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Merge remote-tracking branch 'origin/master' into python_unittests

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This commit is contained in:
Richard Berger
2021-03-25 20:58:28 -04:00
parent cb25e4aa39 47b7653d4d
commit 439bc4bb8e
24 changed files with 1650 additions and 1621 deletions
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3
src/USER-REACTION/fix_bond_react.cpp
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@ -965,7 +965,7 @@ void FixBondReact::post_integrate()
// forward comm of partner, so ghosts have it // forward comm of partner, so ghosts have it
commflag = 2; commflag = 2;
comm->forward_comm_fix(this,2); comm->forward_comm_fix(this,1);
// consider for reaction: // consider for reaction:
// only if both atoms list each other as winning bond partner // only if both atoms list each other as winning bond partner
@ -2566,6 +2566,7 @@ void FixBondReact::unlimit_bond()
} }
// really should only communicate this per-atom property, not entire reneighboring // really should only communicate this per-atom property, not entire reneighboring
MPI_Allreduce(MPI_IN_PLACE,&unlimitflag,1,MPI_INT,MPI_MAX,world);
if (unlimitflag) next_reneighbor = update->ntimestep; if (unlimitflag) next_reneighbor = update->ntimestep;
} }

85
unittest/formats/CMakeLists.txt
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@ -40,70 +40,55 @@ set_tests_properties(DumpAtom PROPERTIES ENVIRONMENT "LAMMPS_POTENTIALS=${LAMMPS
if(PKG_COMPRESS) if(PKG_COMPRESS)
find_program(GZIP_BINARY NAMES gzip REQUIRED) find_program(GZIP_BINARY NAMES gzip REQUIRED)
add_executable(test_dump_atom_gz test_dump_atom_gz.cpp) add_executable(test_dump_atom_compressed test_dump_atom_compressed.cpp compressed_dump_test_main.cpp)
target_link_libraries(test_dump_atom_gz PRIVATE lammps GTest::GMock GTest::GTest) target_link_libraries(test_dump_atom_compressed PRIVATE lammps GTest::GMock GTest::GTest)
add_test(NAME DumpAtomGZ COMMAND test_dump_atom_gz WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR})
set_tests_properties(DumpAtomGZ PROPERTIES ENVIRONMENT "LAMMPS_POTENTIALS=${LAMMPS_POTENTIALS_DIR}")
set_tests_properties(DumpAtomGZ PROPERTIES ENVIRONMENT "GZIP_BINARY=${GZIP_BINARY}")
add_executable(test_dump_custom_gz test_dump_custom_gz.cpp) add_executable(test_dump_custom_compressed test_dump_custom_compressed.cpp compressed_dump_test_main.cpp)
target_link_libraries(test_dump_custom_gz PRIVATE lammps GTest::GMock GTest::GTest) target_link_libraries(test_dump_custom_compressed PRIVATE lammps GTest::GMock GTest::GTest)
add_test(NAME DumpCustomGZ COMMAND test_dump_custom_gz WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR})
set_tests_properties(DumpCustomGZ PROPERTIES ENVIRONMENT "LAMMPS_POTENTIALS=${LAMMPS_POTENTIALS_DIR}")
set_tests_properties(DumpCustomGZ PROPERTIES ENVIRONMENT "GZIP_BINARY=${GZIP_BINARY}")
add_executable(test_dump_cfg_gz test_dump_cfg_gz.cpp) add_executable(test_dump_cfg_compressed test_dump_cfg_compressed.cpp compressed_dump_test_main.cpp)
target_link_libraries(test_dump_cfg_gz PRIVATE lammps GTest::GMock GTest::GTest) target_link_libraries(test_dump_cfg_compressed PRIVATE lammps GTest::GMock GTest::GTest)
add_test(NAME DumpCfgGZ COMMAND test_dump_cfg_gz WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR})
set_tests_properties(DumpCfgGZ PROPERTIES ENVIRONMENT "LAMMPS_POTENTIALS=${LAMMPS_POTENTIALS_DIR}")
set_tests_properties(DumpCfgGZ PROPERTIES ENVIRONMENT "GZIP_BINARY=${GZIP_BINARY}")
add_executable(test_dump_xyz_gz test_dump_xyz_gz.cpp) add_executable(test_dump_local_compressed test_dump_local_compressed.cpp compressed_dump_test_main.cpp)
target_link_libraries(test_dump_xyz_gz PRIVATE lammps GTest::GMock GTest::GTest) target_link_libraries(test_dump_local_compressed PRIVATE lammps GTest::GMock GTest::GTest)
add_test(NAME DumpXYZGZ COMMAND test_dump_xyz_gz WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR})
set_tests_properties(DumpXYZGZ PROPERTIES ENVIRONMENT "LAMMPS_POTENTIALS=${LAMMPS_POTENTIALS_DIR}")
set_tests_properties(DumpXYZGZ PROPERTIES ENVIRONMENT "GZIP_BINARY=${GZIP_BINARY}")
add_executable(test_dump_local_gz test_dump_local_gz.cpp) add_executable(test_dump_xyz_compressed test_dump_xyz_compressed.cpp compressed_dump_test_main.cpp)
target_link_libraries(test_dump_local_gz PRIVATE lammps GTest::GMock GTest::GTest) target_link_libraries(test_dump_xyz_compressed PRIVATE lammps GTest::GMock GTest::GTest)
add_test(NAME DumpLocalGZ COMMAND test_dump_local_gz WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR})
set_tests_properties(DumpLocalGZ PROPERTIES ENVIRONMENT "LAMMPS_POTENTIALS=${LAMMPS_POTENTIALS_DIR}") add_test(NAME DumpAtomGZ COMMAND test_dump_atom_compressed gz WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR})
set_tests_properties(DumpLocalGZ PROPERTIES ENVIRONMENT "GZIP_BINARY=${GZIP_BINARY}") set_tests_properties(DumpAtomGZ PROPERTIES ENVIRONMENT "LAMMPS_POTENTIALS=${LAMMPS_POTENTIALS_DIR};COMPRESS_BINARY=${GZIP_BINARY}")
add_test(NAME DumpCustomGZ COMMAND test_dump_custom_compressed gz WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR})
set_tests_properties(DumpCustomGZ PROPERTIES ENVIRONMENT "LAMMPS_POTENTIALS=${LAMMPS_POTENTIALS_DIR};COMPRESS_BINARY=${GZIP_BINARY}")
add_test(NAME DumpCfgGZ COMMAND test_dump_cfg_compressed gz WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR})
set_tests_properties(DumpCfgGZ PROPERTIES ENVIRONMENT "LAMMPS_POTENTIALS=${LAMMPS_POTENTIALS_DIR};COMPRESS_BINARY=${GZIP_BINARY}")
add_test(NAME DumpLocalGZ COMMAND test_dump_local_compressed gz WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR})
set_tests_properties(DumpLocalGZ PROPERTIES ENVIRONMENT "LAMMPS_POTENTIALS=${LAMMPS_POTENTIALS_DIR};COMPRESS_BINARY=${GZIP_BINARY}")
add_test(NAME DumpXYZGZ COMMAND test_dump_xyz_compressed gz WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR})
set_tests_properties(DumpXYZGZ PROPERTIES ENVIRONMENT "LAMMPS_POTENTIALS=${LAMMPS_POTENTIALS_DIR};COMPRESS_BINARY=${GZIP_BINARY}")
find_package(PkgConfig REQUIRED) find_package(PkgConfig REQUIRED)
pkg_check_modules(Zstd IMPORTED_TARGET libzstd>=1.4) pkg_check_modules(Zstd IMPORTED_TARGET libzstd>=1.4)
find_program(ZSTD_BINARY NAMES zstd) find_program(ZSTD_BINARY NAMES zstd)
if(Zstd_FOUND AND ZSTD_BINARY) if(Zstd_FOUND AND ZSTD_BINARY)
add_executable(test_dump_atom_zstd test_dump_atom_zstd.cpp) add_test(NAME DumpAtomZstd COMMAND test_dump_atom_compressed zstd WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR})
target_link_libraries(test_dump_atom_zstd PRIVATE lammps GTest::GMock GTest::GTest) set_tests_properties(DumpAtomZstd PROPERTIES ENVIRONMENT "LAMMPS_POTENTIALS=${LAMMPS_POTENTIALS_DIR};COMPRESS_BINARY=${ZSTD_BINARY}")
add_test(NAME DumpAtomZstd COMMAND test_dump_atom_zstd WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR})
set_tests_properties(DumpAtomZstd PROPERTIES ENVIRONMENT "LAMMPS_POTENTIALS=${LAMMPS_POTENTIALS_DIR}")
set_tests_properties(DumpAtomZstd PROPERTIES ENVIRONMENT "ZSTD_BINARY=${ZSTD_BINARY}")
add_executable(test_dump_custom_zstd test_dump_custom_zstd.cpp) add_test(NAME DumpCustomZstd COMMAND test_dump_custom_compressed zstd WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR})
target_link_libraries(test_dump_custom_zstd PRIVATE lammps GTest::GMock GTest::GTest) set_tests_properties(DumpCustomZstd PROPERTIES ENVIRONMENT "LAMMPS_POTENTIALS=${LAMMPS_POTENTIALS_DIR};COMPRESS_BINARY=${ZSTD_BINARY}")
add_test(NAME DumpCustomZstd COMMAND test_dump_custom_zstd WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR})
set_tests_properties(DumpCustomZstd PROPERTIES ENVIRONMENT "LAMMPS_POTENTIALS=${LAMMPS_POTENTIALS_DIR}")
set_tests_properties(DumpCustomZstd PROPERTIES ENVIRONMENT "ZSTD_BINARY=${ZSTD_BINARY}")
add_executable(test_dump_cfg_zstd test_dump_cfg_zstd.cpp) add_test(NAME DumpCfgZstd COMMAND test_dump_cfg_compressed zstd WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR})
target_link_libraries(test_dump_cfg_zstd PRIVATE lammps GTest::GMock GTest::GTest) set_tests_properties(DumpCfgZstd PROPERTIES ENVIRONMENT "LAMMPS_POTENTIALS=${LAMMPS_POTENTIALS_DIR};COMPRESS_BINARY=${ZSTD_BINARY}")
add_test(NAME DumpCfgZstd COMMAND test_dump_cfg_zstd WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR})
set_tests_properties(DumpCfgZstd PROPERTIES ENVIRONMENT "LAMMPS_POTENTIALS=${LAMMPS_POTENTIALS_DIR}")
set_tests_properties(DumpCfgZstd PROPERTIES ENVIRONMENT "ZSTD_BINARY=${ZSTD_BINARY}")
add_executable(test_dump_xyz_zstd test_dump_xyz_zstd.cpp) add_test(NAME DumpLocalZstd COMMAND test_dump_local_compressed zstd WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR})
target_link_libraries(test_dump_xyz_zstd PRIVATE lammps GTest::GMock GTest::GTest) set_tests_properties(DumpLocalZstd PROPERTIES ENVIRONMENT "LAMMPS_POTENTIALS=${LAMMPS_POTENTIALS_DIR};COMPRESS_BINARY=${ZSTD_BINARY}")
add_test(NAME DumpXYZZstd COMMAND test_dump_xyz_zstd WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR})
set_tests_properties(DumpXYZZstd PROPERTIES ENVIRONMENT "LAMMPS_POTENTIALS=${LAMMPS_POTENTIALS_DIR}")
set_tests_properties(DumpXYZZstd PROPERTIES ENVIRONMENT "ZSTD_BINARY=${ZSTD_BINARY}")
add_executable(test_dump_local_zstd test_dump_local_zstd.cpp) add_test(NAME DumpXYZZstd COMMAND test_dump_xyz_compressed zstd WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR})
target_link_libraries(test_dump_local_zstd PRIVATE lammps GTest::GMock GTest::GTest) set_tests_properties(DumpXYZZstd PROPERTIES ENVIRONMENT "LAMMPS_POTENTIALS=${LAMMPS_POTENTIALS_DIR};COMPRESS_BINARY=${ZSTD_BINARY}")
add_test(NAME DumpLocalZstd COMMAND test_dump_local_zstd WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR})
set_tests_properties(DumpLocalZstd PROPERTIES ENVIRONMENT "LAMMPS_POTENTIALS=${LAMMPS_POTENTIALS_DIR}")
set_tests_properties(DumpLocalZstd PROPERTIES ENVIRONMENT "ZSTD_BINARY=${ZSTD_BINARY}")
endif() endif()
endif() endif()

107
unittest/formats/compressed_dump_test.h Normal file
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@ -0,0 +1,107 @@
/* ----------------------------------------------------------------------
LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
http://lammps.sandia.gov, Sandia National Laboratories
Steve Plimpton, sjplimp@sandia.gov
Copyright (2003) Sandia Corporation. Under the terms of Contract
DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
certain rights in this software. This software is distributed under
the GNU General Public License.
See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */
#ifndef TESTCASE_COMPRESSED_DUMP__H
#define TESTCASE_COMPRESSED_DUMP__H
#include "../testing/core.h"
#include "../testing/systems/melt.h"
#include <string>
extern const char * COMPRESS_SUFFIX;
extern const char * COMPRESS_EXTENSION;
extern char * COMPRESS_BINARY;
class CompressedDumpTest : public MeltTest {
protected:
std::string dump_style;
std::string compression_style;
public:
CompressedDumpTest(const std::string & dump_style) : MeltTest(), dump_style(dump_style) {
compression_style = fmt::format("{}/{}", dump_style, COMPRESS_SUFFIX);
}
std::string text_dump_filename(std::string ident) {
return fmt::format("dump_{}_text_{}", COMPRESS_SUFFIX, ident);
}
std::string compressed_dump_filename(std::string ident) {
return fmt::format("dump_{}_compressed_{}.{}", COMPRESS_SUFFIX, ident, COMPRESS_EXTENSION);
}
std::string converted_dump_filename(std::string ident) {
return fmt::format("dump_{}_compressed_{}", COMPRESS_SUFFIX, ident);
}
void enable_triclinic()
{
if (!verbose) ::testing::internal::CaptureStdout();
command("change_box all triclinic");
if (!verbose) ::testing::internal::GetCapturedStdout();
}
void generate_dump(std::string dump_file, std::string dump_modify_options, int ntimesteps)
{
if (!verbose) ::testing::internal::CaptureStdout();
command(fmt::format("dump id all {} 1 {}", dump_style, dump_file));
if (!dump_modify_options.empty()) {
command(fmt::format("dump_modify id {}", dump_modify_options));
}
command(fmt::format("run {}", ntimesteps));
if (!verbose) ::testing::internal::GetCapturedStdout();
}
void generate_text_and_compressed_dump(std::string text_file, std::string compressed_file,
std::string dump_options, std::string dump_modify_options, int ntimesteps)
{
generate_text_and_compressed_dump(text_file, compressed_file,
dump_options, dump_options,
dump_modify_options, dump_modify_options, ntimesteps);
}
void generate_text_and_compressed_dump(std::string text_file, std::string compressed_file,
std::string text_options, std::string compressed_options,
std::string text_modify_options, std::string compressed_modify_options,
int ntimesteps)
{
if (!verbose) ::testing::internal::CaptureStdout();
command(fmt::format("dump id0 all {} 1 {} {}", dump_style, text_file, text_options));
command(fmt::format("dump id1 all {} 1 {} {}", compression_style, compressed_file, compressed_options));
if (!text_modify_options.empty()) {
command(fmt::format("dump_modify id0 {}", text_modify_options));
}
if (!compressed_modify_options.empty()) {
command(fmt::format("dump_modify id1 {}", compressed_modify_options));
}
command(fmt::format("run {}", ntimesteps));
if (!verbose) ::testing::internal::GetCapturedStdout();
}
std::string convert_compressed_to_text(std::string compressed_file)
{
if (!verbose) ::testing::internal::CaptureStdout();
std::string converted_file = compressed_file.substr(0, compressed_file.find_last_of('.'));
std::string cmdline =
fmt::format("{} -d -c {} > {}", COMPRESS_BINARY, compressed_file, converted_file);
system(cmdline.c_str());
if (!verbose) ::testing::internal::GetCapturedStdout();
return converted_file;
}
};
#endif

