initialize static string buffers to empty strings
This commit is contained in:
@ -79,7 +79,7 @@ void PairAmoeba::read_prmfile(char *filename)
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int me = comm->me;
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int me = comm->me;
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FILE *fptr;
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FILE *fptr;
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char line[MAXLINE];
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char line[MAXLINE] = {'\0'};
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if (me == 0) {
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if (me == 0) {
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fptr = utils::open_potential(filename, lmp, nullptr);
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fptr = utils::open_potential(filename, lmp, nullptr);
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@ -179,8 +179,7 @@ void PairAmoeba::read_prmfile(char *filename)
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for (int i = 1; i <= n_amtype; i++) nmultiframe[i] = 0;
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for (int i = 1; i <= n_amtype; i++) nmultiframe[i] = 0;
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}
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}
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char next[MAXLINE];
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char next[MAXLINE] = {'\0'};
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next[0] = '\0';
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bool has_next = false;
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bool has_next = false;
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int n;
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int n;
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while (true) {
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while (true) {
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@ -381,7 +380,7 @@ void PairAmoeba::read_keyfile(char *filename)
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int me = comm->me;
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int me = comm->me;
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FILE *fptr;
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FILE *fptr;
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char line[MAXLINE];
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char line[MAXLINE] = {'\0'};
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if (me == 0) {
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if (me == 0) {
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fptr = utils::open_potential(filename, lmp, nullptr);
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fptr = utils::open_potential(filename, lmp, nullptr);
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if (fptr == nullptr)
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if (fptr == nullptr)
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@ -724,7 +724,7 @@ double FixAmoebaBiTorsion::compute_scalar()
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void FixAmoebaBiTorsion::read_grid_data(char *bitorsion_file)
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void FixAmoebaBiTorsion::read_grid_data(char *bitorsion_file)
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{
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{
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char line[MAXLINE];
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char line[MAXLINE] = {'\0'};
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char *eof;
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char *eof;
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FILE *fp = nullptr;
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FILE *fp = nullptr;
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@ -616,8 +616,8 @@ int FixBocs::read_F_table( char *filename, int p_basis_type )
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// Data file lines hold two floating point numbers.
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// Data file lines hold two floating point numbers.
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// Line length we allocate should be long enough without being too long.
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// Line length we allocate should be long enough without being too long.
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// 128 seems safe for a line we expect to be < 30 chars.
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// 128 seems safe for a line we expect to be < 30 chars.
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const int MAX_F_TABLE_LINE_LENGTH = 128;
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constexpr int MAX_F_TABLE_LINE_LENGTH = 128;
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char line[MAX_F_TABLE_LINE_LENGTH];
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char line[MAX_F_TABLE_LINE_LENGTH] = {'\0'};
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std::vector<std::string> inputLines;
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std::vector<std::string> inputLines;
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while (fgets(line, MAX_F_TABLE_LINE_LENGTH, fpi)) {
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while (fgets(line, MAX_F_TABLE_LINE_LENGTH, fpi)) {
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inputLines.emplace_back(line);
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inputLines.emplace_back(line);
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@ -194,7 +194,7 @@ void FixEOStable::free_table(Table *tb)
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void FixEOStable::read_table(Table *tb, Table *tb2, char *file, char *keyword)
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void FixEOStable::read_table(Table *tb, Table *tb2, char *file, char *keyword)
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{
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{
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char line[MAXLINE];
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char line[MAXLINE] = {'\0'};
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// open file
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// open file
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@ -318,7 +318,8 @@ void FixEOStableRX::read_file(char *file)
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// one set of params can span multiple lines
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// one set of params can span multiple lines
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int n,nwords,ispecies;
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int n,nwords,ispecies;
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char line[MAXLINE],*ptr;
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char line[MAXLINE] = {'\0'};
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char *ptr;
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int eof = 0;
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int eof = 0;
