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consolidate memory allocation information into a single function (in Info)

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This commit is contained in:
Axel Kohlmeyer
2020-09-15 01:48:38 -04:00
parent 0183e999c9
commit 4b64be77e0
4 changed files with 61 additions and 46 deletions
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5
doc/src/pg_lib_properties.rst
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@ -21,6 +21,11 @@ event as atoms are migrating between sub-domains.
-----------------------
.. doxygenfunction:: lammps_memory_usage
:project: progguide
-----------------------
.. doxygenfunction:: lammps_get_mpi_comm
:project: progguide

71
src/info.cpp
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@ -315,41 +315,23 @@ void Info::command(int narg, char **arg)
}
if (flags & MEMORY) {
double meminfo[3];
get_memory_info(meminfo);
fputs("\nMemory allocation information (MPI rank 0):\n\n",out);
double bytes = 0;
bytes += atom->memory_usage();
bytes += neighbor->memory_usage();
bytes += comm->memory_usage();
bytes += update->memory_usage();
bytes += force->memory_usage();
bytes += modify->memory_usage();
for (int i = 0; i < output->ndump; i++)
bytes += output->dump[i]->memory_usage();
double mbytes = bytes/1024.0/1024.0;
fmt::print(out,"Total dynamically allocated memory: {:.4} Mbyte\n",mbytes);
fmt::print(out,"Total dynamically allocated memory: {:.4} Mbyte\n",
meminfo[0]);
#if defined(_WIN32)
HANDLE phandle = GetCurrentProcess();
PROCESS_MEMORY_COUNTERS_EX pmc;
GetProcessMemoryInfo(phandle,(PROCESS_MEMORY_COUNTERS *)&pmc,sizeof(pmc));
fmt::print(out,"Non-shared memory use: {:.4} Mbyte\n",
(double)pmc.PrivateUsage/1048576.0);
fmt::print(out,"Maximum working set size: {:.4} Mbyte\n",
(double)pmc.PeakWorkingSetSize/1048576.0);
fmt::print(out,"Non-shared memory use: {:.4} Mbyte\n",meminfo[1]);
fmt::print(out,"Maximum working set size: {:.4} Mbyte\n",meminfo[2]);
#else
#if defined(__linux__)
struct mallinfo mi;
mi = mallinfo();
fmt::print(out,"Current reserved memory pool size: {:.4} Mbyte\n",
(double)mi.uordblks/1048576.0+(double)mi.hblkhd/1048576.0);
meminfo[1]);
#endif
struct rusage ru;
if (getrusage(RUSAGE_SELF, &ru) == 0) {
fmt::print(out,"Maximum resident set size: {:.4} Mbyte\n",
(double)ru.ru_maxrss/1024.0);
}
fmt::print(out,"Maximum resident set size: {:.4} Mbyte\n",meminfo[2]);
#endif
}
@ -1300,6 +1282,41 @@ std::string Info::get_cxx_info()
/* ---------------------------------------------------------------------- */
void Info::get_memory_info(double *meminfo)
{
double bytes = 0;
bytes += atom->memory_usage();
bytes += neighbor->memory_usage();
bytes += comm->memory_usage();
bytes += update->memory_usage();
bytes += force->memory_usage();
bytes += modify->memory_usage();
for (int i = 0; i < output->ndump; i++)
bytes += output->dump[i]->memory_usage();
meminfo[0] = bytes/1024.0/1024.0;
meminfo[1] = 0;
meminfo[2] = 0;
#if defined(_WIN32)
HANDLE phandle = GetCurrentProcess();
PROCESS_MEMORY_COUNTERS_EX pmc;
GetProcessMemoryInfo(phandle,(PROCESS_MEMORY_COUNTERS *)&pmc,sizeof(pmc));
meminfo[1] = (double)pmc.PrivateUsage/1048576.0;
meminfo[2] = (double)pmc.PeakWorkingSetSize/1048576.0;
#else
#if defined(__linux__)
struct mallinfo mi;
mi = mallinfo();
meminfo[1] = (double)mi.uordblks/1048576.0+(double)mi.hblkhd/1048576.0;
#endif
struct rusage ru;
if (getrusage(RUSAGE_SELF, &ru) == 0)
meminfo[2] = (double)ru.ru_maxrss/1024.0;
#endif
}
/* ---------------------------------------------------------------------- */
char **Info::get_variable_names(int &num) {
num = input->variable->nvar;
return input->variable->names;

1
src/info.h
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@ -52,6 +52,7 @@ class Info : protected Pointers {
static std::string get_mpi_info(int &, int &);
static std::string get_cxx_info();
void get_memory_info(double *);
char **get_variable_names(int &num);
private:

30
src/output.cpp
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@ -21,6 +21,7 @@
#include "error.h"
#include "force.h"
#include "group.h"
#include "info.h"
#include "input.h"
#include "memory.h"
#include "modify.h"
@ -817,28 +818,19 @@ void Output::create_restart(int narg, char **arg)
void Output::memory_usage()
{
double bytes = 0;
bytes += atom->memory_usage();
bytes += neighbor->memory_usage();
bytes += comm->memory_usage();
bytes += update->memory_usage();
bytes += force->memory_usage();
bytes += modify->memory_usage();
for (int i = 0; i < ndump; i++) bytes += dump[i]->memory_usage();
double meminfo[3];
Info info(lmp);
double mbytes = bytes/1024.0/1024.0;
double mbavg,mbmin,mbmax;
info.get_memory_info(meminfo);
double mbytes = meminfo[0];
double mbmin,mbavg,mbmax;
MPI_Reduce(&mbytes,&mbavg,1,MPI_DOUBLE,MPI_SUM,0,world);
MPI_Reduce(&mbytes,&mbmin,1,MPI_DOUBLE,MPI_MIN,0,world);
MPI_Reduce(&mbytes,&mbmax,1,MPI_DOUBLE,MPI_MAX,0,world);
if (comm->me == 0) {
mbavg /= comm->nprocs;
if (screen)
fprintf(screen,"Per MPI rank memory allocation (min/avg/max) = "
"%.4g | %.4g | %.4g Mbytes\n",mbmin,mbavg,mbmax);
if (logfile)
fprintf(logfile,"Per MPI rank memory allocation (min/avg/max) = "
"%.4g | %.4g | %.4g Mbytes\n",mbmin,mbavg,mbmax);
}
if (comm->me == 0)
utils::logmesg(lmp,fmt::format("Per MPI rank memory allocation (min/avg/"
"max) = {:.4} | {:.4} | {:.4} Mbytes\n",
mbmin,mbavg,mbmax));
}