66
unittest/formats/compressed_dump_test_main.cpp Normal file
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@ -0,0 +1,66 @@
/* ----------------------------------------------------------------------
LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
http://lammps.sandia.gov, Sandia National Laboratories
Steve Plimpton, sjplimp@sandia.gov
Copyright (2003) Sandia Corporation. Under the terms of Contract
DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
certain rights in this software. This software is distributed under
the GNU General Public License.
See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */
#include "compressed_dump_test.h"
#include "../testing/utils.h"
#include "fmt/format.h"
#include "utils.h"
#include "gmock/gmock.h"
#include "gtest/gtest.h"
#include <string>
const char * COMPRESS_SUFFIX = nullptr;
const char * COMPRESS_EXTENSION = nullptr;
char * COMPRESS_BINARY = nullptr;
bool verbose = false;
int main(int argc, char **argv)
{
MPI_Init(&argc, &argv);
::testing::InitGoogleMock(&argc, argv);
if (argc < 2) {
std::cerr << "usage: " << argv[0] << " (gz|zstd)\n\n" << std::endl;
return 1;
}
if(strcmp(argv[1], "gz") == 0) {
COMPRESS_SUFFIX = "gz";
COMPRESS_EXTENSION = "gz";
} else if(strcmp(argv[1], "zstd") == 0) {
COMPRESS_SUFFIX = "zstd";
COMPRESS_EXTENSION = "zst";
} else {
std::cerr << "usage: " << argv[0] << " (gz|zstd)\n\n" << std::endl;
return 1;
}
COMPRESS_BINARY = getenv("COMPRESS_BINARY");
// handle arguments passed via environment variable
if (const char *var = getenv("TEST_ARGS")) {
std::vector<std::string> env = utils::split_words(var);
for (auto arg : env) {
if (arg == "-v") {
verbose = true;
}
}
}
if ((argc > 1) && (strcmp(argv[1], "-v") == 0)) verbose = true;
int rv = RUN_ALL_TESTS();
MPI_Finalize();
return rv;
}

1
unittest/formats/test_dump_atom.cpp
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@ -24,6 +24,7 @@
using ::testing::Eq; using ::testing::Eq;
char *BINARY2TXT_BINARY = nullptr; char *BINARY2TXT_BINARY = nullptr;
bool verbose = false;
class DumpAtomTest : public MeltTest { class DumpAtomTest : public MeltTest {
std::string dump_style = "atom"; std::string dump_style = "atom";

388
unittest/formats/test_dump_atom_compressed.cpp Normal file
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@ -0,0 +1,388 @@
/* ----------------------------------------------------------------------
LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
https://lammps.sandia.gov/, Sandia National Laboratories
Steve Plimpton, sjplimp@sandia.gov
Copyright (2003) Sandia Corporation. Under the terms of Contract
DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
certain rights in this software. This software is distributed under
the GNU General Public License.
See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */
#include "../testing/utils.h"
#include "compressed_dump_test.h"
#include "fmt/format.h"
#include "utils.h"
#include "gmock/gmock.h"
#include "gtest/gtest.h"
#include <string>
using ::testing::Eq;
class DumpAtomCompressTest : public CompressedDumpTest {
public:
DumpAtomCompressTest() : CompressedDumpTest("atom") {
}
};
//-------------------------------------------------------------------------------------------------
// compressed files
//-------------------------------------------------------------------------------------------------
TEST_F(DumpAtomCompressTest, compressed_run0)
{
if (!COMPRESS_BINARY) GTEST_SKIP();
auto text_file = text_dump_filename("run0.melt");
auto compressed_file = compressed_dump_filename("run0.melt");
if(compression_style == "atom/zstd") {
generate_text_and_compressed_dump(text_file, compressed_file, "", "", "", "checksum yes", 0);
} else {
generate_text_and_compressed_dump(text_file, compressed_file, "", "", 0);
}
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_THAT(converted_file, Eq(converted_dump_filename("run0.melt")));
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}
TEST_F(DumpAtomCompressTest, compressed_multi_file_run1)
{
if (!COMPRESS_BINARY) GTEST_SKIP();
auto base_name = "multi_file_run1_*.melt";
auto base_name_0 = "multi_file_run1_0.melt";
auto base_name_1 = "multi_file_run1_1.melt";
auto text_file = text_dump_filename(base_name);
auto text_file_0 = text_dump_filename(base_name_0);
auto text_file_1 = text_dump_filename(base_name_1);
auto compressed_file = compressed_dump_filename(base_name);
auto compressed_file_0 = compressed_dump_filename(base_name_0);
auto compressed_file_1 = compressed_dump_filename(base_name_1);
if(compression_style == "atom/zstd") {
generate_text_and_compressed_dump(text_file, compressed_file, "", "", "", "checksum no", 1);
} else {
generate_text_and_compressed_dump(text_file, compressed_file, "", "", 1);
}
TearDown();
auto converted_file_0 = convert_compressed_to_text(compressed_file_0);
auto converted_file_1 = convert_compressed_to_text(compressed_file_1);
ASSERT_THAT(converted_file_0, Eq(converted_dump_filename(base_name_0)));
ASSERT_THAT(converted_file_1, Eq(converted_dump_filename(base_name_1)));
ASSERT_FILE_EXISTS(converted_file_0);
ASSERT_FILE_EXISTS(converted_file_1);
ASSERT_FILE_EQUAL(text_file_0, converted_file_0);
ASSERT_FILE_EQUAL(text_file_1, converted_file_1);
delete_file(text_file_0);
delete_file(text_file_1);
delete_file(compressed_file_0);
delete_file(compressed_file_1);
delete_file(converted_file_0);
delete_file(converted_file_1);
}
TEST_F(DumpAtomCompressTest, compressed_multi_file_with_pad_run1)
{
if (!COMPRESS_BINARY) GTEST_SKIP();
auto base_name = "multi_file_pad_run1_*.melt";
auto base_name_0 = "multi_file_pad_run1_000.melt";
auto base_name_1 = "multi_file_pad_run1_001.melt";
auto text_file = text_dump_filename(base_name);
auto text_file_0 = text_dump_filename(base_name_0);
auto text_file_1 = text_dump_filename(base_name_1);
auto compressed_file = compressed_dump_filename(base_name);
auto compressed_file_0 = compressed_dump_filename(base_name_0);
auto compressed_file_1 = compressed_dump_filename(base_name_1);
generate_text_and_compressed_dump(text_file, compressed_file, "", "pad 3", 1);
TearDown();
ASSERT_FILE_EXISTS(text_file_0);
ASSERT_FILE_EXISTS(text_file_1);
ASSERT_FILE_EXISTS(compressed_file_0);
ASSERT_FILE_EXISTS(compressed_file_1);
auto converted_file_0 = convert_compressed_to_text(compressed_file_0);
auto converted_file_1 = convert_compressed_to_text(compressed_file_1);
ASSERT_THAT(converted_file_0, Eq(converted_dump_filename(base_name_0)));
ASSERT_THAT(converted_file_1, Eq(converted_dump_filename(base_name_1)));
ASSERT_FILE_EXISTS(converted_file_0);
ASSERT_FILE_EXISTS(converted_file_1);
ASSERT_FILE_EQUAL(text_file_0, converted_file_0);
ASSERT_FILE_EQUAL(text_file_1, converted_file_1);
delete_file(text_file_0);
delete_file(text_file_1);
delete_file(compressed_file_0);
delete_file(compressed_file_1);
delete_file(converted_file_0);
delete_file(converted_file_1);
}
TEST_F(DumpAtomCompressTest, compressed_multi_file_with_maxfiles_run1)
{
if (!COMPRESS_BINARY) GTEST_SKIP();
auto base_name = "multi_file_maxfiles_run1_*.melt";
auto base_name_0 = "multi_file_maxfiles_run1_0.melt";
auto base_name_1 = "multi_file_maxfiles_run1_1.melt";
auto base_name_2 = "multi_file_maxfiles_run1_2.melt";
auto text_file = text_dump_filename(base_name);
auto text_file_0 = text_dump_filename(base_name_0);
auto text_file_1 = text_dump_filename(base_name_1);
auto text_file_2 = text_dump_filename(base_name_2);
auto compressed_file = compressed_dump_filename(base_name);
auto compressed_file_0 = compressed_dump_filename(base_name_0);
auto compressed_file_1 = compressed_dump_filename(base_name_1);
auto compressed_file_2 = compressed_dump_filename(base_name_2);
generate_text_and_compressed_dump(text_file, compressed_file, "", "maxfiles 2", 2);
TearDown();
ASSERT_FILE_NOT_EXISTS(text_file_0);
ASSERT_FILE_EXISTS(text_file_1);
ASSERT_FILE_EXISTS(text_file_2);
ASSERT_FILE_NOT_EXISTS(compressed_file_0);
ASSERT_FILE_EXISTS(compressed_file_1);
ASSERT_FILE_EXISTS(compressed_file_2);
auto converted_file_1 = convert_compressed_to_text(compressed_file_1);
auto converted_file_2 = convert_compressed_to_text(compressed_file_2);
ASSERT_THAT(converted_file_1, Eq(converted_dump_filename(base_name_1)));
ASSERT_THAT(converted_file_2, Eq(converted_dump_filename(base_name_2)));
ASSERT_FILE_EXISTS(converted_file_1);
ASSERT_FILE_EXISTS(converted_file_2);
ASSERT_FILE_EQUAL(text_file_1, converted_file_1);
ASSERT_FILE_EQUAL(text_file_2, converted_file_2);
delete_file(text_file_1);
delete_file(text_file_2);
delete_file(compressed_file_1);
delete_file(compressed_file_2);
delete_file(converted_file_1);
delete_file(converted_file_2);
}
TEST_F(DumpAtomCompressTest, compressed_with_units_run0)
{
if (!COMPRESS_BINARY) GTEST_SKIP();
auto base_name = "with_units_run0.melt";
auto text_file = text_dump_filename(base_name);
auto compressed_file = compressed_dump_filename(base_name);
generate_text_and_compressed_dump(text_file, compressed_file, "", "scale no units yes", 0);
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}
TEST_F(DumpAtomCompressTest, compressed_with_time_run0)
{
if (!COMPRESS_BINARY) GTEST_SKIP();
auto base_name = "with_time_run0.melt";
auto text_file = text_dump_filename(base_name);
auto compressed_file = compressed_dump_filename(base_name);
generate_text_and_compressed_dump(text_file, compressed_file, "", "scale no time yes", 0);
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}
TEST_F(DumpAtomCompressTest, compressed_triclinic_run0)
{
if (!COMPRESS_BINARY) GTEST_SKIP();
auto base_name = "tri_run0.melt";
auto text_file = text_dump_filename(base_name);
auto compressed_file = compressed_dump_filename(base_name);
enable_triclinic();
generate_text_and_compressed_dump(text_file, compressed_file, "", "", 0);
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}
TEST_F(DumpAtomCompressTest, compressed_triclinic_with_units_run0)
{
if (!COMPRESS_BINARY) GTEST_SKIP();
auto base_name = "tri_with_units_run0.melt";
auto text_file = text_dump_filename(base_name);
auto compressed_file = compressed_dump_filename(base_name);
enable_triclinic();
generate_text_and_compressed_dump(text_file, compressed_file, "", "scale no units yes", 0);
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}
TEST_F(DumpAtomCompressTest, compressed_triclinic_with_time_run0)
{
if (!COMPRESS_BINARY) GTEST_SKIP();
auto base_name = "tri_with_time_run0.melt";
auto text_file = text_dump_filename(base_name);
auto compressed_file = compressed_dump_filename(base_name);
enable_triclinic();
generate_text_and_compressed_dump(text_file, compressed_file, "", "scale no time yes", 0);
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}
TEST_F(DumpAtomCompressTest, compressed_triclinic_with_image_run0)
{
if (!COMPRESS_BINARY) GTEST_SKIP();
auto base_name = "tri_with_image_run0.melt";
auto text_file = text_dump_filename(base_name);
auto compressed_file = compressed_dump_filename(base_name);
enable_triclinic();
generate_text_and_compressed_dump(text_file, compressed_file, "", "image yes", 0);
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}
TEST_F(DumpAtomCompressTest, compressed_modify_bad_param)
{
if (compression_style != "atom/gz") GTEST_SKIP();
if (!verbose) ::testing::internal::CaptureStdout();
command(fmt::format("dump id1 all {} 1 {}", compression_style, compressed_dump_filename("modify_bad_param_run0_*.melt")));
if (!verbose) ::testing::internal::GetCapturedStdout();
TEST_FAILURE(".*ERROR: Illegal dump_modify command: compression level must in the range of.*",
command("dump_modify id1 compression_level 12");
);
}
TEST_F(DumpAtomCompressTest, compressed_modify_multi_bad_param)
{
if (compression_style != "atom/gz") GTEST_SKIP();
if (!verbose) ::testing::internal::CaptureStdout();
command(fmt::format("dump id1 all {} 1 {}", compression_style, compressed_dump_filename("modify_multi_bad_param_run0_*.melt")));
if (!verbose) ::testing::internal::GetCapturedStdout();
TEST_FAILURE(".*ERROR: Illegal dump_modify command: compression level must in the range of.*",
command("dump_modify id1 pad 3 compression_level 12");
);
}
TEST_F(DumpAtomCompressTest, compressed_modify_clevel_run0)
{
if (!COMPRESS_BINARY) GTEST_SKIP();
auto base_name = "modify_clevel_run0.melt";
auto text_file = text_dump_filename(base_name);
auto compressed_file = compressed_dump_filename(base_name);
generate_text_and_compressed_dump(text_file, compressed_file, "", "", "", "compression_level 3", 0);
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_THAT(converted_file, Eq(converted_dump_filename(base_name)));
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}