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while (true) {
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while (true) {
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@ -414,7 +415,7 @@ void FixEOStableRX::free_table(Table *tb)
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void FixEOStableRX::read_table(Table *tb, Table *tb2, char *file, char *keyword)
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void FixEOStableRX::read_table(Table *tb, Table *tb2, char *file, char *keyword)
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{
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{
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char line[MAXLINE];
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char line[MAXLINE] = {'\0'};
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// open file
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// open file
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@ -250,7 +250,8 @@ void FixRX::post_constructor()
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// Assign species names to tmpspecies array and determine the number of unique species
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// Assign species names to tmpspecies array and determine the number of unique species
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int n;
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int n;
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char line[MAXLINE],*ptr;
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char line[MAXLINE] = {'\0'};
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char *ptr;
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int eof = 0;
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int eof = 0;
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char * word;
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char * word;
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@ -784,7 +785,8 @@ void FixRX::read_file(char *file)
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// Count the number of reactions from kinetics file
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// Count the number of reactions from kinetics file
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int n,ispecies;
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int n,ispecies;
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char line[MAXLINE],*ptr;
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char line[MAXLINE] = {'\0'};
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char *ptr;
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int eof = 0;
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int eof = 0;
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while (true) {
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while (true) {
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@ -728,7 +728,8 @@ void PairExp6rx::read_file(char *file)
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// one set of params can span multiple lines
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// one set of params can span multiple lines
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int n,nwords,ispecies;
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int n,nwords,ispecies;
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char line[MAXLINE],*ptr;
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char line[MAXLINE] = {'\0'};
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char *ptr;
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int eof = 0;
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int eof = 0;
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while (true) {
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while (true) {
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@ -835,7 +836,8 @@ void PairExp6rx::read_file2(char *file)
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// one set of params can span multiple lines
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// one set of params can span multiple lines
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int n,nwords;
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int n,nwords;
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char line[MAXLINE],*ptr;
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char line[MAXLINE] = {'\0'};
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char *ptr;
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int eof = 0;
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int eof = 0;
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while (true) {
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while (true) {
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@ -344,7 +344,7 @@ double PairMultiLucy::init_one(int i, int j)
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void PairMultiLucy::read_table(Table *tb, char *file, char *keyword)
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void PairMultiLucy::read_table(Table *tb, char *file, char *keyword)
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{
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{
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char line[MAXLINE];
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char line[MAXLINE] = {'\0'};
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// open file
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// open file
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@ -483,7 +483,7 @@ double PairMultiLucyRX::init_one(int i, int j)
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void PairMultiLucyRX::read_table(Table *tb, char *file, char *keyword)
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void PairMultiLucyRX::read_table(Table *tb, char *file, char *keyword)
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{
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{
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char line[MAXLINE];
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char line[MAXLINE] = {'\0'};
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// open file
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// open file
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@ -445,7 +445,8 @@ void PairSNAPIntel::read_files(char *coefffilename, char *paramfilename)
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coefffilename, utils::getsyserror());
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coefffilename, utils::getsyserror());
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}
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}
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char line[MAXLINE],*ptr;
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char line[MAXLINE] = {'\0'};
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char *ptr;
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int eof = 0;
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int eof = 0;
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int nwords = 0;
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int nwords = 0;
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while (nwords == 0) {
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while (nwords == 0) {
