -31,11 +31,11 @@
#include "random_mars.h"
#include "respa.h"
#include "potential_file_reader.h"
#include "tokenizer.h"
#include "update.h"
#include <cmath>
#include <cstring>
#include <exception>
using namespace LAMMPS_NS;
using namespace FixConst;

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@ -21,7 +21,6 @@ FixStyle(ttm/mod,FixTTMMod);
#define LMP_FIX_TTM_MOD_H
#include "fix.h"
#include <exception>
namespace LAMMPS_NS {

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@ -17,7 +17,6 @@
#include "comm.h"
#include "error.h"
#include "force.h"
#include "math_const.h"
#include "memory.h"
#include "neighbor.h"
#include "update.h"

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@ -24,8 +24,6 @@
#include "math_const.h"
#include "memory.h"
#include "neigh_list.h"
#include "neighbor.h"
#include "update.h"
#include <cmath>
#include <cstring>

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@ -19,16 +19,11 @@
#include "pair_nm_cut_split.h"
#include "atom.h"
#include "comm.h"
#include "error.h"
#include "force.h"
#include "math_const.h"
#include "math_special.h"
#include "memory.h"
#include "neigh_list.h"
#include <cmath>
#include <cstring>
using namespace LAMMPS_NS;
using MathSpecial::powint;

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@ -34,7 +34,6 @@
#include "neigh_request.h"
#include "neighbor.h"
#include "potential_file_reader.h"
#include "tokenizer.h"
#include <cmath>
#include <cstring>

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@ -31,7 +31,6 @@
#include "neighbor.h"
#include "neigh_list.h"
#include "potential_file_reader.h"
#include "tokenizer.h"
#include <cmath>
#include <cstring>

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@ -33,7 +33,6 @@
#include "neighbor.h"
#include "neigh_list.h"
#include "potential_file_reader.h"
#include "tokenizer.h"
#include <cmath>
#include <cstring>

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@ -29,7 +29,6 @@
#include "neigh_request.h"
#include "neighbor.h"
#include "potential_file_reader.h"
#include "tokenizer.h"
#include <cmath>
#include <cstring>

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@ -19,20 +19,18 @@
#include "pair_adp.h"
#include <cmath>
#include <cstring>
#include "atom.h"
#include "force.h"
#include "comm.h"
#include "error.h"
#include "force.h"
#include "memory.h"
#include "neighbor.h"
#include "neigh_list.h"
#include "memory.h"
#include "error.h"
#include "tokenizer.h"
#include "potential_file_reader.h"
#include <cmath>
#include <cstring>
using namespace LAMMPS_NS;
/* ---------------------------------------------------------------------- */

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@ -50,7 +50,6 @@
#include "neighbor.h"
#include "potential_file_reader.h"
#include "tabular_function.h"
#include "tokenizer.h"
#include <cmath>
#include <cstring>

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@ -35,7 +35,6 @@
#include "neigh_request.h"
#include "neighbor.h"
#include "potential_file_reader.h"
#include "tokenizer.h"
#include <cmath>
#include <cstring>

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@ -18,20 +18,18 @@
#include "pair_eam.h"
#include <cmath>
#include <cstring>
#include "atom.h"
#include "force.h"
#include "comm.h"
#include "error.h"
#include "force.h"
#include "memory.h"
#include "neighbor.h"
#include "neigh_list.h"
#include "memory.h"
#include "error.h"
#include "potential_file_reader.h"
#include "update.h"
#include "tokenizer.h"
#include "potential_file_reader.h"
#include <cmath>
#include <cstring>
using namespace LAMMPS_NS;

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@ -23,7 +23,6 @@
#include "error.h"
#include "memory.h"
#include "potential_file_reader.h"
#include "tokenizer.h"
#include <cstring>

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@ -29,7 +29,6 @@
#include "tokenizer.h"
#include <cmath>
#include <cstring>
using namespace LAMMPS_NS;

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@ -23,7 +23,6 @@
#include "error.h"
#include "memory.h"
#include "potential_file_reader.h"
#include "tokenizer.h"
#include <cstring>

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@ -35,6 +35,7 @@
#include <cmath>
#include <cstring>
#include <exception>
#include <limits>
using namespace LAMMPS_NS;

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@ -34,6 +34,7 @@
#include <cmath>
#include <cstring>
#include <exception>
using namespace LAMMPS_NS;
using namespace MathExtra;

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@ -30,7 +30,6 @@
#include "neigh_request.h"
#include "neighbor.h"
#include "potential_file_reader.h"
#include "tokenizer.h"
#include <cmath>
#include <cstring>