277
unittest/formats/test_dump_atom_gz.cpp
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@ -1,277 +0,0 @@
/* ----------------------------------------------------------------------
LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
https://lammps.sandia.gov/, Sandia National Laboratories
Steve Plimpton, sjplimp@sandia.gov
Copyright (2003) Sandia Corporation. Under the terms of Contract
DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
certain rights in this software. This software is distributed under
the GNU General Public License.
See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */
#include "../testing/core.h"
#include "../testing/systems/melt.h"
#include "../testing/utils.h"
#include "fmt/format.h"
#include "utils.h"
#include "gmock/gmock.h"
#include "gtest/gtest.h"
#include <string>
char *GZIP_BINARY = nullptr;
using ::testing::Eq;
class DumpAtomGZTest : public MeltTest {
std::string dump_style = "atom";
public:
void enable_triclinic()
{
if (!verbose) ::testing::internal::CaptureStdout();
command("change_box all triclinic");
if (!verbose) ::testing::internal::GetCapturedStdout();
}
void generate_dump(std::string dump_file, std::string dump_modify_options, int ntimesteps)
{
if (!verbose) ::testing::internal::CaptureStdout();
command(fmt::format("dump id all {} 1 {}", dump_style, dump_file));
if (!dump_modify_options.empty()) {
command(fmt::format("dump_modify id {}", dump_modify_options));
}
command(fmt::format("run {}", ntimesteps));
if (!verbose) ::testing::internal::GetCapturedStdout();
}
void generate_text_and_compressed_dump(std::string text_file, std::string compressed_file,
std::string compression_style,
std::string dump_modify_options, int ntimesteps)
{
if (!verbose) ::testing::internal::CaptureStdout();
command(fmt::format("dump id0 all {} 1 {}", dump_style, text_file));
command(fmt::format("dump id1 all {} 1 {}", compression_style, compressed_file));
if (!dump_modify_options.empty()) {
command(fmt::format("dump_modify id0 {}", dump_modify_options));
command(fmt::format("dump_modify id1 {}", dump_modify_options));
}
command(fmt::format("run {}", ntimesteps));
if (!verbose) ::testing::internal::GetCapturedStdout();
}
std::string convert_compressed_to_text(std::string compressed_file)
{
if (!verbose) ::testing::internal::CaptureStdout();
std::string converted_file = compressed_file.substr(0, compressed_file.find_last_of('.'));
std::string cmdline =
fmt::format("{} -d -c {} > {}", GZIP_BINARY, compressed_file, converted_file);
system(cmdline.c_str());
if (!verbose) ::testing::internal::GetCapturedStdout();
return converted_file;
}
};
//-------------------------------------------------------------------------------------------------
// GZ compressed files
//-------------------------------------------------------------------------------------------------
TEST_F(DumpAtomGZTest, compressed_run0)
{
if (!GZIP_BINARY) GTEST_SKIP();
auto text_file = "dump_gz_text_run0.melt";
auto compressed_file = "dump_gz_compressed_run0.melt.gz";
generate_text_and_compressed_dump(text_file, compressed_file, "atom/gz", "", 0);
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_THAT(converted_file, Eq("dump_gz_compressed_run0.melt"));
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}
TEST_F(DumpAtomGZTest, compressed_with_units_run0)
{
if (!GZIP_BINARY) GTEST_SKIP();
auto text_file = "dump_gz_text_with_units_run0.melt";
auto compressed_file = "dump_gz_compressed_with_units_run0.melt.gz";
generate_text_and_compressed_dump(text_file, compressed_file, "atom/gz", "scale no units yes",
0);
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}
TEST_F(DumpAtomGZTest, compressed_with_time_run0)
{
if (!GZIP_BINARY) GTEST_SKIP();
auto text_file = "dump_gz_text_with_time_run0.melt";
auto compressed_file = "dump_gz_compressed_with_time_run0.melt.gz";
generate_text_and_compressed_dump(text_file, compressed_file, "atom/gz", "scale no time yes",
0);
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}
TEST_F(DumpAtomGZTest, compressed_triclinic_run0)
{
if (!GZIP_BINARY) GTEST_SKIP();
auto text_file = "dump_gz_text_tri_run0.melt";
auto compressed_file = "dump_gz_compressed_tri_run0.melt.gz";
enable_triclinic();
generate_text_and_compressed_dump(text_file, compressed_file, "atom/gz", "", 0);
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}
TEST_F(DumpAtomGZTest, compressed_triclinic_with_units_run0)
{
if (!GZIP_BINARY) GTEST_SKIP();
auto text_file = "dump_gz_text_tri_with_units_run0.melt";
auto compressed_file = "dump_gz_compressed_tri_with_units_run0.melt.gz";
enable_triclinic();
generate_text_and_compressed_dump(text_file, compressed_file, "atom/gz", "scale no units yes",
0);
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}
TEST_F(DumpAtomGZTest, compressed_triclinic_with_time_run0)
{
if (!GZIP_BINARY) GTEST_SKIP();
auto text_file = "dump_gz_text_tri_with_time_run0.melt";
auto compressed_file = "dump_gz_compressed_tri_with_time_run0.melt.gz";
enable_triclinic();
generate_text_and_compressed_dump(text_file, compressed_file, "atom/gz", "scale no time yes",
0);
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}
TEST_F(DumpAtomGZTest, compressed_triclinic_with_image_run0)
{
if (!GZIP_BINARY) GTEST_SKIP();
auto text_file = "dump_gz_text_tri_with_image_run0.melt";
auto compressed_file = "dump_gz_compressed_tri_with_image_run0.melt.gz";
enable_triclinic();
generate_text_and_compressed_dump(text_file, compressed_file, "atom/gz", "image yes", 0);
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}
int main(int argc, char **argv)
{
MPI_Init(&argc, &argv);
::testing::InitGoogleMock(&argc, argv);
// handle arguments passed via environment variable
if (const char *var = getenv("TEST_ARGS")) {
std::vector<std::string> env = utils::split_words(var);
for (auto arg : env) {
if (arg == "-v") {
verbose = true;
}
}
}
GZIP_BINARY = getenv("GZIP_BINARY");
if ((argc > 1) && (strcmp(argv[1], "-v") == 0)) verbose = true;
int rv = RUN_ALL_TESTS();
MPI_Finalize();
return rv;
}

284
unittest/formats/test_dump_atom_zstd.cpp
View File

@ -1,284 +0,0 @@
/* ----------------------------------------------------------------------
LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
https://lammps.sandia.gov/, Sandia National Laboratories
Steve Plimpton, sjplimp@sandia.gov
Copyright (2003) Sandia Corporation. Under the terms of Contract
DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
certain rights in this software. This software is distributed under
the GNU General Public License.
See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */
#include "../testing/core.h"
#include "../testing/systems/melt.h"
#include "../testing/utils.h"
#include "fmt/format.h"
#include "utils.h"
#include "gmock/gmock.h"
#include "gtest/gtest.h"
#include <string>
char *ZSTD_BINARY = nullptr;
using ::testing::Eq;
class DumpAtomZSTDTest : public MeltTest {
std::string dump_style = "atom";
public:
void enable_triclinic()
{
if (!verbose) ::testing::internal::CaptureStdout();
command("change_box all triclinic");
if (!verbose) ::testing::internal::GetCapturedStdout();
}
void generate_dump(std::string dump_file, std::string dump_modify_options, int ntimesteps)
{
if (!verbose) ::testing::internal::CaptureStdout();
command(fmt::format("dump id all {} 1 {}", dump_style, dump_file));
if (!dump_modify_options.empty()) {
command(fmt::format("dump_modify id {}", dump_modify_options));
}
command(fmt::format("run {}", ntimesteps));
if (!verbose) ::testing::internal::GetCapturedStdout();
}
void generate_text_and_compressed_dump(std::string text_file, std::string compressed_file,
std::string compression_style,
std::string dump_modify_options, int ntimesteps)
{
if (!verbose) ::testing::internal::CaptureStdout();
command(fmt::format("dump id0 all {} 1 {}", dump_style, text_file));
command(fmt::format("dump id1 all {} 1 {}", compression_style, compressed_file));
if (!dump_modify_options.empty()) {
command(fmt::format("dump_modify id0 {}", dump_modify_options));
command(fmt::format("dump_modify id1 {}", dump_modify_options));
}
command(fmt::format("run {}", ntimesteps));
if (!verbose) ::testing::internal::GetCapturedStdout();
}
std::string convert_compressed_to_text(std::string compressed_file)
{
if (!verbose) ::testing::internal::CaptureStdout();
std::string converted_file = compressed_file.substr(0, compressed_file.find_last_of('.'));
std::string cmdline =
fmt::format("{} -d -c {} > {}", ZSTD_BINARY, compressed_file, converted_file);
system(cmdline.c_str());
if (!verbose) ::testing::internal::GetCapturedStdout();
return converted_file;
}
};
//-------------------------------------------------------------------------------------------------
// ZSTD compressed files
//-------------------------------------------------------------------------------------------------
TEST_F(DumpAtomZSTDTest, compressed_run0)
{
if (!ZSTD_BINARY) GTEST_SKIP();
auto text_file = "dump_zstd_text_run0.melt";
auto compressed_file = "dump_zstd_compressed_run0.melt.zst";
generate_text_and_compressed_dump(text_file, compressed_file, "atom/zstd", "", 0);
// make sure file is closed
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_THAT(converted_file, Eq("dump_zstd_compressed_run0.melt"));
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}
TEST_F(DumpAtomZSTDTest, compressed_with_units_run0)
{
if (!ZSTD_BINARY) GTEST_SKIP();
auto text_file = "dump_zstd_text_with_units_run0.melt";
auto compressed_file = "dump_zstd_compressed_with_units_run0.melt.zst";
generate_text_and_compressed_dump(text_file, compressed_file, "atom/zstd", "scale no units yes",
0);
// make sure file is closed
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}
TEST_F(DumpAtomZSTDTest, compressed_with_time_run0)
{
if (!ZSTD_BINARY) GTEST_SKIP();
auto text_file = "dump_zstd_text_with_time_run0.melt";
auto compressed_file = "dump_zstd_compressed_with_time_run0.melt.zst";
generate_text_and_compressed_dump(text_file, compressed_file, "atom/zstd", "scale no time yes",
0);
// make sure file is closed
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}
TEST_F(DumpAtomZSTDTest, compressed_triclinic_run0)
{
if (!ZSTD_BINARY) GTEST_SKIP();
auto text_file = "dump_zstd_text_tri_run0.melt";
auto compressed_file = "dump_zstd_compressed_tri_run0.melt.zst";
enable_triclinic();
generate_text_and_compressed_dump(text_file, compressed_file, "atom/zstd", "", 0);
// make sure file is closed
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}
TEST_F(DumpAtomZSTDTest, compressed_triclinic_with_units_run0)
{
if (!ZSTD_BINARY) GTEST_SKIP();
auto text_file = "dump_zstd_text_tri_with_units_run0.melt";
auto compressed_file = "dump_zstd_compressed_tri_with_units_run0.melt.zst";
enable_triclinic();
generate_text_and_compressed_dump(text_file, compressed_file, "atom/zstd", "scale no units yes",
0);
// make sure file is closed
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}
TEST_F(DumpAtomZSTDTest, compressed_triclinic_with_time_run0)
{
if (!ZSTD_BINARY) GTEST_SKIP();
auto text_file = "dump_zstd_text_tri_with_time_run0.melt";
auto compressed_file = "dump_zstd_compressed_tri_with_time_run0.melt.zst";
enable_triclinic();
generate_text_and_compressed_dump(text_file, compressed_file, "atom/zstd", "scale no time yes",
0);
// make sure file is closed
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}
TEST_F(DumpAtomZSTDTest, compressed_triclinic_with_image_run0)
{
if (!ZSTD_BINARY) GTEST_SKIP();
auto text_file = "dump_zstd_text_tri_with_image_run0.melt";
auto compressed_file = "dump_zstd_compressed_tri_with_image_run0.melt.zst";
enable_triclinic();
generate_text_and_compressed_dump(text_file, compressed_file, "atom/zstd", "image yes", 0);
// make sure file is closed
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}
int main(int argc, char **argv)
{
MPI_Init(&argc, &argv);
::testing::InitGoogleMock(&argc, argv);
// handle arguments passed via environment variable
if (const char *var = getenv("TEST_ARGS")) {
std::vector<std::string> env = utils::split_words(var);
for (auto arg : env) {
if (arg == "-v") {
verbose = true;
}
}
}
ZSTD_BINARY = getenv("ZSTD_BINARY");
if ((argc > 1) && (strcmp(argv[1], "-v") == 0)) verbose = true;
int rv = RUN_ALL_TESTS();
MPI_Finalize();
return rv;
}

2
unittest/formats/test_dump_cfg.cpp
View File

@ -21,6 +21,8 @@
using ::testing::Eq; using ::testing::Eq;
bool verbose = false;
class DumpCfgTest : public MeltTest { class DumpCfgTest : public MeltTest {
std::string dump_style = "cfg"; std::string dump_style = "cfg";

