address a whole bunch of spelling issues that suddenly popped up.
This commit is contained in:
@ -90,7 +90,7 @@ The fix must also do the following:
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The fix must also specify whether (by default) to include or exclude
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these contributions to the global/peratom energy/virial of the system.
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For the fix to include the contributions, set either of both of these
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variables in the contructor:
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variables in the constructor:
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* *thermo_energy* = 1, for global and peratom energy
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* *thermo_virial* = 1, for global and peratom virial
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@ -103,7 +103,7 @@ uninterrupted fashion.
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The :doc:`fix_modify <fix_modify>` *energy* option is supported by
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this fix to add the potential energy of the CMAP interactions to both
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the global potential energy and peratom potential energies of the
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sysstem as part of :doc:`thermodynamic output <thermo_style>` or
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system as part of :doc:`thermodynamic output <thermo_style>` or
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output by the :doc:`compute pe/atom <compute_pe_atom>` command. The
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default setting for this fix is :doc:`fix_modify energy yes
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<fix_modify>`.
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@ -115,7 +115,7 @@ in a pair of double quotes ("), or can span multiple lines when bracketed
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by a pair of triple double quotes (""", like python embedded documentation).
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This fix computes a global scalar which can be accessed by various
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:doc:`output commands <Howto_output>`. The scalar is the Covars
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:doc:`output commands <Howto_output>`. The scalar is the Colvars
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energy mentioned above. The scalar value calculated by this fix is
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"extensive".
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@ -83,7 +83,7 @@ appropriate fix.
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.. note::
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For most fixes that suppport the *energy* keyword, the default
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For most fixes that support the *energy* keyword, the default
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setting is *no*. For a few it is *yes*, when a user would expect
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that to be the case. The doc page of each fix gives the default.
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@ -108,7 +108,7 @@ option to include or exclude the contribution from fixes.
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.. note::
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For most fixes that suppport the *virial* keyword, the default
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For most fixes that support the *virial* keyword, the default
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setting is *no*. For a few it is *yes*, when a user would expect
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that to be the case. The doc page of each fix gives the default.
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@ -149,7 +149,7 @@ No information about this fix is written to :doc:`binary restart files
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The :doc:`fix_modify <fix_modify>` *energy* option is supported by
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this fix to add the potential energy of atom interactions with the
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grain bounadry driving force to the global potential energy of the
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grain boundary driving force to the global potential energy of the
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system as part of :doc:`thermodynamic output <thermo_style>`. The
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default setting for this fix is :doc:`fix_modify energy no
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<fix_modify>`.
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@ -103,7 +103,7 @@ files <restart>`.
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The :doc:`fix_modify <fix_modify>` *energy* option is supported by
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this fix to add the potential energy of atom interactions with the
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grain bounadry driving force to the global potential energy of the
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grain boundary driving force to the global potential energy of the
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system as part of :doc:`thermodynamic output <thermo_style>`. The
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default setting for this fix is :doc:`fix_modify energy no
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<fix_modify>`.
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@ -141,7 +141,7 @@ No information about this fix is written to :doc:`binary restart files
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<restart>`.
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The :doc:`fix_modify <fix_modify>` *energy* option is supported by
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this fix to add the energy assocatiated with the spin precession
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this fix to add the energy associated with the spin precession
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torque to the global potential energy of the system as part of
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:doc:`thermodynamic output <thermo_style>`. The default setting for
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this fix is :doc:`fix_modify energy no <fix_modify>`.
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@ -240,7 +240,7 @@ compute temperature on a subset of atoms.
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keyword will be unaffected by the *temp* setting.
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The cumulative energy change in the system imposed by these fixes, due
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to thermostatting and/or barostating, are included in the
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to thermostatting and/or barostatting, are included in the
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:doc:`thermodynamic output <thermo_style>` keywords *ecouple* and
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*econserve*. See the :doc:`thermo_style <thermo_style>` doc page for
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details.
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@ -131,7 +131,7 @@ The :doc:`fix_modify <fix_modify>` *energy* option is supported by
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these fixes to add the energy of interaction between atoms and all the
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specified walls or region wall to the global potential energy of the
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system as part of :doc:`thermodynamic output <thermo_style>`. The
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default settings for thes fixes are :doc:`fix_modify energy no
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default settings for these fixes are :doc:`fix_modify energy no
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<fix_modify>`.
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The :doc:`fix_modify <fix_modify>` *respa* option is supported by
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@ -508,6 +508,7 @@ cpp
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cpu
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createatoms
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createAtoms
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CreateIDs
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crespi
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Crespi
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Critchley
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@ -788,6 +789,7 @@ ees
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eFF
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efield
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effm
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eflag
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eflux
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eg
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Eggebrecht
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@ -2681,6 +2683,7 @@ rfile
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rg
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Rg
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Rhaphson
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Rhe
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rheological
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rheology
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rhodo
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@ -3335,6 +3338,7 @@ verlet
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Verlet
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versa
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ves
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vflag
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vhi
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vibrational
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Vij
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