fix gcmc updates from Aidan, trimming of output for replica commands
This commit is contained in:
Steve Plimpton
116
lib/voronoi/Install.py
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116
lib/voronoi/Install.py
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@ -0,0 +1,116 @@
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#!/usr/bin/env python
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# install.py tool to download, unpack, build, and link to the Voro++ library
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# used to automate the steps described in the README file in this dir
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import sys,os,re,urllib,commands
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# help message
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help = """
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Syntax: install.py -v version -g gdir [gname] -b bdir -l ldir
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specify one or more options, order does not matter
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gdir,bdir,ldir can be paths relative to lib/latte, full paths, or contain ~
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-v = version of Voro++ to download and build
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default = voro++-0.4.6 (current as of Jan 2015)
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-g = grab (download) from math.lbl.gov/voro++ website
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unpack tarfile in gdir to produce version dir (e.g. voro++-0.4.6)
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if optional gname specified, rename version dir to gname within gdir
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-b = build Voro++, bdir = Voro++ home directory
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note that bdir must include the version suffix unless renamed
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-l = create 2 softlinks (includelink,liblink)
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in lib/voronoi to src dir of ldir = Voro++ home directory
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note that ldir must include the version suffix unless renamed
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"""
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# settings
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version = "voro++-0.4.6"
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url = "http://math.lbl.gov/voro++/download/dir/%s.tar.gz" % version
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# print error message or help
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def error(str=None):
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if not str: print help
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else: print "ERROR",str
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sys.exit()
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# expand to full path name
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# process leading '~' or relative path
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def fullpath(path):
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return os.path.abspath(os.path.expanduser(path))
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# parse args
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args = sys.argv[1:]
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nargs = len(args)
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if nargs == 0: error()
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grabflag = 0
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buildflag = 0
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linkflag = 0
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iarg = 0
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while iarg < nargs:
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if args[iarg] == "-v":
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if iarg+2 > nargs: error()
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version = args[iarg+1]
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iarg += 2
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elif args[iarg] == "-g":
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if iarg+2 > nargs: error()
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grabflag = 1
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grabdir = args[iarg+1]
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grabname = None
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if iarg+2 < nargs and args[iarg+2][0] != '-':
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grabname = args[iarg+2]
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iarg += 1
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iarg += 2
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elif args[iarg] == "-b":
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if iarg+2 > nargs: error()
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buildflag = 1
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builddir = args[iarg+1]
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iarg += 2
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elif args[iarg] == "-l":
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if iarg+2 > nargs: error()
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linkflag = 1
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linkdir = args[iarg+1]
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iarg += 2
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else: error()
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# download and unpack Voro++ tarball
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if grabflag:
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print "Downloading Voro++ ..."
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grabdir = fullpath(grabdir)
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if not os.path.isdir(grabdir): error("Grab directory does not exist")
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urllib.urlretrieve(url,"%s/%s.tar.gz" % (grabdir,version))
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print "Unpacking Voro++ tarball ..."
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tardir = "%s/%s" % (grabdir,version)
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if os.path.exists(tardir): commands.getoutput("rm -rf %s" % tardir)
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cmd = "cd %s; tar zxvf %s.tar.gz" % (grabdir,version)
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txt = commands.getoutput(cmd)
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print tardir,grabdir,grabname
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if grabname: os.rename(tardir,"%s/%s" % (grabdir,grabname))
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# build Voro++
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if buildflag:
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print "Building Voro++ ..."
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cmd = "cd %s; make" % builddir
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txt = commands.getoutput(cmd)
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print txt
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# create 2 links in lib/voronoi to Voro++ src dir
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if linkflag:
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print "Creating links to Voro++ include and lib files"
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if os.path.isfile("includelink") or os.path.islink("includelink"):
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os.remove("includelink")
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if os.path.isfile("liblink") or os.path.islink("liblink"):
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os.remove("liblink")
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cmd = "ln -s %s/src includelink" % linkdir
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commands.getoutput(cmd)
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cmd = "ln -s %s/src liblink" % linkdir
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commands.getoutput(cmd)
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@ -9,8 +9,8 @@ Laboratory.
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-----------------
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You must perform the following steps yourself, or you can use the
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install.py Python script to automate any or all steps of the process.
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Type "python install.py" for instructions.
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Install.py Python script to automate any or all steps of the process.
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Type "python Install.py" for instructions.