283
unittest/formats/test_dump_cfg_compressed.cpp Normal file
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@ -0,0 +1,283 @@
/* ----------------------------------------------------------------------
LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
https://lammps.sandia.gov/, Sandia National Laboratories
Steve Plimpton, sjplimp@sandia.gov
Copyright (2003) Sandia Corporation. Under the terms of Contract
DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
certain rights in this software. This software is distributed under
the GNU General Public License.
See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */
#include "../testing/utils.h"
#include "compressed_dump_test.h"
#include "fmt/format.h"
#include "utils.h"
#include "gmock/gmock.h"
#include "gtest/gtest.h"
#include <string>
using ::testing::Eq;
class DumpCfgCompressTest : public CompressedDumpTest {
public:
DumpCfgCompressTest() : CompressedDumpTest("cfg") {
}
};
//-------------------------------------------------------------------------------------------------
// compressed files
//-------------------------------------------------------------------------------------------------
TEST_F(DumpCfgCompressTest, compressed_run0)
{
if (!COMPRESS_BINARY) GTEST_SKIP();
auto base_name = "run*.melt.cfg";
auto text_files = text_dump_filename(base_name);
auto compressed_files = compressed_dump_filename(base_name);
auto base_name_0 = "run0.melt.cfg";
auto text_file_0 = text_dump_filename(base_name_0);
auto compressed_file_0 = compressed_dump_filename(base_name_0);
auto fields = "mass type xs ys zs id proc procp1 x y z ix iy iz vx vy vz fx fy fz";
if(compression_style == "cfg/zstd") {
generate_text_and_compressed_dump(text_files, compressed_files, fields, fields, "", "checksum yes", 0);
} else {
generate_text_and_compressed_dump(text_files, compressed_files, fields, "", 0);
}
TearDown();
ASSERT_FILE_EXISTS(text_file_0);
ASSERT_FILE_EXISTS(compressed_file_0);
auto converted_file_0 = convert_compressed_to_text(compressed_file_0);
ASSERT_FILE_EXISTS(converted_file_0);
ASSERT_FILE_EQUAL(text_file_0, converted_file_0);
delete_file(text_file_0);
delete_file(compressed_file_0);
delete_file(converted_file_0);
}
TEST_F(DumpCfgCompressTest, compressed_unwrap_run0)
{
if (!COMPRESS_BINARY) GTEST_SKIP();
auto base_name = "unwrap_run*.melt.cfg";
auto text_files = text_dump_filename(base_name);
auto compressed_files = compressed_dump_filename(base_name);
auto base_name_0 = "unwrap_run0.melt.cfg";
auto text_file_0 = text_dump_filename(base_name_0);
auto compressed_file_0 = compressed_dump_filename(base_name_0);
auto fields = "mass type xsu ysu zsu id proc procp1 x y z ix iy iz vx vy vz fx fy fz";
generate_text_and_compressed_dump(text_files, compressed_files, fields, "", 0);
TearDown();
ASSERT_FILE_EXISTS(text_file_0);
ASSERT_FILE_EXISTS(compressed_file_0);
auto converted_file_0 = convert_compressed_to_text(compressed_file_0);
ASSERT_FILE_EXISTS(converted_file_0);
ASSERT_FILE_EQUAL(text_file_0, converted_file_0);
delete_file(text_file_0);
delete_file(compressed_file_0);
delete_file(converted_file_0);
}
TEST_F(DumpCfgCompressTest, compressed_multi_file_run1)
{
if (!COMPRESS_BINARY) GTEST_SKIP();
auto base_name = "multi_file_run1_*.melt.cfg";
auto base_name_0 = "multi_file_run1_0.melt.cfg";
auto base_name_1 = "multi_file_run1_1.melt.cfg";
auto text_file = text_dump_filename(base_name);
auto text_file_0 = text_dump_filename(base_name_0);
auto text_file_1 = text_dump_filename(base_name_1);
auto compressed_file = compressed_dump_filename(base_name);
auto compressed_file_0 = compressed_dump_filename(base_name_0);
auto compressed_file_1 = compressed_dump_filename(base_name_1);
auto fields = "mass type xs ys zs id proc procp1 x y z ix iy iz vx vy vz fx fy fz";
if(compression_style == "cfg/zstd") {
generate_text_and_compressed_dump(text_file, compressed_file, fields, fields, "", "checksum no", 1);
} else {
generate_text_and_compressed_dump(text_file, compressed_file, fields, "", 1);
}
TearDown();
auto converted_file_0 = convert_compressed_to_text(compressed_file_0);
auto converted_file_1 = convert_compressed_to_text(compressed_file_1);
ASSERT_THAT(converted_file_0, Eq(converted_dump_filename(base_name_0)));
ASSERT_THAT(converted_file_1, Eq(converted_dump_filename(base_name_1)));
ASSERT_FILE_EXISTS(converted_file_0);
ASSERT_FILE_EXISTS(converted_file_1);
ASSERT_FILE_EQUAL(text_file_0, converted_file_0);
ASSERT_FILE_EQUAL(text_file_1, converted_file_1);
delete_file(text_file_0);
delete_file(text_file_1);
delete_file(compressed_file_0);
delete_file(compressed_file_1);
delete_file(converted_file_0);
delete_file(converted_file_1);
}
TEST_F(DumpCfgCompressTest, compressed_multi_file_with_pad_run1)
{
if (!COMPRESS_BINARY) GTEST_SKIP();
auto base_name = "multi_file_pad_run1_*.melt.cfg";
auto base_name_0 = "multi_file_pad_run1_000.melt.cfg";
auto base_name_1 = "multi_file_pad_run1_001.melt.cfg";
auto text_file = text_dump_filename(base_name);
auto text_file_0 = text_dump_filename(base_name_0);
auto text_file_1 = text_dump_filename(base_name_1);
auto compressed_file = compressed_dump_filename(base_name);
auto compressed_file_0 = compressed_dump_filename(base_name_0);
auto compressed_file_1 = compressed_dump_filename(base_name_1);
auto fields = "mass type xs ys zs id proc procp1 x y z ix iy iz vx vy vz fx fy fz";
generate_text_and_compressed_dump(text_file, compressed_file, fields, "pad 3", 1);
TearDown();
ASSERT_FILE_EXISTS(text_file_0);
ASSERT_FILE_EXISTS(text_file_1);
ASSERT_FILE_EXISTS(compressed_file_0);
ASSERT_FILE_EXISTS(compressed_file_1);
auto converted_file_0 = convert_compressed_to_text(compressed_file_0);
auto converted_file_1 = convert_compressed_to_text(compressed_file_1);
ASSERT_THAT(converted_file_0, Eq(converted_dump_filename(base_name_0)));
ASSERT_THAT(converted_file_1, Eq(converted_dump_filename(base_name_1)));
ASSERT_FILE_EXISTS(converted_file_0);
ASSERT_FILE_EXISTS(converted_file_1);
ASSERT_FILE_EQUAL(text_file_0, converted_file_0);
ASSERT_FILE_EQUAL(text_file_1, converted_file_1);
delete_file(text_file_0);
delete_file(text_file_1);
delete_file(compressed_file_0);
delete_file(compressed_file_1);
delete_file(converted_file_0);
delete_file(converted_file_1);
}
TEST_F(DumpCfgCompressTest, compressed_multi_file_with_maxfiles_run1)
{
if (!COMPRESS_BINARY) GTEST_SKIP();
auto base_name = "multi_file_maxfiles_run1_*.melt.cfg";
auto base_name_0 = "multi_file_maxfiles_run1_0.melt.cfg";
auto base_name_1 = "multi_file_maxfiles_run1_1.melt.cfg";
auto base_name_2 = "multi_file_maxfiles_run1_2.melt.cfg";
auto text_file = text_dump_filename(base_name);
auto text_file_0 = text_dump_filename(base_name_0);
auto text_file_1 = text_dump_filename(base_name_1);
auto text_file_2 = text_dump_filename(base_name_2);
auto compressed_file = compressed_dump_filename(base_name);
auto compressed_file_0 = compressed_dump_filename(base_name_0);
auto compressed_file_1 = compressed_dump_filename(base_name_1);
auto compressed_file_2 = compressed_dump_filename(base_name_2);
auto fields = "mass type xs ys zs id proc procp1 x y z ix iy iz vx vy vz fx fy fz";
generate_text_and_compressed_dump(text_file, compressed_file, fields, "maxfiles 2", 2);
TearDown();
ASSERT_FILE_NOT_EXISTS(text_file_0);
ASSERT_FILE_EXISTS(text_file_1);
ASSERT_FILE_EXISTS(text_file_2);
ASSERT_FILE_NOT_EXISTS(compressed_file_0);
ASSERT_FILE_EXISTS(compressed_file_1);
ASSERT_FILE_EXISTS(compressed_file_2);
auto converted_file_1 = convert_compressed_to_text(compressed_file_1);
auto converted_file_2 = convert_compressed_to_text(compressed_file_2);
ASSERT_THAT(converted_file_1, Eq(converted_dump_filename(base_name_1)));
ASSERT_THAT(converted_file_2, Eq(converted_dump_filename(base_name_2)));
ASSERT_FILE_EXISTS(converted_file_1);
ASSERT_FILE_EXISTS(converted_file_2);
ASSERT_FILE_EQUAL(text_file_1, converted_file_1);
ASSERT_FILE_EQUAL(text_file_2, converted_file_2);
delete_file(text_file_1);
delete_file(text_file_2);
delete_file(compressed_file_1);
delete_file(compressed_file_2);
delete_file(converted_file_1);
delete_file(converted_file_2);
}
TEST_F(DumpCfgCompressTest, compressed_modify_bad_param)
{
if (compression_style != "cfg/gz") GTEST_SKIP();
auto fields = "mass type xs ys zs id proc procp1 x y z ix iy iz vx vy vz fx fy fz";
if (!verbose) ::testing::internal::CaptureStdout();
command(fmt::format("dump id1 all {} 1 {} {}", compression_style, compressed_dump_filename("modify_bad_param_run0_*.melt.cfg"), fields));
if (!verbose) ::testing::internal::GetCapturedStdout();
TEST_FAILURE(".*ERROR: Illegal dump_modify command: compression level must in the range of.*",
command("dump_modify id1 compression_level 12");
);
}
TEST_F(DumpCfgCompressTest, compressed_modify_multi_bad_param)
{
if (compression_style != "cfg/gz") GTEST_SKIP();
auto fields = "mass type xs ys zs id proc procp1 x y z ix iy iz vx vy vz fx fy fz";
if (!verbose) ::testing::internal::CaptureStdout();
command(fmt::format("dump id1 all {} 1 {} {}", compression_style, compressed_dump_filename("modify_multi_bad_param_run0_*.melt.cfg"), fields));
if (!verbose) ::testing::internal::GetCapturedStdout();
TEST_FAILURE(".*ERROR: Illegal dump_modify command: compression level must in the range of.*",
command("dump_modify id1 pad 3 compression_level 12");
);
}
TEST_F(DumpCfgCompressTest, compressed_modify_clevel_run0)
{
if (!COMPRESS_BINARY) GTEST_SKIP();
auto base_name = "modify_clevel_run*.melt.cfg";
auto base_name_0 = "modify_clevel_run0.melt.cfg";
auto text_file = text_dump_filename(base_name);
auto compressed_file = compressed_dump_filename(base_name);
auto text_file_0 = text_dump_filename(base_name_0);
auto compressed_file_0 = compressed_dump_filename(base_name_0);
auto fields = "mass type xs ys zs id proc procp1 x y z ix iy iz vx vy vz fx fy fz";
generate_text_and_compressed_dump(text_file, compressed_file, fields, fields, "", "compression_level 3", 0);
TearDown();
ASSERT_FILE_EXISTS(text_file_0);
ASSERT_FILE_EXISTS(compressed_file_0);
auto converted_file_0 = convert_compressed_to_text(compressed_file);
ASSERT_THAT(converted_file_0, Eq(converted_dump_filename(base_name)));
ASSERT_FILE_EXISTS(converted_file_0);
ASSERT_FILE_EQUAL(text_file_0, converted_file_0);
delete_file(text_file_0);
delete_file(compressed_file_0);
delete_file(converted_file_0);
}

133
unittest/formats/test_dump_cfg_gz.cpp
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@ -1,133 +0,0 @@
/* ----------------------------------------------------------------------
LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
https://lammps.sandia.gov/, Sandia National Laboratories
Steve Plimpton, sjplimp@sandia.gov
Copyright (2003) Sandia Corporation. Under the terms of Contract
DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
certain rights in this software. This software is distributed under
the GNU General Public License.
See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */
#include "../testing/core.h"
#include "../testing/systems/melt.h"
#include "../testing/utils.h"
#include "fmt/format.h"
#include "utils.h"
#include "gmock/gmock.h"
#include "gtest/gtest.h"
char *GZIP_BINARY = nullptr;
using ::testing::Eq;
class DumpCfgGZTest : public MeltTest {
std::string dump_style = "cfg";
public:
void generate_text_and_compressed_dump(std::string text_file, std::string compressed_file,
std::string compression_style, std::string fields,
std::string dump_modify_options, int ntimesteps)
{
if (!verbose) ::testing::internal::CaptureStdout();
command(fmt::format("dump id0 all {} 1 {} {}", dump_style, text_file, fields));
command(fmt::format("dump id1 all {} 1 {} {}", compression_style, compressed_file, fields));
if (!dump_modify_options.empty()) {
command(fmt::format("dump_modify id0 {}", dump_modify_options));
command(fmt::format("dump_modify id1 {}", dump_modify_options));
}
command(fmt::format("run {}", ntimesteps));
if (!verbose) ::testing::internal::GetCapturedStdout();
}
std::string convert_compressed_to_text(std::string compressed_file)
{
if (!verbose) ::testing::internal::CaptureStdout();
std::string converted_file = compressed_file.substr(0, compressed_file.find_last_of('.'));
std::string cmdline =
fmt::format("{} -d -c {} > {}", GZIP_BINARY, compressed_file, converted_file);
system(cmdline.c_str());
if (!verbose) ::testing::internal::GetCapturedStdout();
return converted_file;
}
};
TEST_F(DumpCfgGZTest, compressed_run0)
{
if (!GZIP_BINARY) GTEST_SKIP();
auto text_files = "dump_cfg_gz_text_run*.melt.cfg";
auto compressed_files = "dump_cfg_gz_compressed_run*.melt.cfg.gz";
auto text_file = "dump_cfg_gz_text_run0.melt.cfg";
auto compressed_file = "dump_cfg_gz_compressed_run0.melt.cfg.gz";
auto fields = "mass type xs ys zs id proc procp1 x y z ix iy iz vx vy vz fx fy fz";
generate_text_and_compressed_dump(text_files, compressed_files, "cfg/gz", fields, "", 0);
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}
TEST_F(DumpCfgGZTest, compressed_unwrap_run0)
{
if (!GZIP_BINARY) GTEST_SKIP();
auto text_files = "dump_cfg_unwrap_gz_text_run*.melt.cfg";
auto compressed_files = "dump_cfg_unwrap_gz_compressed_run*.melt.cfg.gz";
auto text_file = "dump_cfg_unwrap_gz_text_run0.melt.cfg";
auto compressed_file = "dump_cfg_unwrap_gz_compressed_run0.melt.cfg.gz";
auto fields = "mass type xsu ysu zsu id proc procp1 x y z ix iy iz vx vy vz fx fy fz";
generate_text_and_compressed_dump(text_files, compressed_files, "cfg/gz", fields, "", 0);
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}
int main(int argc, char **argv)
{
MPI_Init(&argc, &argv);
::testing::InitGoogleMock(&argc, argv);
// handle arguments passed via environment variable
if (const char *var = getenv("TEST_ARGS")) {
std::vector<std::string> env = utils::split_words(var);
for (auto arg : env) {
if (arg == "-v") {
verbose = true;
}
}
}
GZIP_BINARY = getenv("GZIP_BINARY");
if ((argc > 1) && (strcmp(argv[1], "-v") == 0)) verbose = true;
int rv = RUN_ALL_TESTS();
MPI_Finalize();
return rv;
}