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@ -281,7 +281,8 @@ void KimInteractions::KIM_SET_TYPE_PARAMETERS(const std::string &input_line) con
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if (fp == nullptr) error->one(FLERR, "Parameter file {} not found", filename);
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if (fp == nullptr) error->one(FLERR, "Parameter file {} not found", filename);
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}
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}
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char line[MAXLINE], *ptr;
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char line[MAXLINE] = {'\0'};
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char *ptr;
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int n, eof = 0;
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int n, eof = 0;
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while (true) {
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while (true) {
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@ -1702,7 +1702,8 @@ void PairExp6rxKokkos<DeviceType>::read_file(char *file)
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// one set of params can span multiple lines
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// one set of params can span multiple lines
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int n,nwords,ispecies;
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int n,nwords,ispecies;
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char line[MAXLINE],*ptr;
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char line[MAXLINE] = {'\0'};
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char *ptr;
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int eof = 0;
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int eof = 0;
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while (true) {
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while (true) {
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@ -380,7 +380,8 @@ void MLIAPDescriptorSNAP::read_paramfile(char *paramfilename)
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utils::getsyserror());
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utils::getsyserror());
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}
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}
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char line[MAXLINE], *ptr;
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char line[MAXLINE] = {'\0'};
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char *ptr;
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int eof = 0;
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int eof = 0;
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int n;
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int n;
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@ -90,7 +90,8 @@ void MLIAPDescriptorSO3::read_paramfile(char *paramfilename)
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utils::getsyserror());
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utils::getsyserror());
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}
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}
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char line[MAXLINE], *ptr;
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char line[MAXLINE] = {'\0'};
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char *ptr;
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int eof = 0;
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int eof = 0;
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int n, nwords;
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int n, nwords;
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@ -93,7 +93,8 @@ void MLIAPModelSimple::read_coeffs(char *coefffilename)
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utils::getsyserror());
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utils::getsyserror());
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}
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}
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char line[MAXLINE], *ptr;
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char line[MAXLINE] = {'\0'};
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char *ptr;
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int eof = 0;
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int eof = 0;
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int n;
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int n;
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@ -75,7 +75,8 @@ void MLIAPModelNN::read_coeffs(char *coefffilename)
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utils::getsyserror());
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utils::getsyserror());
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}
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}
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char line[MAXLINE], *ptr;
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char line[MAXLINE] = {'\0'};
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char *ptr;
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int n, eof = 0, nwords = 0;
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int n, eof = 0, nwords = 0;
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while (nwords == 0) {
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while (nwords == 0) {
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if (comm->me == 0) {
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if (comm->me == 0) {
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@ -150,7 +150,8 @@ int FitPOD::read_data_file(double *fitting_weights, std::string &file_format,
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// loop through lines of training data file and parse keywords
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// loop through lines of training data file and parse keywords
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char line[MAXLINE],*ptr;
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char line[MAXLINE] = {'\0'};
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char *ptr;
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int eof = 0;
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int eof = 0;
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while (true) {
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while (true) {
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if (comm->me == 0) {
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if (comm->me == 0) {
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@ -251,7 +252,8 @@ int FitPOD::get_number_atom_exyz(std::vector<int>& num_atom, int& num_atom_sum,
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error->one(FLERR,"Cannot open POD coefficient file {}: ", filename, utils::getsyserror());
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error->one(FLERR,"Cannot open POD coefficient file {}: ", filename, utils::getsyserror());
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}
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}