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@ -24,7 +24,6 @@
#include "math_const.h"
#include "memory.h"
#include "potential_file_reader.h"
#include "tokenizer.h"
#include "update.h"
#include <cmath>

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@ -19,21 +19,19 @@
#include "pair_nb3b_harmonic.h"
#include <cmath>
#include <cstring>
#include "atom.h"
#include "neighbor.h"
#include "neigh_request.h"
#include "force.h"
#include "comm.h"
#include "neigh_list.h"
#include "memory.h"
#include "error.h"
#include "tokenizer.h"
#include "force.h"
#include "memory.h"
#include "neigh_list.h"
#include "neigh_request.h"
#include "neighbor.h"
#include "potential_file_reader.h"
#include <cmath>
#include <cstring>
using namespace LAMMPS_NS;
#define DELTA 4

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@ -33,7 +33,6 @@
#include "neighbor.h"
#include "potential_file_reader.h"
#include "tabular_function.h"
#include "tokenizer.h"
#include <cmath>

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@ -27,7 +27,6 @@
#include "neigh_request.h"
#include "neighbor.h"
#include "potential_file_reader.h"
#include "tokenizer.h"
#include <cmath>
#include <cstring>

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@ -32,7 +32,6 @@
#include "neighbor.h"
#include "potential_file_reader.h"
#include "suffix.h"
#include "tokenizer.h"
#include <cmath>
#include <cstring>

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@ -26,7 +26,6 @@
#include "math_special.h"
#include "memory.h"
#include "potential_file_reader.h"
#include "tokenizer.h"
#include <cmath>
#include <cstring>

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@ -22,7 +22,6 @@
#include "error.h"
#include "memory.h"
#include "potential_file_reader.h"
#include "tokenizer.h"
#include <cmath>
#include <cstring>

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@ -32,7 +32,6 @@
#include "neigh_request.h"
#include "neighbor.h"
#include "potential_file_reader.h"
#include "tokenizer.h"
#include <cmath>
#include <cstring>

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@ -25,7 +25,6 @@
#include "math_special.h"
#include "memory.h"
#include "potential_file_reader.h"
#include "tokenizer.h"
#include "update.h"
#include <cmath>

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@ -19,9 +19,6 @@
#include "pair_vashishta.h"
#include <cmath>
#include <cstring>
#include "atom.h"
#include "comm.h"
#include "error.h"
@ -30,10 +27,11 @@
#include "neighbor.h"
#include "neigh_list.h"
#include "neigh_request.h"
#include "tokenizer.h"
#include "potential_file_reader.h"
#include <cmath>
#include <cstring>
using namespace LAMMPS_NS;
#define DELTA 4

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@ -32,6 +32,8 @@
#include "random_park.h"
#include "update.h"
#include <cmath>
using namespace LAMMPS_NS;
using namespace FixConst;

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@ -14,8 +14,6 @@
#ifndef LMP_MEAM_H
#define LMP_MEAM_H
#include "math_const.h" // IWYU pragma: export
#include <cmath>
#include <string>

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@ -20,7 +20,7 @@
#include <cmath>
using namespace LAMMPS_NS;
using namespace MathConst;
using MathConst::MY_PI;
// do a sanity check on index parameters
void

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@ -28,7 +28,6 @@
#include "neigh_request.h"
#include "neighbor.h"
#include "potential_file_reader.h"
#include "tokenizer.h"
#include <cstring>
#include <memory>

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@ -29,7 +29,6 @@
#include "neigh_list.h"
#include "neigh_request.h"
#include "neighbor.h"
#include "tokenizer.h"
#include "potential_file_reader.h"
#include <cmath>

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@ -24,12 +24,11 @@
#include "force.h"
#include "memory.h"
#include "text_file_reader.h"
#include "tokenizer.h"
#include <cstring>
#include <cmath>
#include <exception>
#include <map>
#include <vector>
using namespace LAMMPS_NS;

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@ -17,7 +17,7 @@
------------------------------------------------------------------------- */
#include "mliap_model_linear.h"
#include "pair_mliap.h"
#include "mliap_data.h"
#include "error.h"

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@ -19,7 +19,6 @@
#include "mliap_model_nn.h"
#include "mliap_data.h"
#include "pair_mliap.h"
#include "comm.h"
#include "error.h"

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@ -39,11 +39,11 @@
#include "memory.h"
#include "potential_file_reader.h"
#include "respa.h"
#include "tokenizer.h"
#include "update.h"
#include <cmath>
#include <cstring>
#include <exception>
using namespace LAMMPS_NS;
using namespace FixConst;

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@ -23,7 +23,6 @@
#include "error.h"
#include "memory.h"
#include "potential_file_reader.h"
#include "tokenizer.h"
#include <cstring>