133
unittest/formats/test_dump_cfg_zstd.cpp
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@ -1,133 +0,0 @@
/* ----------------------------------------------------------------------
LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
https://lammps.sandia.gov/, Sandia National Laboratories
Steve Plimpton, sjplimp@sandia.gov
Copyright (2003) Sandia Corporation. Under the terms of Contract
DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
certain rights in this software. This software is distributed under
the GNU General Public License.
See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */
#include "../testing/core.h"
#include "../testing/systems/melt.h"
#include "../testing/utils.h"
#include "fmt/format.h"
#include "utils.h"
#include "gmock/gmock.h"
#include "gtest/gtest.h"
char *ZSTD_BINARY = nullptr;
using ::testing::Eq;
class DumpCfgZstdTest : public MeltTest {
std::string dump_style = "cfg";
public:
void generate_text_and_compressed_dump(std::string text_file, std::string compressed_file,
std::string compression_style, std::string fields,
std::string dump_modify_options, int ntimesteps)
{
if (!verbose) ::testing::internal::CaptureStdout();
command(fmt::format("dump id0 all {} 1 {} {}", dump_style, text_file, fields));
command(fmt::format("dump id1 all {} 1 {} {}", compression_style, compressed_file, fields));
if (!dump_modify_options.empty()) {
command(fmt::format("dump_modify id0 {}", dump_modify_options));
command(fmt::format("dump_modify id1 {}", dump_modify_options));
}
command(fmt::format("run {}", ntimesteps));
if (!verbose) ::testing::internal::GetCapturedStdout();
}
std::string convert_compressed_to_text(std::string compressed_file)
{
if (!verbose) ::testing::internal::CaptureStdout();
std::string converted_file = compressed_file.substr(0, compressed_file.find_last_of('.'));
std::string cmdline =
fmt::format("{} -d -c {} > {}", ZSTD_BINARY, compressed_file, converted_file);
system(cmdline.c_str());
if (!verbose) ::testing::internal::GetCapturedStdout();
return converted_file;
}
};
TEST_F(DumpCfgZstdTest, compressed_run0)
{
if (!ZSTD_BINARY) GTEST_SKIP();
auto text_files = "dump_cfg_zstd_text_run*.melt.cfg";
auto compressed_files = "dump_cfg_zstd_compressed_run*.melt.cfg.zst";
auto text_file = "dump_cfg_zstd_text_run0.melt.cfg";
auto compressed_file = "dump_cfg_zstd_compressed_run0.melt.cfg.zst";
auto fields = "mass type xs ys zs id proc procp1 x y z ix iy iz vx vy vz fx fy fz";
generate_text_and_compressed_dump(text_files, compressed_files, "cfg/zstd", fields, "", 0);
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}
TEST_F(DumpCfgZstdTest, compressed_unwrap_run0)
{
if (!ZSTD_BINARY) GTEST_SKIP();
auto text_files = "dump_cfg_unwrap_zstd_text_run*.melt.cfg";
auto compressed_files = "dump_cfg_unwrap_zstd_compressed_run*.melt.cfg.zst";
auto text_file = "dump_cfg_unwrap_zstd_text_run0.melt.cfg";
auto compressed_file = "dump_cfg_unwrap_zstd_compressed_run0.melt.cfg.zst";
auto fields = "mass type xsu ysu zsu id proc procp1 x y z ix iy iz vx vy vz fx fy fz";
generate_text_and_compressed_dump(text_files, compressed_files, "cfg/zstd", fields, "", 0);
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}
int main(int argc, char **argv)
{
MPI_Init(&argc, &argv);
::testing::InitGoogleMock(&argc, argv);
// handle arguments passed via environment variable
if (const char *var = getenv("TEST_ARGS")) {
std::vector<std::string> env = utils::split_words(var);
for (auto arg : env) {
if (arg == "-v") {
verbose = true;
}
}
}
ZSTD_BINARY = getenv("ZSTD_BINARY");
if ((argc > 1) && (strcmp(argv[1], "-v") == 0)) verbose = true;
int rv = RUN_ALL_TESTS();
MPI_Finalize();
return rv;
}

1
unittest/formats/test_dump_custom.cpp
View File

@ -22,6 +22,7 @@
using ::testing::Eq; using ::testing::Eq;
char *BINARY2TXT_BINARY = nullptr; char *BINARY2TXT_BINARY = nullptr;
bool verbose = false;
class DumpCustomTest : public MeltTest { class DumpCustomTest : public MeltTest {
std::string dump_style = "custom"; std::string dump_style = "custom";

266
unittest/formats/test_dump_custom_compressed.cpp Normal file
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@ -0,0 +1,266 @@
/* ----------------------------------------------------------------------
LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
https://lammps.sandia.gov/, Sandia National Laboratories
Steve Plimpton, sjplimp@sandia.gov
Copyright (2003) Sandia Corporation. Under the terms of Contract
DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
certain rights in this software. This software is distributed under
the GNU General Public License.
See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */
#include "../testing/utils.h"
#include "compressed_dump_test.h"
#include "fmt/format.h"
#include "utils.h"
#include "gmock/gmock.h"
#include "gtest/gtest.h"
#include <string>
using ::testing::Eq;
class DumpCustomCompressTest : public CompressedDumpTest {
public:
DumpCustomCompressTest() : CompressedDumpTest("custom") {
}
};
TEST_F(DumpCustomCompressTest, compressed_run1)
{
if (!COMPRESS_BINARY) GTEST_SKIP();
auto base_name = "custom_run1.melt";
auto text_file = text_dump_filename(base_name);
auto compressed_file = compressed_dump_filename(base_name);
auto fields = "id type proc x y z ix iy iz xs ys zs xu yu zu xsu ysu zsu vx vy vz fx fy fz";
if(compression_style == "custom/zstd") {
generate_text_and_compressed_dump(text_file, compressed_file, fields, fields, "units yes", "units yes checksum yes", 1);
} else {
generate_text_and_compressed_dump(text_file, compressed_file, fields, "units yes", 1);
}
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}
TEST_F(DumpCustomCompressTest, compressed_triclinic_run1)
{
if (!COMPRESS_BINARY) GTEST_SKIP();
auto base_name = "custom_tri_run1.melt";
auto text_file = text_dump_filename(base_name);
auto compressed_file = compressed_dump_filename(base_name);
auto fields = "id type proc x y z xs ys zs xsu ysu zsu vx vy vz fx fy fz";
enable_triclinic();
generate_text_and_compressed_dump(text_file, compressed_file, fields, "units yes", 1);
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}
TEST_F(DumpCustomCompressTest, compressed_multi_file_run1)
{
if (!COMPRESS_BINARY) GTEST_SKIP();
auto base_name = "multi_file_run1_*.melt.custom";
auto base_name_0 = "multi_file_run1_0.melt.custom";
auto base_name_1 = "multi_file_run1_1.melt.custom";
auto text_file = text_dump_filename(base_name);
auto text_file_0 = text_dump_filename(base_name_0);
auto text_file_1 = text_dump_filename(base_name_1);
auto compressed_file = compressed_dump_filename(base_name);
auto compressed_file_0 = compressed_dump_filename(base_name_0);
auto compressed_file_1 = compressed_dump_filename(base_name_1);
auto fields = "id type proc x y z ix iy iz xs ys zs xu yu zu xsu ysu zsu vx vy vz fx fy fz";
if(compression_style == "custom/zstd") {
generate_text_and_compressed_dump(text_file, compressed_file, fields, fields, "", "checksum no", 1);
} else {
generate_text_and_compressed_dump(text_file, compressed_file, fields, "", 1);
}
TearDown();
auto converted_file_0 = convert_compressed_to_text(compressed_file_0);
auto converted_file_1 = convert_compressed_to_text(compressed_file_1);
ASSERT_THAT(converted_file_0, Eq(converted_dump_filename(base_name_0)));
ASSERT_THAT(converted_file_1, Eq(converted_dump_filename(base_name_1)));
ASSERT_FILE_EXISTS(converted_file_0);
ASSERT_FILE_EXISTS(converted_file_1);
ASSERT_FILE_EQUAL(text_file_0, converted_file_0);
ASSERT_FILE_EQUAL(text_file_1, converted_file_1);
delete_file(text_file_0);
delete_file(text_file_1);
delete_file(compressed_file_0);
delete_file(compressed_file_1);
delete_file(converted_file_0);
delete_file(converted_file_1);
}
TEST_F(DumpCustomCompressTest, compressed_multi_file_with_pad_run1)
{
if (!COMPRESS_BINARY) GTEST_SKIP();
auto base_name = "multi_file_pad_run1_*.melt.custom";
auto base_name_0 = "multi_file_pad_run1_000.melt.custom";
auto base_name_1 = "multi_file_pad_run1_001.melt.custom";
auto text_file = text_dump_filename(base_name);
auto text_file_0 = text_dump_filename(base_name_0);
auto text_file_1 = text_dump_filename(base_name_1);
auto compressed_file = compressed_dump_filename(base_name);
auto compressed_file_0 = compressed_dump_filename(base_name_0);
auto compressed_file_1 = compressed_dump_filename(base_name_1);
auto fields = "id type proc x y z ix iy iz xs ys zs xu yu zu xsu ysu zsu vx vy vz fx fy fz";
generate_text_and_compressed_dump(text_file, compressed_file, fields, "pad 3", 1);
TearDown();
ASSERT_FILE_EXISTS(text_file_0);
ASSERT_FILE_EXISTS(text_file_1);
ASSERT_FILE_EXISTS(compressed_file_0);
ASSERT_FILE_EXISTS(compressed_file_1);
auto converted_file_0 = convert_compressed_to_text(compressed_file_0);
auto converted_file_1 = convert_compressed_to_text(compressed_file_1);
ASSERT_THAT(converted_file_0, Eq(converted_dump_filename(base_name_0)));
ASSERT_THAT(converted_file_1, Eq(converted_dump_filename(base_name_1)));
ASSERT_FILE_EXISTS(converted_file_0);
ASSERT_FILE_EXISTS(converted_file_1);
ASSERT_FILE_EQUAL(text_file_0, converted_file_0);
ASSERT_FILE_EQUAL(text_file_1, converted_file_1);
delete_file(text_file_0);
delete_file(text_file_1);
delete_file(compressed_file_0);
delete_file(compressed_file_1);
delete_file(converted_file_0);
delete_file(converted_file_1);
}
TEST_F(DumpCustomCompressTest, compressed_multi_file_with_maxfiles_run1)
{
if (!COMPRESS_BINARY) GTEST_SKIP();
auto base_name = "multi_file_maxfiles_run1_*.melt.custom";
auto base_name_0 = "multi_file_maxfiles_run1_0.melt.custom";
auto base_name_1 = "multi_file_maxfiles_run1_1.melt.custom";
auto base_name_2 = "multi_file_maxfiles_run1_2.melt.custom";
auto text_file = text_dump_filename(base_name);
auto text_file_0 = text_dump_filename(base_name_0);
auto text_file_1 = text_dump_filename(base_name_1);
auto text_file_2 = text_dump_filename(base_name_2);
auto compressed_file = compressed_dump_filename(base_name);
auto compressed_file_0 = compressed_dump_filename(base_name_0);
auto compressed_file_1 = compressed_dump_filename(base_name_1);
auto compressed_file_2 = compressed_dump_filename(base_name_2);
auto fields = "id type proc x y z ix iy iz xs ys zs xu yu zu xsu ysu zsu vx vy vz fx fy fz";
generate_text_and_compressed_dump(text_file, compressed_file, fields, "maxfiles 2", 2);
TearDown();
ASSERT_FILE_NOT_EXISTS(text_file_0);
ASSERT_FILE_EXISTS(text_file_1);
ASSERT_FILE_EXISTS(text_file_2);
ASSERT_FILE_NOT_EXISTS(compressed_file_0);
ASSERT_FILE_EXISTS(compressed_file_1);
ASSERT_FILE_EXISTS(compressed_file_2);
auto converted_file_1 = convert_compressed_to_text(compressed_file_1);
auto converted_file_2 = convert_compressed_to_text(compressed_file_2);
ASSERT_THAT(converted_file_1, Eq(converted_dump_filename(base_name_1)));
ASSERT_THAT(converted_file_2, Eq(converted_dump_filename(base_name_2)));
ASSERT_FILE_EXISTS(converted_file_1);
ASSERT_FILE_EXISTS(converted_file_2);
ASSERT_FILE_EQUAL(text_file_1, converted_file_1);
ASSERT_FILE_EQUAL(text_file_2, converted_file_2);
delete_file(text_file_1);
delete_file(text_file_2);
delete_file(compressed_file_1);
delete_file(compressed_file_2);
delete_file(converted_file_1);
delete_file(converted_file_2);
}
TEST_F(DumpCustomCompressTest, compressed_modify_bad_param)
{
if (compression_style != "custom/gz") GTEST_SKIP();
auto fields = "id type proc x y z ix iy iz xs ys zs xu yu zu xsu ysu zsu vx vy vz fx fy fz";
command(fmt::format("dump id1 all {} 1 {} {}", compression_style, compressed_dump_filename("modify_bad_param_run0_*.melt.custom"), fields));
TEST_FAILURE(".*ERROR: Illegal dump_modify command: compression level must in the range of.*",
command("dump_modify id1 compression_level 12");
);
}
TEST_F(DumpCustomCompressTest, compressed_modify_multi_bad_param)
{
if (compression_style != "custom/gz") GTEST_SKIP();
auto fields = "id type proc x y z ix iy iz xs ys zs xu yu zu xsu ysu zsu vx vy vz fx fy fz";
command(fmt::format("dump id1 all {} 1 {} {}", compression_style, compressed_dump_filename("modify_multi_bad_param_run0_*.melt.custom"), fields));
TEST_FAILURE(".*ERROR: Illegal dump_modify command: compression level must in the range of.*",
command("dump_modify id1 pad 3 compression_level 12");
);
}
TEST_F(DumpCustomCompressTest, compressed_modify_clevel_run0)
{
if (!COMPRESS_BINARY) GTEST_SKIP();
auto base_name = "modify_clevel_run0.melt.custom";
auto text_file = text_dump_filename(base_name);
auto compressed_file = compressed_dump_filename(base_name);
auto fields = "id type proc x y z ix iy iz xs ys zs xu yu zu xsu ysu zsu vx vy vz fx fy fz";
generate_text_and_compressed_dump(text_file, compressed_file, fields, fields, "", "compression_level 3", 0);
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_THAT(converted_file, Eq(converted_dump_filename(base_name)));
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}

