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clean up doc src

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This commit is contained in:
Steve Plimpton
2016-10-06 13:00:46 -06:00
parent 02bfa898ee
commit 493873fb93
458 changed files with 16897 additions and 11014 deletions
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20
examples/obstacle/log.15Feb16.obstacle.g++.1 → examples/obstacle/log.5Oct16.obstacle.g++.1
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@ -1,4 +1,4 @@
LAMMPS (15 Feb 2016)
LAMMPS (5 Oct 2016)
# 2d LJ obstacle flow
dimension 2
@ -80,7 +80,7 @@ fix 9 all enforce2d
timestep 0.003
thermo 1000
thermo_modify temp mobile
WARNING: Temperature for thermo pressure is not for group all (../thermo.cpp:445)
WARNING: Temperature for thermo pressure is not for group all (../thermo.cpp:474)
#dump 1 all atom 100 dump.obstacle
@ -126,20 +126,20 @@ Step Temp E_pair E_mol TotEng Press Volume
23000 1 -0.39249509 0 0.29411089 0.97187435 1459.6771
24000 1 -0.33410442 0 0.35250156 0.93960021 1463.5903
25000 1 -0.37437615 0 0.31222983 0.9644765 1464.9391
Loop time of 1.65987 on 1 procs for 25000 steps with 769 atoms
Loop time of 1.64517 on 1 procs for 25000 steps with 769 atoms
Performance: 3903929.372 tau/day, 15061.456 timesteps/s
Performance: 3938793.608 tau/day, 15195.963 timesteps/s
99.9% CPU use with 1 MPI tasks x no OpenMP threads
MPI task timing breakdown:
Section | min time | avg time | max time |%varavg| %total
---------------------------------------------------------------
Pair | 0.52106 | 0.52106 | 0.52106 | 0.0 | 31.39
Neigh | 0.16143 | 0.16143 | 0.16143 | 0.0 | 9.73
Comm | 0.023438 | 0.023438 | 0.023438 | 0.0 | 1.41
Output | 0.00032663 | 0.00032663 | 0.00032663 | 0.0 | 0.02
Modify | 0.87449 | 0.87449 | 0.87449 | 0.0 | 52.68
Other | | 0.07912 | | | 4.77
Pair | 0.5054 | 0.5054 | 0.5054 | 0.0 | 30.72
Neigh | 0.17887 | 0.17887 | 0.17887 | 0.0 | 10.87
Comm | 0.022527 | 0.022527 | 0.022527 | 0.0 | 1.37
Output | 0.00023794 | 0.00023794 | 0.00023794 | 0.0 | 0.01
Modify | 0.85127 | 0.85127 | 0.85127 | 0.0 | 51.74
Other | | 0.08687 | | | 5.28
Nlocal: 769 ave 769 max 769 min
Histogram: 1 0 0 0 0 0 0 0 0 0

22
examples/obstacle/log.15Feb16.obstacle.g++.4 → examples/obstacle/log.5Oct16.obstacle.g++.4
View File

@ -1,4 +1,4 @@
LAMMPS (15 Feb 2016)
LAMMPS (5 Oct 2016)
# 2d LJ obstacle flow
dimension 2
@ -80,7 +80,7 @@ fix 9 all enforce2d
timestep 0.003
thermo 1000
thermo_modify temp mobile
WARNING: Temperature for thermo pressure is not for group all (../thermo.cpp:445)
WARNING: Temperature for thermo pressure is not for group all (../thermo.cpp:474)
#dump 1 all atom 100 dump.obstacle
@ -126,20 +126,20 @@ Step Temp E_pair E_mol TotEng Press Volume
23000 1 -0.37327871 0 0.31332728 1.0623185 1453.1342
24000 1 -0.40040333 0 0.28620265 0.94983886 1459.4461
25000 1 -0.37645924 0 0.31014674 1.0526044 1458.7191
Loop time of 0.801717 on 4 procs for 25000 steps with 769 atoms
Loop time of 0.821326 on 4 procs for 25000 steps with 769 atoms
Performance: 8082654.578 tau/day, 31183.081 timesteps/s
99.2% CPU use with 4 MPI tasks x no OpenMP threads
Performance: 7889678.376 tau/day, 30438.574 timesteps/s
99.4% CPU use with 4 MPI tasks x no OpenMP threads
MPI task timing breakdown:
Section | min time | avg time | max time |%varavg| %total
---------------------------------------------------------------
Pair | 0.066442 | 0.13097 | 0.21239 | 16.1 | 16.34
Neigh | 0.03235 | 0.042894 | 0.056734 | 4.4 | 5.35
Comm | 0.14225 | 0.21218 | 0.28481 | 11.2 | 26.47
Output | 0.0005331 | 0.00056887 | 0.00064301 | 0.2 | 0.07
Modify | 0.27222 | 0.31224 | 0.33583 | 4.6 | 38.95
Other | | 0.1029 | | | 12.83
Pair | 0.064561 | 0.12703 | 0.20657 | 15.5 | 15.47
Neigh | 0.036315 | 0.04798 | 0.06249 | 4.4 | 5.84
Comm | 0.14793 | 0.21791 | 0.27951 | 10.6 | 26.53
Output | 0.00043583 | 0.00046438 | 0.00054574 | 0.2 | 0.06
Modify | 0.27754 | 0.31239 | 0.3371 | 3.9 | 38.03
Other | | 0.1156 | | | 14.07
Nlocal: 192.25 ave 243 max 151 min
Histogram: 1 1 0 0 0 0 1 0 0 1