diff --git a/doc/Section_errors.txt b/doc/Section_errors.txt index 95bb3db422..9e1d349aba 100644 --- a/doc/Section_errors.txt +++ b/doc/Section_errors.txt @@ -5780,16 +5780,16 @@ The atom style defined does not have this attribute. :dd The atom style defined does not have this attribute. :dd -{Pair style lj/cut/coul/long/tip4p requires atom IDs} :dt +{Pair style lj/cut/tip4p/long requires atom IDs} :dt There are no atom IDs defined in the system and the TIP4P potential requires them to find O,H atoms with a water molecule. :dd -{Pair style lj/cut/coul/long/tip4p requires atom attribute q} :dt +{Pair style lj/cut/tip4p/long requires atom attribute q} :dt The atom style defined does not have these attributes. :dd -{Pair style lj/cut/coul/long/tip4p requires newton pair on} :dt +{Pair style lj/cut/tip4p/long requires newton pair on} :dt This is because the computation of constraint forces within a water molecule adds forces to atoms owned by other processors. :dd @@ -7246,7 +7246,7 @@ Self-explanatory. :dd Self-explanatory. :dd -{Water H epsilon must be 0.0 for pair style lj/cut/coul/long/tip4p} :dt +{Water H epsilon must be 0.0 for pair style lj/cut/tip4p/long} :dt This is because LAMMPS does not compute the Lennard-Jones interactions with these particles for efficiency reasons. :dd diff --git a/doc/Section_howto.txt b/doc/Section_howto.txt index 00935f3215..044d2c73df 100644 --- a/doc/Section_howto.txt +++ b/doc/Section_howto.txt @@ -493,7 +493,7 @@ angle style of {harmonic} or {charmm} should also be used. A TIP4P model is run with LAMMPS using two commands: -"pair_style lj/cut/coul/long/tip4p"_pair_lj.html +"pair_style lj/cut/tip4p/long"_pair_lj.html "kspace_style pppm/tip4p"_kspace_style.html :ul Note that only a TIP4P model with long-range Coulombics is currently @@ -549,7 +549,7 @@ cutoff + 2*(OM distance), to shrink the size of the neighbor list. This leads to slightly larger cost for the long-range calculation, so you can test the trade-off for your model. The OM distance and the LJ and Coulombic cutoffs are set in the "pair_style -lj/cut/coul/long/tip4p"_pair_lj.html command. +lj/cut/tip4p/long"_pair_lj.html command. Wikipedia also has a nice article on "water models"_http://en.wikipedia.org/wiki/Water_model. diff --git a/doc/kspace_style.txt b/doc/kspace_style.txt index fd6aef3384..5dd816b777 100644 --- a/doc/kspace_style.txt +++ b/doc/kspace_style.txt @@ -120,7 +120,7 @@ or not. Its default value is 1.0e-5. The {pppm/tip4p} style is identical to the {pppm} style except that it adds a charge at the massless 4th site in each TIP4P water molecule. It should be used with "pair styles"_pair_style.html with a -{long/tip4p} in their style name. +{tip4p/long} in their style name. :line diff --git a/doc/pair_coeff.txt b/doc/pair_coeff.txt index 14a00f882e..af739c21d4 100644 --- a/doc/pair_coeff.txt +++ b/doc/pair_coeff.txt @@ -139,7 +139,7 @@ section of "this page"_Section_commands.html#cmd_5. "pair_style lj/cut/coul/cut"_pair_lj.html - LJ with cutoff Coulomb "pair_style lj/cut/coul/debye"_pair_lj.html - LJ with Debye screening added to Coulomb "pair_style lj/cut/coul/long"_pair_lj.html - LJ with long-range Coulomb -"pair_style lj/cut/coul/long/tip4p"_pair_lj.html - LJ with long-range Coulomb for TIP4P water +"pair_style lj/cut/tip4p/long"_pair_lj.html - LJ with long-range Coulomb for TIP4P water "pair_style lj/expand"_pair_lj_expand.html - Lennard-Jones for variable size particles "pair_style lj/gromacs"_pair_gromacs.html - GROMACS-style Lennard-Jones potential "pair_style lj/gromacs/coul/gromacs"_pair_gromacs.html - GROMACS-style LJ and Coulombic potential diff --git a/doc/pair_style.txt b/doc/pair_style.txt index 3e9de618b4..f86b06f57f 100644 --- a/doc/pair_style.txt +++ b/doc/pair_style.txt @@ -141,7 +141,7 @@ section of "this page"_Section_commands.html#cmd_5. "pair_style lj/cut/coul/cut"_pair_lj.html - LJ with cutoff Coulomb "pair_style lj/cut/coul/debye"_pair_lj.html - LJ with Debye screening added to Coulomb "pair_style lj/cut/coul/long"_pair_lj.html - LJ with long-range Coulomb -"pair_style lj/cut/coul/long/tip4p"_pair_lj.html - LJ with long-range Coulomb for TIP4P water +"pair_style lj/cut/tip4p/long"_pair_lj.html - LJ with long-range Coulomb for TIP4P water "pair_style lj/expand"_pair_lj_expand.html - Lennard-Jones for variable size particles "pair_style lj/gromacs"_pair_gromacs.html - GROMACS-style Lennard-Jones potential "pair_style lj/gromacs/coul/gromacs"_pair_gromacs.html - GROMACS-style LJ and Coulombic potential