154
unittest/formats/test_dump_custom_gz.cpp
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@ -1,154 +0,0 @@
/* ----------------------------------------------------------------------
LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
https://lammps.sandia.gov/, Sandia National Laboratories
Steve Plimpton, sjplimp@sandia.gov
Copyright (2003) Sandia Corporation. Under the terms of Contract
DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
certain rights in this software. This software is distributed under
the GNU General Public License.
See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */
#include "../testing/core.h"
#include "../testing/systems/melt.h"
#include "../testing/utils.h"
#include "fmt/format.h"
#include "utils.h"
#include "gmock/gmock.h"
#include "gtest/gtest.h"
using ::testing::Eq;
char *GZIP_BINARY = nullptr;
class DumpCustomGZTest : public MeltTest {
std::string dump_style = "custom";
public:
void enable_triclinic()
{
if (!verbose) ::testing::internal::CaptureStdout();
command("change_box all triclinic");
if (!verbose) ::testing::internal::GetCapturedStdout();
}
void generate_dump(std::string dump_file, std::string fields, std::string dump_modify_options,
int ntimesteps)
{
if (!verbose) ::testing::internal::CaptureStdout();
command(fmt::format("dump id all {} 1 {} {}", dump_style, dump_file, fields));
if (!dump_modify_options.empty()) {
command(fmt::format("dump_modify id {}", dump_modify_options));
}
command(fmt::format("run {}", ntimesteps));
if (!verbose) ::testing::internal::GetCapturedStdout();
}
void generate_text_and_compressed_dump(std::string text_file, std::string compressed_file,
std::string compression_style, std::string fields,
std::string dump_modify_options, int ntimesteps)
{
if (!verbose) ::testing::internal::CaptureStdout();
command(fmt::format("dump id0 all {} 1 {} {}", dump_style, text_file, fields));
command(fmt::format("dump id1 all {} 1 {} {}", compression_style, compressed_file, fields));
if (!dump_modify_options.empty()) {
command(fmt::format("dump_modify id0 {}", dump_modify_options));
command(fmt::format("dump_modify id1 {}", dump_modify_options));
}
command(fmt::format("run {}", ntimesteps));
if (!verbose) ::testing::internal::GetCapturedStdout();
}
std::string convert_compressed_to_text(std::string compressed_file)
{
if (!verbose) ::testing::internal::CaptureStdout();
std::string converted_file = compressed_file.substr(0, compressed_file.find_last_of('.'));
std::string cmdline =
fmt::format("{} -d -c {} > {}", GZIP_BINARY, compressed_file, converted_file);
system(cmdline.c_str());
if (!verbose) ::testing::internal::GetCapturedStdout();
return converted_file;
}
};
TEST_F(DumpCustomGZTest, compressed_run1)
{
if (!GZIP_BINARY) GTEST_SKIP();
auto text_file = "dump_custom_gz_text_run1.melt";
auto compressed_file = "dump_custom_gz_compressed_run1.melt.gz";
auto fields = "id type proc x y z ix iy iz xs ys zs xu yu zu xsu ysu zsu vx vy vz fx fy fz";
generate_text_and_compressed_dump(text_file, compressed_file, "custom/gz", fields, "units yes",
1);
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}
TEST_F(DumpCustomGZTest, compressed_triclinic_run1)
{
if (!GZIP_BINARY) GTEST_SKIP();
auto text_file = "dump_custom_gz_tri_text_run1.melt";
auto compressed_file = "dump_custom_gz_tri_compressed_run1.melt.gz";
auto fields = "id type proc x y z xs ys zs xsu ysu zsu vx vy vz fx fy fz";
enable_triclinic();
generate_text_and_compressed_dump(text_file, compressed_file, "custom/gz", fields, "units yes",
1);
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}
int main(int argc, char **argv)
{
MPI_Init(&argc, &argv);
::testing::InitGoogleMock(&argc, argv);
// handle arguments passed via environment variable
if (const char *var = getenv("TEST_ARGS")) {
std::vector<std::string> env = utils::split_words(var);
for (auto arg : env) {
if (arg == "-v") {
verbose = true;
}
}
}
GZIP_BINARY = getenv("GZIP_BINARY");
if ((argc > 1) && (strcmp(argv[1], "-v") == 0)) verbose = true;
int rv = RUN_ALL_TESTS();
MPI_Finalize();
return rv;
}

154
unittest/formats/test_dump_custom_zstd.cpp
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@ -1,154 +0,0 @@
/* ----------------------------------------------------------------------
LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
https://lammps.sandia.gov/, Sandia National Laboratories
Steve Plimpton, sjplimp@sandia.gov
Copyright (2003) Sandia Corporation. Under the terms of Contract
DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
certain rights in this software. This software is distributed under
the GNU General Public License.
See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */
#include "../testing/core.h"
#include "../testing/systems/melt.h"
#include "../testing/utils.h"
#include "fmt/format.h"
#include "utils.h"
#include "gmock/gmock.h"
#include "gtest/gtest.h"
using ::testing::Eq;
char *ZSTD_BINARY = nullptr;
class DumpCustomZstdTest : public MeltTest {
std::string dump_style = "custom";
public:
void enable_triclinic()
{
if (!verbose) ::testing::internal::CaptureStdout();
command("change_box all triclinic");
if (!verbose) ::testing::internal::GetCapturedStdout();
}
void generate_dump(std::string dump_file, std::string fields, std::string dump_modify_options,
int ntimesteps)
{
if (!verbose) ::testing::internal::CaptureStdout();
command(fmt::format("dump id all {} 1 {} {}", dump_style, dump_file, fields));
if (!dump_modify_options.empty()) {
command(fmt::format("dump_modify id {}", dump_modify_options));
}
command(fmt::format("run {}", ntimesteps));
if (!verbose) ::testing::internal::GetCapturedStdout();
}
void generate_text_and_compressed_dump(std::string text_file, std::string compressed_file,
std::string compression_style, std::string fields,
std::string dump_modify_options, int ntimesteps)
{
if (!verbose) ::testing::internal::CaptureStdout();
command(fmt::format("dump id0 all {} 1 {} {}", dump_style, text_file, fields));
command(fmt::format("dump id1 all {} 1 {} {}", compression_style, compressed_file, fields));
if (!dump_modify_options.empty()) {
command(fmt::format("dump_modify id0 {}", dump_modify_options));
command(fmt::format("dump_modify id1 {}", dump_modify_options));
}
command(fmt::format("run {}", ntimesteps));
if (!verbose) ::testing::internal::GetCapturedStdout();
}
std::string convert_compressed_to_text(std::string compressed_file)
{
if (!verbose) ::testing::internal::CaptureStdout();
std::string converted_file = compressed_file.substr(0, compressed_file.find_last_of('.'));
std::string cmdline =
fmt::format("{} -d -c {} > {}", ZSTD_BINARY, compressed_file, converted_file);
system(cmdline.c_str());
if (!verbose) ::testing::internal::GetCapturedStdout();
return converted_file;
}
};
TEST_F(DumpCustomZstdTest, compressed_run1)
{
if (!ZSTD_BINARY) GTEST_SKIP();
auto text_file = "dump_custom_zstd_text_run1.melt";
auto compressed_file = "dump_custom_zstd_compressed_run1.melt.zst";
auto fields = "id type proc x y z ix iy iz xs ys zs xu yu zu xsu ysu zsu vx vy vz fx fy fz";
generate_text_and_compressed_dump(text_file, compressed_file, "custom/zstd", fields,
"units yes", 1);
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}
TEST_F(DumpCustomZstdTest, compressed_triclinic_run1)
{
if (!ZSTD_BINARY) GTEST_SKIP();
auto text_file = "dump_custom_zstd_tri_text_run1.melt";
auto compressed_file = "dump_custom_zstd_tri_compressed_run1.melt.zst";
auto fields = "id type proc x y z xs ys zs xsu ysu zsu vx vy vz fx fy fz";
enable_triclinic();
generate_text_and_compressed_dump(text_file, compressed_file, "custom/zstd", fields,
"units yes", 1);
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}
int main(int argc, char **argv)
{
MPI_Init(&argc, &argv);
::testing::InitGoogleMock(&argc, argv);
// handle arguments passed via environment variable
if (const char *var = getenv("TEST_ARGS")) {
std::vector<std::string> env = utils::split_words(var);
for (auto arg : env) {
if (arg == "-v") {
verbose = true;
}
}
}
ZSTD_BINARY = getenv("ZSTD_BINARY");
if ((argc > 1) && (strcmp(argv[1], "-v") == 0)) verbose = true;
int rv = RUN_ALL_TESTS();
MPI_Finalize();
return rv;
}

