address a whole bunch of spelling issues that suddenly popped up.

This commit is contained in:
Axel Kohlmeyer
2021-02-09 12:38:46 -05:00
parent 653c296246
commit 418135667f
10 changed files with 14 additions and 10 deletions

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@ -90,7 +90,7 @@ The fix must also do the following:
The fix must also specify whether (by default) to include or exclude
these contributions to the global/peratom energy/virial of the system.
For the fix to include the contributions, set either of both of these
variables in the contructor:
variables in the constructor:
* *thermo_energy* = 1, for global and peratom energy
* *thermo_virial* = 1, for global and peratom virial

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@ -103,7 +103,7 @@ uninterrupted fashion.
The :doc:`fix_modify <fix_modify>` *energy* option is supported by
this fix to add the potential energy of the CMAP interactions to both
the global potential energy and peratom potential energies of the
sysstem as part of :doc:`thermodynamic output <thermo_style>` or
system as part of :doc:`thermodynamic output <thermo_style>` or
output by the :doc:`compute pe/atom <compute_pe_atom>` command. The
default setting for this fix is :doc:`fix_modify energy yes
<fix_modify>`.

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@ -115,7 +115,7 @@ in a pair of double quotes ("), or can span multiple lines when bracketed
by a pair of triple double quotes (""", like python embedded documentation).
This fix computes a global scalar which can be accessed by various
:doc:`output commands <Howto_output>`. The scalar is the Covars
:doc:`output commands <Howto_output>`. The scalar is the Colvars
energy mentioned above. The scalar value calculated by this fix is
"extensive".

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@ -83,7 +83,7 @@ appropriate fix.
.. note::
For most fixes that suppport the *energy* keyword, the default
For most fixes that support the *energy* keyword, the default
setting is *no*. For a few it is *yes*, when a user would expect
that to be the case. The doc page of each fix gives the default.
@ -108,7 +108,7 @@ option to include or exclude the contribution from fixes.
.. note::
For most fixes that suppport the *virial* keyword, the default
For most fixes that support the *virial* keyword, the default
setting is *no*. For a few it is *yes*, when a user would expect
that to be the case. The doc page of each fix gives the default.

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@ -149,7 +149,7 @@ No information about this fix is written to :doc:`binary restart files
The :doc:`fix_modify <fix_modify>` *energy* option is supported by
this fix to add the potential energy of atom interactions with the
grain bounadry driving force to the global potential energy of the
grain boundary driving force to the global potential energy of the
system as part of :doc:`thermodynamic output <thermo_style>`. The
default setting for this fix is :doc:`fix_modify energy no
<fix_modify>`.

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@ -103,7 +103,7 @@ files <restart>`.
The :doc:`fix_modify <fix_modify>` *energy* option is supported by
this fix to add the potential energy of atom interactions with the
grain bounadry driving force to the global potential energy of the
grain boundary driving force to the global potential energy of the
system as part of :doc:`thermodynamic output <thermo_style>`. The
default setting for this fix is :doc:`fix_modify energy no
<fix_modify>`.

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@ -141,7 +141,7 @@ No information about this fix is written to :doc:`binary restart files
<restart>`.
The :doc:`fix_modify <fix_modify>` *energy* option is supported by
this fix to add the energy assocatiated with the spin precession
this fix to add the energy associated with the spin precession
torque to the global potential energy of the system as part of
:doc:`thermodynamic output <thermo_style>`. The default setting for
this fix is :doc:`fix_modify energy no <fix_modify>`.

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@ -240,7 +240,7 @@ compute temperature on a subset of atoms.
keyword will be unaffected by the *temp* setting.
The cumulative energy change in the system imposed by these fixes, due
to thermostatting and/or barostating, are included in the
to thermostatting and/or barostatting, are included in the
:doc:`thermodynamic output <thermo_style>` keywords *ecouple* and
*econserve*. See the :doc:`thermo_style <thermo_style>` doc page for
details.

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@ -131,7 +131,7 @@ The :doc:`fix_modify <fix_modify>` *energy* option is supported by
these fixes to add the energy of interaction between atoms and all the
specified walls or region wall to the global potential energy of the
system as part of :doc:`thermodynamic output <thermo_style>`. The
default settings for thes fixes are :doc:`fix_modify energy no
default settings for these fixes are :doc:`fix_modify energy no
<fix_modify>`.
The :doc:`fix_modify <fix_modify>` *respa* option is supported by

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@ -508,6 +508,7 @@ cpp
cpu
createatoms
createAtoms
CreateIDs
crespi
Crespi
Critchley
@ -788,6 +789,7 @@ ees
eFF
efield
effm
eflag
eflux
eg
Eggebrecht
@ -2681,6 +2683,7 @@ rfile
rg
Rg
Rhaphson
Rhe
rheological
rheology
rhodo
@ -3335,6 +3338,7 @@ verlet
Verlet
versa
ves
vflag
vhi
vibrational
Vij