From 3f9947592595f9de184e61310c51b2e2665ca19c Mon Sep 17 00:00:00 2001 From: sjplimp Date: Fri, 16 Feb 2007 21:06:13 +0000 Subject: [PATCH] git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@317 f3b2605a-c512-4ea7-a41b-209d697bcdaa --- doc/Manual.html | 4 ++-- doc/Manual.txt | 4 ++-- doc/fix_gran_diag.html | 2 +- doc/fix_gran_diag.txt | 2 +- doc/fix_wall_reflect.html | 7 +++++++ doc/fix_wall_reflect.txt | 7 +++++++ 6 files changed, 20 insertions(+), 6 deletions(-) diff --git a/doc/Manual.html b/doc/Manual.html index 29bd222136..81a09ebdcd 100644 --- a/doc/Manual.html +++ b/doc/Manual.html @@ -59,9 +59,9 @@ we can improve the LAMMPS documentation.
2.2 Making LAMMPS
- 2.3 Making LAMMPS with optional packages + 2.3 Making LAMMPS with optional packages
- 2.4 Building LAMMPS as a library + 2.4 Building LAMMPS as a library
2.5 Running LAMMPS
diff --git a/doc/Manual.txt b/doc/Manual.txt index 6749a1ae41..3f4abcaa6d 100644 --- a/doc/Manual.txt +++ b/doc/Manual.txt @@ -47,8 +47,8 @@ we can improve the LAMMPS documentation. "Getting started"_Section_start.html :l 2.1 "What's in the LAMMPS distribution"_2_1 :ulb,b 2.2 "Making LAMMPS"_2_2 :b - 2.3 "Making LAMMPS with optional packages"_#2_3 :b - 2.4 "Building LAMMPS as a library"_#2_4 :b + 2.3 "Making LAMMPS with optional packages"_2_3 :b + 2.4 "Building LAMMPS as a library"_2_4 :b 2.5 "Running LAMMPS"_2_5 :b 2.6 "Command-line options"_2_6 :b 2.7 "Screen output"_2_7 :b diff --git a/doc/fix_gran_diag.html b/doc/fix_gran_diag.html index bc321d39f2..3ce856bdd1 100644 --- a/doc/fix_gran_diag.html +++ b/doc/fix_gran_diag.html @@ -31,7 +31,7 @@ group of granular atoms as a function of z depth in the granular system. The results are written to 3 files named file.den, file.vel, and file.str. The z bins begin at the bottom of the system and extend -upward with a thickness of zlayer for each bin. The quantities +upward with a thickness of zlayer for each bin. The quantities written to the file are averaged over all atoms in the bin.

Restrictions: diff --git a/doc/fix_gran_diag.txt b/doc/fix_gran_diag.txt index 5d371a7004..31d2769bee 100644 --- a/doc/fix_gran_diag.txt +++ b/doc/fix_gran_diag.txt @@ -28,7 +28,7 @@ Compute aggregate density, velocity, and stress diagnostics for a group of granular atoms as a function of z depth in the granular system. The results are written to 3 files named file.den, file.vel, and file.str. The z bins begin at the bottom of the system and extend -upward with a thickness of zlayer for each bin. The quantities +upward with a thickness of {zlayer} for each bin. The quantities written to the file are averaged over all atoms in the bin. [Restrictions:] diff --git a/doc/fix_wall_reflect.html b/doc/fix_wall_reflect.html index 2e63414a82..6e53f52337 100644 --- a/doc/fix_wall_reflect.html +++ b/doc/fix_wall_reflect.html @@ -38,6 +38,13 @@ by a distance delta (e.g. due to fix nve), then it put back inside the box by the same delta and the sign of the corresponding component of its velocity is flipped.

+

This fix performs its operations at the same point in the timestep as +other time integration fixes, such as fix nve, fix +nvt, or fix npt. It is important that it +be the last such fix specified in the input script, since it changes +the atom positions set by those fixes to insure atoms stay within the +simulation box. +

Restrictions: none

Related commands: diff --git a/doc/fix_wall_reflect.txt b/doc/fix_wall_reflect.txt index 9df061e889..e9b6c1aacd 100644 --- a/doc/fix_wall_reflect.txt +++ b/doc/fix_wall_reflect.txt @@ -35,6 +35,13 @@ by a distance delta (e.g. due to "fix nve"_fix_nve.html), then it is put back inside the box by the same delta and the sign of the corresponding component of its velocity is flipped. +This fix performs its operations at the same point in the timestep as +other time integration fixes, such as "fix nve"_fix_nve.html, "fix +nvt"_fix_nvt.html, or "fix npt"_fix_npt.html. It is important that it +be the last such fix specified in the input script, since it changes +the atom positions set by those fixes to insure atoms stay within the +simulation box. + [Restrictions:] none [Related commands:]