256
unittest/formats/test_dump_local_compressed.cpp Normal file
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@ -0,0 +1,256 @@
/* ----------------------------------------------------------------------
LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
https://lammps.sandia.gov/, Sandia National Laboratories
Steve Plimpton, sjplimp@sandia.gov
Copyright (2003) Sandia Corporation. Under the terms of Contract
DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
certain rights in this software. This software is distributed under
the GNU General Public License.
See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */
#include "../testing/utils.h"
#include "compressed_dump_test.h"
#include "fmt/format.h"
#include "utils.h"
#include "gmock/gmock.h"
#include "gtest/gtest.h"
#include <string>
using ::testing::Eq;
class DumpLocalCompressTest : public CompressedDumpTest {
public:
DumpLocalCompressTest() : CompressedDumpTest("local") {
}
void SetUp() override {
CompressedDumpTest::SetUp();
if (!verbose) ::testing::internal::CaptureStdout();
command("compute comp all pair/local dist eng");
if (!verbose) ::testing::internal::GetCapturedStdout();
}
};
TEST_F(DumpLocalCompressTest, compressed_run0)
{
if (!COMPRESS_BINARY) GTEST_SKIP();
auto base_name = "run*.melt.local";
auto base_name_0 = "run0.melt.local";
auto text_files = text_dump_filename(base_name);
auto compressed_files = compressed_dump_filename(base_name);
auto text_file_0 = text_dump_filename(base_name_0);
auto compressed_file_0 = compressed_dump_filename(base_name_0);
auto fields = "index c_comp[1]";
if(compression_style == "local/zstd") {
generate_text_and_compressed_dump(text_files, compressed_files, fields, fields, "", "checksum yes", 0);
} else {
generate_text_and_compressed_dump(text_files, compressed_files, fields, "", 0);
}
TearDown();
ASSERT_FILE_EXISTS(text_file_0);
ASSERT_FILE_EXISTS(compressed_file_0);
auto converted_file_0 = convert_compressed_to_text(compressed_file_0);
ASSERT_FILE_EXISTS(converted_file_0);
ASSERT_FILE_EQUAL(text_file_0, converted_file_0);
delete_file(text_file_0);
delete_file(compressed_file_0);
delete_file(converted_file_0);
}
TEST_F(DumpLocalCompressTest, compressed_multi_file_run1)
{
if (!COMPRESS_BINARY) GTEST_SKIP();
auto base_name = "multi_file_run1_*.melt.local";
auto base_name_0 = "multi_file_run1_0.melt.local";
auto base_name_1 = "multi_file_run1_1.melt.local";
auto text_file = text_dump_filename(base_name);
auto text_file_0 = text_dump_filename(base_name_0);
auto text_file_1 = text_dump_filename(base_name_1);
auto compressed_file = compressed_dump_filename(base_name);
auto compressed_file_0 = compressed_dump_filename(base_name_0);
auto compressed_file_1 = compressed_dump_filename(base_name_1);
auto fields = "index c_comp[1]";
if(compression_style == "local/zstd") {
generate_text_and_compressed_dump(text_file, compressed_file, fields, fields, "", "checksum no", 1);
} else {
generate_text_and_compressed_dump(text_file, compressed_file, fields, "", 1);
}
TearDown();
auto converted_file_0 = convert_compressed_to_text(compressed_file_0);
auto converted_file_1 = convert_compressed_to_text(compressed_file_1);
ASSERT_THAT(converted_file_0, Eq(converted_dump_filename(base_name_0)));
ASSERT_THAT(converted_file_1, Eq(converted_dump_filename(base_name_1)));
ASSERT_FILE_EXISTS(converted_file_0);
ASSERT_FILE_EXISTS(converted_file_1);
ASSERT_FILE_EQUAL(text_file_0, converted_file_0);
ASSERT_FILE_EQUAL(text_file_1, converted_file_1);
delete_file(text_file_0);
delete_file(text_file_1);
delete_file(compressed_file_0);
delete_file(compressed_file_1);
delete_file(converted_file_0);
delete_file(converted_file_1);
}
TEST_F(DumpLocalCompressTest, compressed_multi_file_with_pad_run1)
{
if (!COMPRESS_BINARY) GTEST_SKIP();
auto base_name = "multi_file_pad_run1_*.melt.local";
auto base_name_0 = "multi_file_pad_run1_000.melt.local";
auto base_name_1 = "multi_file_pad_run1_001.melt.local";
auto text_file = text_dump_filename(base_name);
auto text_file_0 = text_dump_filename(base_name_0);
auto text_file_1 = text_dump_filename(base_name_1);
auto compressed_file = compressed_dump_filename(base_name);
auto compressed_file_0 = compressed_dump_filename(base_name_0);
auto compressed_file_1 = compressed_dump_filename(base_name_1);
auto fields = "index c_comp[1]";
generate_text_and_compressed_dump(text_file, compressed_file, fields, "pad 3", 1);
TearDown();
ASSERT_FILE_EXISTS(text_file_0);
ASSERT_FILE_EXISTS(text_file_1);
ASSERT_FILE_EXISTS(compressed_file_0);
ASSERT_FILE_EXISTS(compressed_file_1);
auto converted_file_0 = convert_compressed_to_text(compressed_file_0);
auto converted_file_1 = convert_compressed_to_text(compressed_file_1);
ASSERT_THAT(converted_file_0, Eq(converted_dump_filename(base_name_0)));
ASSERT_THAT(converted_file_1, Eq(converted_dump_filename(base_name_1)));
ASSERT_FILE_EXISTS(converted_file_0);
ASSERT_FILE_EXISTS(converted_file_1);
ASSERT_FILE_EQUAL(text_file_0, converted_file_0);
ASSERT_FILE_EQUAL(text_file_1, converted_file_1);
delete_file(text_file_0);
delete_file(text_file_1);
delete_file(compressed_file_0);
delete_file(compressed_file_1);
delete_file(converted_file_0);
delete_file(converted_file_1);
}
TEST_F(DumpLocalCompressTest, compressed_multi_file_with_maxfiles_run1)
{
if (!COMPRESS_BINARY) GTEST_SKIP();
auto base_name = "multi_file_maxfiles_run1_*.melt.local";
auto base_name_0 = "multi_file_maxfiles_run1_0.melt.local";
auto base_name_1 = "multi_file_maxfiles_run1_1.melt.local";
auto base_name_2 = "multi_file_maxfiles_run1_2.melt.local";
auto text_file = text_dump_filename(base_name);
auto text_file_0 = text_dump_filename(base_name_0);
auto text_file_1 = text_dump_filename(base_name_1);
auto text_file_2 = text_dump_filename(base_name_2);
auto compressed_file = compressed_dump_filename(base_name);
auto compressed_file_0 = compressed_dump_filename(base_name_0);
auto compressed_file_1 = compressed_dump_filename(base_name_1);
auto compressed_file_2 = compressed_dump_filename(base_name_2);
auto fields = "index c_comp[1]";
generate_text_and_compressed_dump(text_file, compressed_file, fields, "maxfiles 2", 2);
TearDown();
ASSERT_FILE_NOT_EXISTS(text_file_0);
ASSERT_FILE_EXISTS(text_file_1);
ASSERT_FILE_EXISTS(text_file_2);
ASSERT_FILE_NOT_EXISTS(compressed_file_0);
ASSERT_FILE_EXISTS(compressed_file_1);
ASSERT_FILE_EXISTS(compressed_file_2);
auto converted_file_1 = convert_compressed_to_text(compressed_file_1);
auto converted_file_2 = convert_compressed_to_text(compressed_file_2);
ASSERT_THAT(converted_file_1, Eq(converted_dump_filename(base_name_1)));
ASSERT_THAT(converted_file_2, Eq(converted_dump_filename(base_name_2)));
ASSERT_FILE_EXISTS(converted_file_1);
ASSERT_FILE_EXISTS(converted_file_2);
ASSERT_FILE_EQUAL(text_file_1, converted_file_1);
ASSERT_FILE_EQUAL(text_file_2, converted_file_2);
delete_file(text_file_1);
delete_file(text_file_2);
delete_file(compressed_file_1);
delete_file(compressed_file_2);
delete_file(converted_file_1);
delete_file(converted_file_2);
}
TEST_F(DumpLocalCompressTest, compressed_modify_bad_param)
{
if (compression_style != "local/gz") GTEST_SKIP();
auto fields = "index c_comp[1]";
if (!verbose) ::testing::internal::CaptureStdout();
command(fmt::format("dump id1 all {} 1 {} {}", compression_style, compressed_dump_filename("modify_bad_param_run0_*.melt.local"), fields));
if (!verbose) ::testing::internal::GetCapturedStdout();
TEST_FAILURE(".*ERROR: Illegal dump_modify command: compression level must in the range of.*",
command("dump_modify id1 compression_level 12");
);
}
TEST_F(DumpLocalCompressTest, compressed_modify_multi_bad_param)
{
if (compression_style != "local/gz") GTEST_SKIP();
auto fields = "index c_comp[1]";
if (!verbose) ::testing::internal::CaptureStdout();
command(fmt::format("dump id1 all {} 1 {} {}", compression_style, compressed_dump_filename("modify_multi_bad_param_run0_*.melt.local"), fields));
if (!verbose) ::testing::internal::GetCapturedStdout();
TEST_FAILURE(".*ERROR: Illegal dump_modify command: compression level must in the range of.*",
command("dump_modify id1 pad 3 compression_level 12");
);
}
TEST_F(DumpLocalCompressTest, compressed_modify_clevel_run0)
{
if (!COMPRESS_BINARY) GTEST_SKIP();
auto base_name = "modify_clevel_run0.melt.local";
auto text_file = text_dump_filename(base_name);
auto compressed_file = compressed_dump_filename(base_name);
auto fields = "index c_comp[1]";
generate_text_and_compressed_dump(text_file, compressed_file, fields, fields, "", "compression_level 3", 0);
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_THAT(converted_file, Eq(converted_dump_filename(base_name)));
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}

111
unittest/formats/test_dump_local_gz.cpp
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@ -1,111 +0,0 @@
/* ----------------------------------------------------------------------
LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
https://lammps.sandia.gov/, Sandia National Laboratories
Steve Plimpton, sjplimp@sandia.gov
Copyright (2003) Sandia Corporation. Under the terms of Contract
DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
certain rights in this software. This software is distributed under
the GNU General Public License.
See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */
#include "../testing/core.h"
#include "../testing/systems/melt.h"
#include "../testing/utils.h"
#include "fmt/format.h"
#include "utils.h"
#include "gmock/gmock.h"
#include "gtest/gtest.h"
char *GZIP_BINARY = nullptr;
using ::testing::Eq;
class DumpLocalGZTest : public MeltTest {
std::string dump_style = "local";
public:
void generate_text_and_compressed_dump(std::string text_file, std::string compressed_file,
std::string compression_style, std::string fields,
std::string dump_modify_options, int ntimesteps)
{
if (!verbose) ::testing::internal::CaptureStdout();
command(fmt::format("dump id0 all {} 1 {} {}", dump_style, text_file, fields));
command(fmt::format("dump id1 all {} 1 {} {}", compression_style, compressed_file, fields));
if (!dump_modify_options.empty()) {
command(fmt::format("dump_modify id0 {}", dump_modify_options));
command(fmt::format("dump_modify id1 {}", dump_modify_options));
}
command(fmt::format("run {}", ntimesteps));
if (!verbose) ::testing::internal::GetCapturedStdout();
}
std::string convert_compressed_to_text(std::string compressed_file)
{
if (!verbose) ::testing::internal::CaptureStdout();
std::string converted_file = compressed_file.substr(0, compressed_file.find_last_of('.'));
std::string cmdline =
fmt::format("{} -d -c {} > {}", GZIP_BINARY, compressed_file, converted_file);
system(cmdline.c_str());
if (!verbose) ::testing::internal::GetCapturedStdout();
return converted_file;
}
};
TEST_F(DumpLocalGZTest, compressed_run0)
{
if (!GZIP_BINARY) GTEST_SKIP();
if (!verbose) ::testing::internal::CaptureStdout();
command("compute comp all pair/local dist eng");
if (!verbose) ::testing::internal::GetCapturedStdout();
auto text_files = "dump_local_gz_text_run*.melt.local";
auto compressed_files = "dump_local_gz_compressed_run*.melt.local.gz";
auto text_file = "dump_local_gz_text_run0.melt.local";
auto compressed_file = "dump_local_gz_compressed_run0.melt.local.gz";
auto fields = "index c_comp[1]";
generate_text_and_compressed_dump(text_files, compressed_files, "local/gz", fields, "", 0);
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}
int main(int argc, char **argv)
{
MPI_Init(&argc, &argv);
::testing::InitGoogleMock(&argc, argv);
// handle arguments passed via environment variable
if (const char *var = getenv("TEST_ARGS")) {
std::vector<std::string> env = utils::split_words(var);
for (auto arg : env) {
if (arg == "-v") {
verbose = true;
}
}
}
GZIP_BINARY = getenv("GZIP_BINARY");
if ((argc > 1) && (strcmp(argv[1], "-v") == 0)) verbose = true;
int rv = RUN_ALL_TESTS();
MPI_Finalize();
return rv;
}

111
unittest/formats/test_dump_local_zstd.cpp
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@ -1,111 +0,0 @@
/* ----------------------------------------------------------------------
LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
https://lammps.sandia.gov/, Sandia National Laboratories
Steve Plimpton, sjplimp@sandia.gov
Copyright (2003) Sandia Corporation. Under the terms of Contract
DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
certain rights in this software. This software is distributed under
the GNU General Public License.
See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */
#include "../testing/core.h"
#include "../testing/systems/melt.h"
#include "../testing/utils.h"
#include "fmt/format.h"
#include "utils.h"
#include "gmock/gmock.h"
#include "gtest/gtest.h"
char *ZSTD_BINARY = nullptr;
using ::testing::Eq;
class DumpLocalGZTest : public MeltTest {
std::string dump_style = "local";
public:
void generate_text_and_compressed_dump(std::string text_file, std::string compressed_file,
std::string compression_style, std::string fields,
std::string dump_modify_options, int ntimesteps)
{
if (!verbose) ::testing::internal::CaptureStdout();
command(fmt::format("dump id0 all {} 1 {} {}", dump_style, text_file, fields));
command(fmt::format("dump id1 all {} 1 {} {}", compression_style, compressed_file, fields));
if (!dump_modify_options.empty()) {
command(fmt::format("dump_modify id0 {}", dump_modify_options));
command(fmt::format("dump_modify id1 {}", dump_modify_options));
}
command(fmt::format("run {}", ntimesteps));
if (!verbose) ::testing::internal::GetCapturedStdout();
}
std::string convert_compressed_to_text(std::string compressed_file)
{
if (!verbose) ::testing::internal::CaptureStdout();
std::string converted_file = compressed_file.substr(0, compressed_file.find_last_of('.'));
std::string cmdline =
fmt::format("{} -d -c {} > {}", ZSTD_BINARY, compressed_file, converted_file);
system(cmdline.c_str());
if (!verbose) ::testing::internal::GetCapturedStdout();
return converted_file;
}
};
TEST_F(DumpLocalGZTest, compressed_run0)
{
if (!ZSTD_BINARY) GTEST_SKIP();
if (!verbose) ::testing::internal::CaptureStdout();
command("compute comp all pair/local dist eng");
if (!verbose) ::testing::internal::GetCapturedStdout();
auto text_files = "dump_local_zstd_text_run*.melt.local";
auto compressed_files = "dump_local_zstd_compressed_run*.melt.local.zst";
auto text_file = "dump_local_zstd_text_run0.melt.local";
auto compressed_file = "dump_local_zstd_compressed_run0.melt.local.zst";
auto fields = "index c_comp[1]";
generate_text_and_compressed_dump(text_files, compressed_files, "local/zstd", fields, "", 0);
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}
int main(int argc, char **argv)
{
MPI_Init(&argc, &argv);
::testing::InitGoogleMock(&argc, argv);
// handle arguments passed via environment variable
if (const char *var = getenv("TEST_ARGS")) {
std::vector<std::string> env = utils::split_words(var);
for (auto arg : env) {
if (arg == "-v") {
verbose = true;
}
}
}
ZSTD_BINARY = getenv("ZSTD_BINARY");
if ((argc > 1) && (strcmp(argv[1], "-v") == 0)) verbose = true;
int rv = RUN_ALL_TESTS();
MPI_Finalize();
return rv;
}