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@ -23,7 +23,6 @@
#include "error.h"
#include "memory.h"
#include "potential_file_reader.h"
#include "tokenizer.h"
#include <cstring>

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@ -20,6 +20,8 @@
#include "neigh_list.h"
#include "suffix.h"
#include <cmath>
#include "omp_compat.h"
using namespace LAMMPS_NS;

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@ -23,7 +23,6 @@
#include "lattice.h"
#include "math_const.h"
#include "memory.h"
#include "modify.h"
#include "neigh_list.h"
#include "neighbor.h"
#include "suffix.h"

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@ -22,7 +22,6 @@
#include "force.h"
#include "lattice.h"
#include "memory.h"
#include "modify.h"
#include "neigh_list.h"
#include "suffix.h"

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@ -25,7 +25,6 @@
#include "math_special.h"
#include "memory.h"
#include "potential_file_reader.h"
#include "tokenizer.h"
#include "update.h"
#include <cmath>

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@ -28,7 +28,6 @@
#include "reaxff_omp.h"
#include "fix_omp.h"
#include "pair_reaxff_omp.h"
#include "reaxff_api.h"

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@ -27,7 +27,6 @@
#include "reaxff_omp.h"
#include "fix_omp.h"
#include "pair_reaxff_omp.h"
#include "reaxff_api.h"

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@ -30,7 +30,6 @@
#include "reaxff_omp.h"
#include "error.h"
#include "fix_omp.h"
#include "pair_reaxff_omp.h"
#include "reaxff_api.h"

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@ -29,7 +29,6 @@
#include "reaxff_omp.h"
#include "fix_omp.h"
#include "pair_reaxff_omp.h"
#include "reaxff_api.h"

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@ -29,8 +29,6 @@
#include "reaxff_omp.h"
#include "reaxff_api.h"
#include "error.h"
#include <mpi.h>
#include <cstdlib>

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@ -29,7 +29,6 @@
#include "reaxff_omp.h"
#include "fix_omp.h"
#include "pair_reaxff_omp.h"
#include "reaxff_api.h"

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@ -29,7 +29,6 @@
#include "reaxff_omp.h"
#include "fix_omp.h"
#include "pair_reaxff_omp.h"
#include "reaxff_api.h"

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@ -30,7 +30,6 @@
#include "reaxff_omp.h"
#include "error.h"
#include "fix_omp.h"
#include "pair_reaxff_omp.h"
#include "reaxff_api.h"

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@ -26,8 +26,6 @@
#include "modify.h"
#include "update.h"
#include <cstring>
using namespace LAMMPS_NS;
/* ---------------------------------------------------------------------- */

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@ -27,8 +27,6 @@
#include "pair.h"
#include "update.h"
#include <cstring>
using namespace LAMMPS_NS;
/* ---------------------------------------------------------------------- */

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@ -27,8 +27,6 @@
#include "modify.h"
#include "update.h"
#include <cstring>
using namespace LAMMPS_NS;
/* ---------------------------------------------------------------------- */

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@ -20,7 +20,6 @@
#include "lattice.h"
#include "memory.h"
#include "modify.h"
#include "neigh_request.h"
#include "neighbor.h"
#include <cstring>

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@ -28,7 +28,6 @@
#include "math_const.h"
#include "math_special.h"
#include "memory.h"
#include "modify.h"
#include "neigh_list.h"
#include "neighbor.h"

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@ -27,7 +27,6 @@
#include "lattice.h"
#include "math_const.h"
#include "memory.h"
#include "modify.h"
#include "neigh_list.h"
#include "neighbor.h"

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@ -26,9 +26,7 @@
#include "force.h"
#include "lattice.h"
#include "memory.h"
#include "modify.h"
#include "neigh_list.h"
#include "neighbor.h"
#include <cfloat>
#include <cmath>

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@ -26,7 +26,6 @@
#include "force.h"
#include "lattice.h"
#include "memory.h"
#include "modify.h"
#include "neigh_list.h"
#include "neighbor.h"
#include "update.h"

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@ -22,7 +22,6 @@
#include "atom.h"
#include "bond.h"
#include "comm.h"
#include "compute.h"
#include "dihedral.h"
#include "domain.h"
#include "error.h"

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@ -22,20 +22,14 @@
#include "citeme.h"
#include "comm.h"
#include "error.h"
#include "fix_efield.h"
#include "force.h"
#include "group.h"
#include "memory.h"
#include "neigh_list.h"
#include "neigh_request.h"
#include "neighbor.h"
#include "pair.h"
#include "pair_reaxff.h"
#include "reaxff_api.h"
#include "respa.h"
#include "text_file_reader.h"
#include "update.h"
#include "utils.h"
#include <cmath>
#include <cstring>