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char line[MAXLINE],*ptr;
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char line[MAXLINE] = {'\0'};
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char *ptr;
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int eof = 0;
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int eof = 0;
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int num_configs = 0;
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int num_configs = 0;
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num_atom_sum = 0;
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num_atom_sum = 0;
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@ -323,7 +325,8 @@ void FitPOD::read_exyz_file(double *lattice, double *stress, double *energy, dou
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error->one(FLERR,"Cannot open POD coefficient file {}: ", filename, utils::getsyserror());
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error->one(FLERR,"Cannot open POD coefficient file {}: ", filename, utils::getsyserror());
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}
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}
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char line[MAXLINE],*ptr;
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char line[MAXLINE] = {'\0'};
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char *ptr;
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int eof = 0;
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int eof = 0;
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int cfi = 0;
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int cfi = 0;
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int nat = 0;
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int nat = 0;
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@ -302,7 +302,8 @@ void MLPOD::read_pod(const std::string &pod_file)
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// loop through lines of POD file and parse keywords
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// loop through lines of POD file and parse keywords
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char line[MAXLINE],*ptr;
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char line[MAXLINE] = {'\0'};
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char *ptr;
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int eof = 0;
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int eof = 0;
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while (true) {
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while (true) {
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if (comm->me == 0) {
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if (comm->me == 0) {
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@ -639,7 +640,8 @@ void MLPOD::read_coeff_file(const std::string &coeff_file)
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// check format for first line of file
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// check format for first line of file
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char line[MAXLINE],*ptr;
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char line[MAXLINE] = {'\0'};
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char *ptr;
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int eof = 0;
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int eof = 0;
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int nwords = 0;
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int nwords = 0;
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while (nwords == 0) {
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while (nwords == 0) {
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@ -616,7 +616,8 @@ void PairRANN::read_weight(std::vector<std::string> line,std::vector<std::string
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void PairRANN::read_bias(std::vector<std::string> line,std::vector<std::string> line1,FILE* fp,char *filename,int *linenum) {
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void PairRANN::read_bias(std::vector<std::string> line,std::vector<std::string> line1,FILE* fp,char *filename,int *linenum) {
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int i,j,l;
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int i,j,l;
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char linetemp[MAXLINE],*ptr;
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char linetemp[MAXLINE] = {'\0'};
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char *ptr;
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for (l=0;l<nelements;l++) {
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for (l=0;l<nelements;l++) {
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if (line[1].compare(elements[l])==0) {
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if (line[1].compare(elements[l])==0) {
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if (net[l].layers==0)error->one(filename,*linenum-1,"networklayers must be defined before biases.");
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if (net[l].layers==0)error->one(filename,*linenum-1,"networklayers must be defined before biases.");
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@ -475,7 +475,8 @@ void PairSNAP::read_files(char *coefffilename, char *paramfilename)
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coefffilename, utils::getsyserror());
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coefffilename, utils::getsyserror());
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}
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}
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char line[MAXLINE],*ptr;
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char line[MAXLINE] = {'\0'};
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char *ptr;
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int eof = 0;
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int eof = 0;
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int nwords = 0;
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int nwords = 0;
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while (nwords == 0) {
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while (nwords == 0) {
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@ -555,7 +555,7 @@ void FixPhonon::readmap()
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}
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}
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// read from map file for others
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// read from map file for others
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char line[MAXLINE];
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char line[MAXLINE] = {'\0'};
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FILE *fp = fopen(mapfile, "r");
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FILE *fp = fopen(mapfile, "r");
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if (fp == nullptr)
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if (fp == nullptr)
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error->all(FLERR,"Cannot open input map file {}: {}", mapfile, utils::getsyserror());