239
unittest/formats/test_dump_xyz_compressed.cpp Normal file
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@ -0,0 +1,239 @@
/* ----------------------------------------------------------------------
LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
https://lammps.sandia.gov/, Sandia National Laboratories
Steve Plimpton, sjplimp@sandia.gov
Copyright (2003) Sandia Corporation. Under the terms of Contract
DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
certain rights in this software. This software is distributed under
the GNU General Public License.
See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */
#include "../testing/utils.h"
#include "compressed_dump_test.h"
#include "fmt/format.h"
#include "utils.h"
#include "gmock/gmock.h"
#include "gtest/gtest.h"
#include <string>
using ::testing::Eq;
class DumpXYZCompressTest : public CompressedDumpTest {
public:
DumpXYZCompressTest() : CompressedDumpTest("xyz") {
}
};
TEST_F(DumpXYZCompressTest, compressed_run0)
{
if (!COMPRESS_BINARY) GTEST_SKIP();
auto base_name = "run*.melt.xyz";
auto base_name_0 = "run0.melt.xyz";
auto text_files = text_dump_filename(base_name);
auto compressed_files = compressed_dump_filename(base_name);
auto text_file_0 = text_dump_filename(base_name_0);
auto compressed_file_0 = compressed_dump_filename(base_name_0);
if(compression_style == "xyz/zstd") {
generate_text_and_compressed_dump(text_files, compressed_files, "", "", "", "checksum yes", 0);
} else {
generate_text_and_compressed_dump(text_files, compressed_files, "", "", 0);
}
TearDown();
ASSERT_FILE_EXISTS(text_file_0);
ASSERT_FILE_EXISTS(compressed_file_0);
auto converted_file_0 = convert_compressed_to_text(compressed_file_0);
ASSERT_FILE_EXISTS(converted_file_0);
ASSERT_FILE_EQUAL(text_file_0, converted_file_0);
delete_file(text_file_0);
delete_file(compressed_file_0);
delete_file(converted_file_0);
}
TEST_F(DumpXYZCompressTest, compressed_multi_file_run1)
{
if (!COMPRESS_BINARY) GTEST_SKIP();
auto base_name = "multi_file_run1_*.melt.xyz";
auto base_name_0 = "multi_file_run1_0.melt.xyz";
auto base_name_1 = "multi_file_run1_1.melt.xyz";
auto text_file = text_dump_filename(base_name);
auto text_file_0 = text_dump_filename(base_name_0);
auto text_file_1 = text_dump_filename(base_name_1);
auto compressed_file = compressed_dump_filename(base_name);
auto compressed_file_0 = compressed_dump_filename(base_name_0);
auto compressed_file_1 = compressed_dump_filename(base_name_1);
if(compression_style == "xyz/zstd") {
generate_text_and_compressed_dump(text_file, compressed_file, "", "", "", "checksum no", 1);
} else {
generate_text_and_compressed_dump(text_file, compressed_file, "", "", 1);
}
TearDown();
auto converted_file_0 = convert_compressed_to_text(compressed_file_0);
auto converted_file_1 = convert_compressed_to_text(compressed_file_1);
ASSERT_THAT(converted_file_0, Eq(converted_dump_filename(base_name_0)));
ASSERT_THAT(converted_file_1, Eq(converted_dump_filename(base_name_1)));
ASSERT_FILE_EXISTS(converted_file_0);
ASSERT_FILE_EXISTS(converted_file_1);
ASSERT_FILE_EQUAL(text_file_0, converted_file_0);
ASSERT_FILE_EQUAL(text_file_1, converted_file_1);
delete_file(text_file_0);
delete_file(text_file_1);
delete_file(compressed_file_0);
delete_file(compressed_file_1);
delete_file(converted_file_0);
delete_file(converted_file_1);
}
TEST_F(DumpXYZCompressTest, compressed_multi_file_with_pad_run1)
{
if (!COMPRESS_BINARY) GTEST_SKIP();
auto base_name = "multi_file_pad_run1_*.melt.xyz";
auto base_name_0 = "multi_file_pad_run1_000.melt.xyz";
auto base_name_1 = "multi_file_pad_run1_001.melt.xyz";
auto text_file = text_dump_filename(base_name);
auto text_file_0 = text_dump_filename(base_name_0);
auto text_file_1 = text_dump_filename(base_name_1);
auto compressed_file = compressed_dump_filename(base_name);
auto compressed_file_0 = compressed_dump_filename(base_name_0);
auto compressed_file_1 = compressed_dump_filename(base_name_1);
generate_text_and_compressed_dump(text_file, compressed_file, "", "pad 3", 1);
TearDown();
ASSERT_FILE_EXISTS(text_file_0);
ASSERT_FILE_EXISTS(text_file_1);
ASSERT_FILE_EXISTS(compressed_file_0);
ASSERT_FILE_EXISTS(compressed_file_1);
auto converted_file_0 = convert_compressed_to_text(compressed_file_0);
auto converted_file_1 = convert_compressed_to_text(compressed_file_1);
ASSERT_THAT(converted_file_0, Eq(converted_dump_filename(base_name_0)));
ASSERT_THAT(converted_file_1, Eq(converted_dump_filename(base_name_1)));
ASSERT_FILE_EXISTS(converted_file_0);
ASSERT_FILE_EXISTS(converted_file_1);
ASSERT_FILE_EQUAL(text_file_0, converted_file_0);
ASSERT_FILE_EQUAL(text_file_1, converted_file_1);
delete_file(text_file_0);
delete_file(text_file_1);
delete_file(compressed_file_0);
delete_file(compressed_file_1);
delete_file(converted_file_0);
delete_file(converted_file_1);
}
TEST_F(DumpXYZCompressTest, compressed_multi_file_with_maxfiles_run1)
{
if (!COMPRESS_BINARY) GTEST_SKIP();
auto base_name = "multi_file_maxfiles_run1_*.melt.xyz";
auto base_name_0 = "multi_file_maxfiles_run1_0.melt.xyz";
auto base_name_1 = "multi_file_maxfiles_run1_1.melt.xyz";
auto base_name_2 = "multi_file_maxfiles_run1_2.melt.xyz";
auto text_file = text_dump_filename(base_name);
auto text_file_0 = text_dump_filename(base_name_0);
auto text_file_1 = text_dump_filename(base_name_1);
auto text_file_2 = text_dump_filename(base_name_2);
auto compressed_file = compressed_dump_filename(base_name);
auto compressed_file_0 = compressed_dump_filename(base_name_0);
auto compressed_file_1 = compressed_dump_filename(base_name_1);
auto compressed_file_2 = compressed_dump_filename(base_name_2);
generate_text_and_compressed_dump(text_file, compressed_file, "", "maxfiles 2", 2);
TearDown();
ASSERT_FILE_NOT_EXISTS(text_file_0);
ASSERT_FILE_EXISTS(text_file_1);
ASSERT_FILE_EXISTS(text_file_2);
ASSERT_FILE_NOT_EXISTS(compressed_file_0);
ASSERT_FILE_EXISTS(compressed_file_1);
ASSERT_FILE_EXISTS(compressed_file_2);
auto converted_file_1 = convert_compressed_to_text(compressed_file_1);
auto converted_file_2 = convert_compressed_to_text(compressed_file_2);
ASSERT_THAT(converted_file_1, Eq(converted_dump_filename(base_name_1)));
ASSERT_THAT(converted_file_2, Eq(converted_dump_filename(base_name_2)));
ASSERT_FILE_EXISTS(converted_file_1);
ASSERT_FILE_EXISTS(converted_file_2);
ASSERT_FILE_EQUAL(text_file_1, converted_file_1);
ASSERT_FILE_EQUAL(text_file_2, converted_file_2);
delete_file(text_file_1);
delete_file(text_file_2);
delete_file(compressed_file_1);
delete_file(compressed_file_2);
delete_file(converted_file_1);
delete_file(converted_file_2);
}
TEST_F(DumpXYZCompressTest, compressed_modify_bad_param)
{
if (compression_style != "xyz/gz") GTEST_SKIP();
if (!verbose) ::testing::internal::CaptureStdout();
command(fmt::format("dump id1 all {} 1 {}", compression_style, compressed_dump_filename("modify_bad_param_run0_*.melt.xyz")));
if (!verbose) ::testing::internal::GetCapturedStdout();
TEST_FAILURE(".*ERROR: Illegal dump_modify command: compression level must in the range of.*",
command("dump_modify id1 compression_level 12");
);
}
TEST_F(DumpXYZCompressTest, compressed_modify_multi_bad_param)
{
if (compression_style != "xyz/gz") GTEST_SKIP();
if (!verbose) ::testing::internal::CaptureStdout();
command(fmt::format("dump id1 all {} 1 {}", compression_style, compressed_dump_filename("modify_multi_bad_param_run0_*.melt.xyz")));
if (!verbose) ::testing::internal::GetCapturedStdout();
TEST_FAILURE(".*ERROR: Illegal dump_modify command: compression level must in the range of.*",
command("dump_modify id1 pad 3 compression_level 12");
);
}
TEST_F(DumpXYZCompressTest, compressed_modify_clevel_run0)
{
if (!COMPRESS_BINARY) GTEST_SKIP();
auto base_name = "modify_clevel_run0.melt.xyz";
auto text_file = text_dump_filename(base_name);
auto compressed_file = compressed_dump_filename(base_name);
generate_text_and_compressed_dump(text_file, compressed_file, "", "", "", "compression_level 3", 0);
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_THAT(converted_file, Eq(converted_dump_filename(base_name)));
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}

106
unittest/formats/test_dump_xyz_gz.cpp
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@ -1,106 +0,0 @@
/* ----------------------------------------------------------------------
LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
https://lammps.sandia.gov/, Sandia National Laboratories
Steve Plimpton, sjplimp@sandia.gov
Copyright (2003) Sandia Corporation. Under the terms of Contract
DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
certain rights in this software. This software is distributed under
the GNU General Public License.
See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */
#include "../testing/core.h"
#include "../testing/systems/melt.h"
#include "../testing/utils.h"
#include "fmt/format.h"
#include "utils.h"
#include "gmock/gmock.h"
#include "gtest/gtest.h"
char *GZIP_BINARY = nullptr;
using ::testing::Eq;
class DumpXYZGZTest : public MeltTest {
std::string dump_style = "xyz";
public:
void generate_text_and_compressed_dump(std::string text_file, std::string compressed_file,
std::string compression_style,
std::string dump_modify_options, int ntimesteps)
{
if (!verbose) ::testing::internal::CaptureStdout();
command(fmt::format("dump id0 all {} 1 {}", dump_style, text_file));
command(fmt::format("dump id1 all {} 1 {}", compression_style, compressed_file));
if (!dump_modify_options.empty()) {
command(fmt::format("dump_modify id0 {}", dump_modify_options));
command(fmt::format("dump_modify id1 {}", dump_modify_options));
}
command(fmt::format("run {}", ntimesteps));
if (!verbose) ::testing::internal::GetCapturedStdout();
}
std::string convert_compressed_to_text(std::string compressed_file)
{
if (!verbose) ::testing::internal::CaptureStdout();
std::string converted_file = compressed_file.substr(0, compressed_file.find_last_of('.'));
std::string cmdline =
fmt::format("{} -d -c {} > {}", GZIP_BINARY, compressed_file, converted_file);
system(cmdline.c_str());
if (!verbose) ::testing::internal::GetCapturedStdout();
return converted_file;
}
};
TEST_F(DumpXYZGZTest, compressed_run0)
{
if (!GZIP_BINARY) GTEST_SKIP();
auto text_files = "dump_xyz_gz_text_run*.melt.xyz";
auto compressed_files = "dump_xyz_gz_compressed_run*.melt.xyz.gz";
auto text_file = "dump_xyz_gz_text_run0.melt.xyz";
auto compressed_file = "dump_xyz_gz_compressed_run0.melt.xyz.gz";
generate_text_and_compressed_dump(text_files, compressed_files, "xyz/gz", "", 0);
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}
int main(int argc, char **argv)
{
MPI_Init(&argc, &argv);
::testing::InitGoogleMock(&argc, argv);
// handle arguments passed via environment variable
if (const char *var = getenv("TEST_ARGS")) {
std::vector<std::string> env = utils::split_words(var);
for (auto arg : env) {
if (arg == "-v") {
verbose = true;
}
}
}
GZIP_BINARY = getenv("GZIP_BINARY");
if ((argc > 1) && (strcmp(argv[1], "-v") == 0)) verbose = true;
int rv = RUN_ALL_TESTS();
MPI_Finalize();
return rv;
}

106
unittest/formats/test_dump_xyz_zstd.cpp
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@ -1,106 +0,0 @@
/* ----------------------------------------------------------------------
LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
https://lammps.sandia.gov/, Sandia National Laboratories
Steve Plimpton, sjplimp@sandia.gov
Copyright (2003) Sandia Corporation. Under the terms of Contract
DE-AC04-94AL85000 with Sandia Corporation, the U.S. Government retains
certain rights in this software. This software is distributed under
the GNU General Public License.
See the README file in the top-level LAMMPS directory.
------------------------------------------------------------------------- */
#include "../testing/core.h"
#include "../testing/systems/melt.h"
#include "../testing/utils.h"
#include "fmt/format.h"
#include "utils.h"
#include "gmock/gmock.h"
#include "gtest/gtest.h"
char *ZSTD_BINARY = nullptr;
using ::testing::Eq;
class DumpXYZGZTest : public MeltTest {
std::string dump_style = "xyz";
public:
void generate_text_and_compressed_dump(std::string text_file, std::string compressed_file,
std::string compression_style,
std::string dump_modify_options, int ntimesteps)
{
if (!verbose) ::testing::internal::CaptureStdout();
command(fmt::format("dump id0 all {} 1 {}", dump_style, text_file));
command(fmt::format("dump id1 all {} 1 {}", compression_style, compressed_file));
if (!dump_modify_options.empty()) {
command(fmt::format("dump_modify id0 {}", dump_modify_options));
command(fmt::format("dump_modify id1 {}", dump_modify_options));
}
command(fmt::format("run {}", ntimesteps));
if (!verbose) ::testing::internal::GetCapturedStdout();
}
std::string convert_compressed_to_text(std::string compressed_file)
{
if (!verbose) ::testing::internal::CaptureStdout();
std::string converted_file = compressed_file.substr(0, compressed_file.find_last_of('.'));
std::string cmdline =
fmt::format("{} -d -c {} > {}", ZSTD_BINARY, compressed_file, converted_file);
system(cmdline.c_str());
if (!verbose) ::testing::internal::GetCapturedStdout();
return converted_file;
}
};
TEST_F(DumpXYZGZTest, compressed_run0)
{
if (!ZSTD_BINARY) GTEST_SKIP();
auto text_files = "dump_xyz_zstd_text_run*.melt.xyz";
auto compressed_files = "dump_xyz_zstd_compressed_run*.melt.xyz.zst";
auto text_file = "dump_xyz_zstd_text_run0.melt.xyz";
auto compressed_file = "dump_xyz_zstd_compressed_run0.melt.xyz.zst";
generate_text_and_compressed_dump(text_files, compressed_files, "xyz/zstd", "", 0);
TearDown();
ASSERT_FILE_EXISTS(text_file);
ASSERT_FILE_EXISTS(compressed_file);
auto converted_file = convert_compressed_to_text(compressed_file);
ASSERT_FILE_EXISTS(converted_file);
ASSERT_FILE_EQUAL(text_file, converted_file);
delete_file(text_file);
delete_file(compressed_file);
delete_file(converted_file);
}
int main(int argc, char **argv)
{
MPI_Init(&argc, &argv);
::testing::InitGoogleMock(&argc, argv);
// handle arguments passed via environment variable
if (const char *var = getenv("TEST_ARGS")) {
std::vector<std::string> env = utils::split_words(var);
for (auto arg : env) {
if (arg == "-v") {
verbose = true;
}
}
}
ZSTD_BINARY = getenv("ZSTD_BINARY");
if ((argc > 1) && (strcmp(argv[1], "-v") == 0)) verbose = true;
int rv = RUN_ALL_TESTS();
MPI_Finalize();
return rv;
}

2
unittest/testing/core.h
View File

@ -42,7 +42,7 @@ using ::testing::MatchesRegex;
} }
// whether to print verbose output (i.e. not capturing LAMMPS screen output). // whether to print verbose output (i.e. not capturing LAMMPS screen output).
bool verbose = false; extern bool verbose;
class LAMMPSTest : public ::testing::Test { class LAMMPSTest : public ::testing::Test {
public: public:

3
unittest/testing/utils.h
View File

@ -70,6 +70,9 @@ static bool file_exists(const std::string &filename)
} }
#define ASSERT_FILE_EXISTS(NAME) ASSERT_TRUE(file_exists(NAME)) #define ASSERT_FILE_EXISTS(NAME) ASSERT_TRUE(file_exists(NAME))
#define ASSERT_FILE_NOT_EXISTS(NAME) ASSERT_FALSE(file_exists(NAME))
#define ASSERT_FILE_EQUAL(FILE_A, FILE_B) ASSERT_TRUE(equal_lines(FILE_A, FILE_B)) #define ASSERT_FILE_EQUAL(FILE_A, FILE_B) ASSERT_TRUE(equal_lines(FILE_A, FILE_B))
#endif #endif