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@ -30,6 +30,7 @@
#include "force.h"
#include "group.h"
#include "memory.h"
#include "modify.h"
#include "neigh_list.h"
#include "neigh_request.h"
#include "neighbor.h"
@ -45,7 +46,6 @@
#include <cmath>
#include <cstring>
#include <exception>
#include <string>
using namespace LAMMPS_NS;
using namespace FixConst;

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@ -28,8 +28,6 @@
#include "pair_reaxff.h"
#include "reaxff_api.h"
#include <cstring>
using namespace LAMMPS_NS;
using namespace FixConst;
using namespace ReaxFF;

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@ -34,6 +34,7 @@
#include "reaxff_defs.h"
#include <cstring>
#include <exception>
using namespace LAMMPS_NS;
using namespace FixConst;

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@ -14,7 +14,7 @@
#ifndef LMP_COMMAND_H
#define LMP_COMMAND_H
#include "pointers.h"
#include "pointers.h" // IWYU pragma: keep
namespace LAMMPS_NS {

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@ -14,9 +14,7 @@
#include "fix_dt_reset.h"
#include "atom.h"
#include "comm.h"
#include "domain.h"
#include "dump.h"
#include "error.h"
#include "fix.h"
#include "force.h"

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@ -40,7 +40,6 @@
#include "pair.h"
#include "pair_hybrid.h"
#include "region.h"
#include "text_file_reader.h"
#include "update.h"
#include "variable.h"
#include "fmt/chrono.h"
@ -49,7 +48,6 @@
#include <cmath>
#include <cstring>
#include <ctime>
#include <exception>
#include <map>
#ifdef _WIN32
@ -62,7 +60,6 @@
#include <psapi.h>
#else
#include <sys/resource.h>
#include <sys/utsname.h>
#endif
#if defined(__linux__)

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@ -50,7 +50,6 @@
#include <cstring>
#include <cerrno>
#include <cctype>
#include <sys/stat.h>
using namespace LAMMPS_NS;

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@ -14,7 +14,7 @@
#ifndef LMP_NBIN_H
#define LMP_NBIN_H
#include "pointers.h"
#include "pointers.h" // IWYU pragma: keep
namespace LAMMPS_NS {

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@ -14,7 +14,7 @@
#ifndef LMP_NPAIR_H
#define LMP_NPAIR_H
#include "pointers.h"
#include "pointers.h" // IWYU pragma: keep
namespace LAMMPS_NS {

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@ -14,7 +14,7 @@
#ifndef LMP_NSTENCIL_H
#define LMP_NSTENCIL_H
#include "pointers.h"
#include "pointers.h" // IWYU pragma: keep
namespace LAMMPS_NS {

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@ -14,7 +14,7 @@
#ifndef LMP_NTOPO_H
#define LMP_NTOPO_H
#include "pointers.h"
#include "pointers.h" // IWYU pragma: keep
namespace LAMMPS_NS {

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@ -19,9 +19,8 @@
#include "text_file_reader.h"
#include "utils.h"
#if HAVE_MPI
#include <mpi.h>
#endif
#include <exception>
////////////////////////////////////////////////////////////////////////
// include system headers and tweak system settings
@ -50,7 +49,6 @@
#include <dlfcn.h>
#include <sys/resource.h>
#include <sys/stat.h>
#include <sys/time.h>
#include <sys/types.h>
#include <sys/utsname.h>
#include <unistd.h>

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@ -18,6 +18,7 @@
#include "lmptype.h"
#include <cstdio>
#include <string>
#include <vector>

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@ -19,7 +19,7 @@
#define LMP_POTENTIAL_FILE_READER_H
#include "pointers.h" // IWYU pragma: export
#include "tokenizer.h"
#include "tokenizer.h" // IWYU pragma: export
namespace LAMMPS_NS {
class TextFileReader;

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@ -40,7 +40,6 @@
#include <cctype>
#include <cstring>
#include <string>
#include <unordered_set>
using namespace LAMMPS_NS;

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@ -22,11 +22,9 @@
#include "memory.h"
#include "modify.h"
#include "text_file_reader.h"
#include "tokenizer.h"
#include "update.h"
#include "universe.h"
#include <algorithm>
#include <cctype>
#include <cerrno>
#include <cstring>

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@ -29,7 +29,6 @@
// g++ -g -DLAMMPS_BIGBIG binarytxt.o -o binary2txt
// again -DLAMMPS_SMALLBIG is the default
#include <cstdint>
#define __STDC_FORMAT_MACROS
#include <cinttypes>