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error->all(FLERR,"Cannot open input map file {}: {}", mapfile, utils::getsyserror());
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@ -3922,7 +3922,8 @@ read map file
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void FixBondReact::read_map_file(int myrxn)
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void FixBondReact::read_map_file(int myrxn)
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{
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{
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int rv;
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int rv;
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char line[MAXLINE],keyword[MAXLINE];
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char line[MAXLINE] = {'\0'};
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char keyword[MAXLINE] = {'\0'};
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char *eof,*ptr;
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char *eof,*ptr;
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// skip 1st line of file
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// skip 1st line of file
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@ -437,7 +437,7 @@ void NEB::readfile(char *file, int flag)
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int i, nchunk, eofflag, nlines;
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int i, nchunk, eofflag, nlines;
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tagint tag;
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tagint tag;
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char *eof, *start, *next, *buf;
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char *eof, *start, *next, *buf;
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char line[MAXLINE];
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char line[MAXLINE] = {'\0'};
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double delx, dely, delz;
|
double delx, dely, delz;
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if (me_universe == 0 && universe->uscreen)
|
if (me_universe == 0 && universe->uscreen)
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@ -2300,7 +2300,7 @@ void FixRigid::readfile(int which, double *vec, double **array1, double **array2
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int nlines;
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int nlines;
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FILE *fp;
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FILE *fp;
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char *eof,*start,*next,*buf;
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char *eof,*start,*next,*buf;
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char line[MAXLINE];
|
char line[MAXLINE] = {'\0'};
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// open file and read and parse first non-empty, non-comment line containing the number of bodies
|
// open file and read and parse first non-empty, non-comment line containing the number of bodies
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if (comm->me == 0) {
|
if (comm->me == 0) {
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@ -2470,7 +2470,7 @@ void FixRigidSmall::readfile(int which, double **array, int *inbody)
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int nchunk,eofflag,nlines,xbox,ybox,zbox;
|
int nchunk,eofflag,nlines,xbox,ybox,zbox;
|
||||||
FILE *fp;
|
FILE *fp;
|
||||||
char *eof,*start,*next,*buf;
|
char *eof,*start,*next,*buf;
|
||||||
char line[MAXLINE];
|
char line[MAXLINE] = {'\0'};
|
||||||
|
|
||||||
// create local hash with key/value pairs
|
// create local hash with key/value pairs
|
||||||
// key = mol ID of bodies my atoms own
|
// key = mol ID of bodies my atoms own
|
||||||
|
|||||||
@ -375,7 +375,7 @@ void NEBSpin::readfile(char *file, int flag)
|
|||||||
int i,nchunk,eofflag,nlines;
|
int i,nchunk,eofflag,nlines;
|
||||||
tagint tag;
|
tagint tag;
|
||||||
char *eof,*start,*next,*buf;
|
char *eof,*start,*next,*buf;
|
||||||
char line[MAXLINE];
|
char line[MAXLINE] = {'\0'};
|
||||||
double musp,xx,yy,zz,spx,spy,spz;
|
double musp,xx,yy,zz,spx,spy,spz;
|
||||||
|
|
||||||
if (me_universe == 0 && universe->uscreen)
|
if (me_universe == 0 && universe->uscreen)
|
||||||
|
|||||||
@ -147,7 +147,7 @@ void AngleWrite::command(int narg, char **arg)
|
|||||||
writer->input->one("mass * 1.0");
|
writer->input->one("mass * 1.0");
|
||||||
writer->input->one(fmt::format("angle_style {}", force->angle_style));
|
writer->input->one(fmt::format("angle_style {}", force->angle_style));
|
||||||
FILE *coeffs;
|
FILE *coeffs;
|
||||||
char line[MAXLINE];
|
char line[MAXLINE] = {'\0'};
|
||||||
coeffs = fopen(coeffs_file.c_str(), "r");
|
coeffs = fopen(coeffs_file.c_str(), "r");
|
||||||
for (int i = 0; i < atom->nangletypes; ++i) {
|
for (int i = 0; i < atom->nangletypes; ++i) {
|
||||||
fgets(line, MAXLINE, coeffs);
|
fgets(line, MAXLINE, coeffs);
|
||||||
|
|||||||
@ -148,7 +148,7 @@ void DihedralWrite::command(int narg, char **arg)
|
|||||||
writer->input->one("mass * 1.0");
|
writer->input->one("mass * 1.0");
|
||||||
writer->input->one(fmt::format("dihedral_style {}", force->dihedral_style));
|
writer->input->one(fmt::format("dihedral_style {}", force->dihedral_style));
|
||||||
FILE *coeffs;
|
FILE *coeffs;
|
||||||
char line[MAXLINE];
|
char line[MAXLINE] = {'\0'};
|
||||||
coeffs = fopen(coeffs_file.c_str(), "r");
|
coeffs = fopen(coeffs_file.c_str(), "r");
|
||||||
for (int i = 0; i < atom->ndihedraltypes; ++i) {
|
for (int i = 0; i < atom->ndihedraltypes; ++i) {
|
||||||
fgets(line, MAXLINE, coeffs);
|
fgets(line, MAXLINE, coeffs);
|
||||||
|
|||||||
@ -416,7 +416,7 @@ void Molecule::compute_inertia()
|
|||||||
|
|
||||||
void Molecule::read(int flag)
|
void Molecule::read(int flag)
|
||||||
{
|
{
|
||||||
char line[MAXLINE];
|
char line[MAXLINE] = {'\0'};
|
||||||
char *eof;
|
char *eof;
|
||||||
|
|
||||||
// skip 1st line of file
|
// skip 1st line of file
|
||||||
@ -2134,7 +2134,7 @@ void Molecule::readline(char *line)
|
|||||||
|
|
||||||
std::string Molecule::parse_keyword(int flag, char *line)
|
std::string Molecule::parse_keyword(int flag, char *line)
|
||||||
{
|
{
|
||||||
char line2[MAXLINE];
|
char line2[MAXLINE] = {'\0'};
|
||||||
if (flag) {
|
if (flag) {
|
||||||
|
|
||||||
// read upto non-blank line plus 1 following line
|
// read upto non-blank line plus 1 following line
|
||||||
|
|||||||
@ -282,7 +282,7 @@ void ProcMap::custom_grid(char *cfile, int nprocs,
|
|||||||
int me;
|
int me;
|
||||||
MPI_Comm_rank(world,&me);
|
MPI_Comm_rank(world,&me);
|
||||||
|
|
||||||
char line[MAXLINE];
|
char line[MAXLINE] = {'\0'};
|
||||||
FILE *fp = nullptr;
|
FILE *fp = nullptr;
|
||||||
|
|
||||||
if (me == 0) {
|
if (me == 0) {
|
||||||
|
|||||||
@ -69,7 +69,7 @@ Universe::~Universe()
|
|||||||
|
|
||||||
void Universe::reorder(char *style, char *arg)
|
void Universe::reorder(char *style, char *arg)
|
||||||
{
|
{
|
||||||
char line[MAXLINE];
|
char line[MAXLINE] = {'\0'};
|
||||||
|
|
||||||
if (uworld != uorig) MPI_Comm_free(&uworld);
|
if (uworld != uorig) MPI_Comm_free(&uworld);
|
||||||
|
|
||||||
|
|||||||
Reference in New Issue
Block a user