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1. Download Voro++ at http://math.lbl.gov/voro++/download
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either as a tarball or via SVN, and unpack the
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@ -1,163 +0,0 @@
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#!usr/local/python
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# install.py tool to download, unpack, build, and link to the Voro++ library
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# used to automate the steps described in the README file in this dir
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import sys,os,re,urllib,commands
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help = """
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Syntax: install.py -d dir -v version -g -b -i installdir -l incdir libdir
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specify one or more options, order does not matter
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-d = dir to download tarball to, unpack tarball in, perform build in
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dir will be created if it doesn't exist (only last level)
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default = this dir
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-v = version of Voro++ to download and work with
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default = voro++-0.4.6 (current as of Jan 2015)
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-g = download (grab) tarball from
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http://math.lbl.gov/voro++/download/dir/version
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-b = build Voro++ by invoking "make" in its home dir
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no default
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-i = install Voro++ by invoking "make install" in its home dir
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installdir arg is optional:
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if not specified, installs at PREFIX defined in config.mk file
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if specified, will overwrite PREFIX and install there
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if PREFIX starts with /usr, will invoke "sudo make install"
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-l = create two links to incdir and libdir
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incdir and libdir are optional (specify neither or both):
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if specified, includelink and liblink are to those two dirs
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these are dirs where Voro++ include files and lib file are
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if not specified and no install, links are to Voro++ src dir
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if not specified and install performed,
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links are to include and lib dirs under PREFIX
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"""
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def error():
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print help
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sys.exit()
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# parse args
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args = sys.argv
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if len(args) == 1: error()
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dir = "."
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version = "voro++-0.4.6"
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grabflag = 0
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buildflag = 0
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installflag = 0
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linkflag = 0
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iarg = 1
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while iarg < len(args):
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if args[iarg] == "-d":
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if iarg+2 > len(args): error()
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dir = args[iarg+1]
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iarg += 2
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elif args[iarg] == "-v":
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if iarg+2 > len(args): error()
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version = args[iarg+1]
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iarg += 2
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elif args[iarg] == "-g":
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grabflag = 1
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iarg += 1
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elif args[iarg] == "-b":
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buildflag = 1
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iarg += 1
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elif args[iarg] == "-i":
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installflag = 1
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if iarg+1 == len(args) or args[iarg+1][0] == '-':
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installdir = ""
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iarg += 1
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else:
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if iarg+2 > len(args): error()
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installdir = args[iarg+1]
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iarg += 2
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elif args[iarg] == "-l":
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linkflag = 1
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if iarg+1 == len(args) or args[iarg+1][0] == '-' or \
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iarg+2 == len(args) or args[iarg+2][0] == '-':
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includedir = libdir = ""
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iarg += 1
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else:
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if iarg+3 > len(args): error()
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includedir = args[iarg+1]
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libdir = args[iarg+2]
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iarg += 3
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else: error()
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dir = os.path.abspath(dir)
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url = "http://math.lbl.gov/voro++/download/dir/%s.tar.gz" % version
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# create dir if does not exist
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if not os.path.isdir(dir):
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if os.path.isfile(dir):
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print "ERROR: Dir already exists as file"
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sys.exit()
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os.mkdir(dir)
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if not os.path.isdir(dir):
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print "ERROR: Unable to create dir"
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sys.exit()
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# download and unpack tarball
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if grabflag:
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print "Downloading Voro++ tarball ..."
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urllib.urlretrieve(url,"%s/%s.tar.gz" % (dir,version))
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print "Unpacking Voro++ tarball ..."
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cmd = "cd %s; tar zxvf %s.tar.gz" % (dir,version)
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txt = commands.getoutput(cmd)
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# build Voro++ in its dir
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if buildflag:
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print "Building Voro++ ..."
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cmd = "cd %s/%s; make" % (dir,version)
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txt = commands.getoutput(cmd)
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print txt
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# install Voro++
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# if installdir set, overwrite PREFIX var in its config.mk file
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# if PREFIX var starts with /usr, invoke sudo make install, else make install
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if installflag:
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print "Installing Voro++ ..."
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if installdir:
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txt = open("%s/%s/config.mk" % (dir,version),'r').read()
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txt = re.sub("PREFIX=.*?\n","PREFIX=%s\n" % installdir,txt)
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open("%s/%s/config.mk" % (dir,version),'w').write(txt)
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print "TXT:",txt
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txt = open("%s/%s/config.mk" % (dir,version),'r').read()
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var = re.findall("PREFIX=.*?\n",txt)
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prefix = var[0].split('=')[1].strip()
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if prefix.startswith("/usr"):
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cmd = "cd %s/%s; sudo make install" % (dir,version)
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else:
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cmd = "cd %s/%s; make install" % (dir,version)
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txt = commands.getoutput(cmd)
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print txt
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# create links in this dir to Voro++ include and lib files
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if linkflag:
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print "Creating links to Voro++ include and lib files"
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if os.path.isfile("includelink") or os.path.islink("includelink"):
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os.remove("includelink")
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if os.path.isfile("liblink") or os.path.islink("liblink"):
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os.remove("liblink")
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if includedir:
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cmd = "ln -s %s includelink" % includedir
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txt = commands.getoutput(cmd)
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cmd = "ln -s %s liblink" % linkdir
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txt = commands.getoutput(cmd)
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elif not installflag:
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cmd = "ln -s %s/%s/src includelink" % (dir,version)
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txt = commands.getoutput(cmd)
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cmd = "ln -s %s/%s/src liblink" % (dir,version)
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txt = commands.getoutput(cmd)
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else:
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cmd = "ln -s %s/include includelink" % prefix
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txt = commands.getoutput(cmd)
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cmd = "ln -s %s/lib liblink" % prefix
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txt = commands.getoutput(cmd)
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