diff --git a/doc/Section_start.html b/doc/Section_start.html index 009450b408..76e2bea3c9 100644 --- a/doc/Section_start.html +++ b/doc/Section_start.html @@ -219,8 +219,8 @@ gmake foo

(1) Building LAMMPS for multiple platforms.

You can make LAMMPS for multiple platforms from the same src -directory. Each target creates its own object sub-dir called Obj_name -where it stores the system-specific *.o files. +directory. Each target creates its own object sub-directory called +Obj_name where it stores the system-specific *.o files.

(2) Cleaning up.

diff --git a/doc/Section_start.txt b/doc/Section_start.txt index da31de42fd..2b8e1428b6 100644 --- a/doc/Section_start.txt +++ b/doc/Section_start.txt @@ -214,8 +214,8 @@ You should get the executable lmp_foo when the build is complete. (1) Building LAMMPS for multiple platforms. You can make LAMMPS for multiple platforms from the same src -directory. Each target creates its own object sub-dir called Obj_name -where it stores the system-specific *.o files. +directory. Each target creates its own object sub-directory called +Obj_name where it stores the system-specific *.o files. (2) Cleaning up. diff --git a/doc/dimension.html b/doc/dimension.html index 638e6b1e17..5a0866c056 100644 --- a/doc/dimension.html +++ b/doc/dimension.html @@ -32,6 +32,11 @@ Restart files also store this setting.

See the discussion in this section for additional instructions on how to run 2d simulations.

+

IMPORTANT NOTE: Some models in LAMMPS treat particles as extended +spheres or ellipsoids, as opposed to point particles. In 2d, the +particles will still be spheres or ellipsoids, not circular disks or +ellipses, meaning their moment of inertia will be the same as in 3d. +

Restrictions:

This command must be used before the simulation box is defined by a diff --git a/doc/dimension.txt b/doc/dimension.txt index f09068d199..00e5bcfeb4 100644 --- a/doc/dimension.txt +++ b/doc/dimension.txt @@ -29,6 +29,11 @@ Restart files also store this setting. See the discussion in "this section"_Section_howto.html for additional instructions on how to run 2d simulations. +IMPORTANT NOTE: Some models in LAMMPS treat particles as extended +spheres or ellipsoids, as opposed to point particles. In 2d, the +particles will still be spheres or ellipsoids, not circular disks or +ellipses, meaning their moment of inertia will be the same as in 3d. + [Restrictions:] This command must be used before the simulation box is defined by a diff --git a/doc/fix_nve_asphere.html b/doc/fix_nve_asphere.html index 68cfee9ac7..e62a9e593d 100644 --- a/doc/fix_nve_asphere.html +++ b/doc/fix_nve_asphere.html @@ -29,6 +29,9 @@ angular velocity for aspherical particles in the group each timestep. V is volume; E is energy. This creates a system trajectory consistent with the microcanonical ensemble.

+

This fix differs from the fix nve command, which +assumes point particles and only updates their position and velocity. +

Restart, fix_modify, output, run start/stop, minimize info:

No information about this fix is written to binary restart diff --git a/doc/fix_nve_asphere.txt b/doc/fix_nve_asphere.txt index d4b44d2396..c8139de627 100755 --- a/doc/fix_nve_asphere.txt +++ b/doc/fix_nve_asphere.txt @@ -26,6 +26,9 @@ angular velocity for aspherical particles in the group each timestep. V is volume; E is energy. This creates a system trajectory consistent with the microcanonical ensemble. +This fix differs from the "fix nve"_fix_nve.html command, which +assumes point particles and only updates their position and velocity. + [Restart, fix_modify, output, run start/stop, minimize info:] No information about this fix is written to "binary restart diff --git a/doc/jump.html b/doc/jump.html index 76c7c8d2ff..f449a183a4 100644 --- a/doc/jump.html +++ b/doc/jump.html @@ -52,8 +52,8 @@ jump in.lj loop

If the jump file argument is a variable, the jump command can be used to cause different processor partitions to run different input scripts. In this example, LAMMPS is run on 40 processors, with 4 -partitions of 10 procs each. An in.file containing the example variable -and jump command will cause each partition to run a different +partitions of 10 procs each. An in.file containing the example +variable and jump command will cause each partition to run a different simulation. 

mpirun -np 40 lmp_ibm -partition 4x10 -in in.file 
diff --git a/doc/jump.txt b/doc/jump.txt
index b8b2d71d23..e0c63a1be4 100644
--- a/doc/jump.txt
+++ b/doc/jump.txt
@@ -49,8 +49,8 @@ jump in.lj loop :pre
 If the jump {file} argument is a variable, the jump command can be
 used to cause different processor partitions to run different input
 scripts.  In this example, LAMMPS is run on 40 processors, with 4
-partitions of 10 procs each.  An in.file containing the example variable
-and jump command will cause each partition to run a different
+partitions of 10 procs each.  An in.file containing the example
+variable and jump command will cause each partition to run a different
 simulation.
 
 mpirun -np 40 lmp_ibm -partition 4x10 -in in.file :pre