small doc fixes
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@ -96,7 +96,7 @@ ordered :math:`xx`, :math:`yy`, :math:`zz`, :math:`xy`, :math:`xz`, :math:`yz`.
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The number of atoms contributing to the temperature is assumed to be
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constant for the duration of the run; use the *dynamic* option of the
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:doc:`compute_modify <compute_modify>` command if this is not the case.
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However, in order to get meaningful result, the group ID of this compute should
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However, in order to get meaningful results, the group ID of this compute should
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be all.
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The removal of the cosine-shaped velocity component by this command is
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@ -145,7 +145,10 @@ The seventh element of vector value will be in velocity :doc:`units <units>`.
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Restrictions
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""""""""""""
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This command is only available when LAMMPS was built with the MISC package.
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This compute is part of the MISC package. It is only enabled if LAMMPS
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was built with that package. See the :doc:`Build package
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<Build_package>` page for more info.
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Since this compute depends on :doc:`fix accelerate/cos <fix_accelerate_cos>`
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which can only work for 3d systems, it cannot be used for 2d systems.
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@ -20,7 +20,7 @@ Examples
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.. code-block:: LAMMPS
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fix 1 all accelerate/cos 0.02e-5
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fix 1 all accelerate/cos 2.0e-7
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Description
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"""""""""""
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@ -57,19 +57,18 @@ where :math:`m_i`, :math:`v_{i,x}`, and :math:`z_i` are the mass,
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:math:`x`-component velocity, and :math:`z`-coordinate of a particle,
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respectively.
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The velocity amplitude :math:`V` can be calculated with
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:doc:`compute viscosity/cos <compute_viscosity_cos>`,
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which enables viscosity calculation with periodic perturbation method,
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as described by :ref:`Hess<Hess2>`.
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Because the applied acceleration drives the system away from equilibration,
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the calculated shear viscosity is lower than the intrinsic viscosity
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due to the shear-thinning effect.
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Extrapolation to zero acceleration should generally be performed to
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predict the zero-shear viscosity.
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As the shear stress decreases, the signal-noise ratio decreases rapidly,
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the simulation time must be extended accordingly to get converged result.
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The velocity amplitude :math:`V` can be calculated with :doc:`compute
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viscosity/cos <compute_viscosity_cos>`, which enables viscosity
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calculation with periodic perturbation method, as described by
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:ref:`Hess<Hess2>`. Because the applied acceleration drives the system
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away from equilibration, the calculated shear viscosity is lower than
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the intrinsic viscosity due to the shear-thinning effect. Extrapolation
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to zero acceleration should generally be performed to predict the
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zero-shear viscosity. As the shear stress decreases, the
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signal-to-noise ratio decreases rapidly, and the simulation time must be
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extended accordingly to get converged results.
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In order to get meaningful result, the group ID of this fix should be all.
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In order to get meaningful results, the group ID of this fix should be all.
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----------
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@ -81,12 +80,16 @@ None of the fix_modify options are relevant to this fix.
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No global or per-atom quantities are stored by this fix for access by various
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output commands. No parameter of this fix can be used with the start/stop
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keywords of the run command.
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This fix is not invoked during energy minimization.
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Restrictions
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""""""""""""
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This command is only available when LAMMPS was built with the MISC package.
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This fix is part of the MISC package. It is only enabled if LAMMPS was
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built with that package. See the :doc:`Build package <Build_package>`
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page for more info.
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Since this fix depends on the :math:`z`-coordinate of atoms, it cannot be used
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in 2d simulations.
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@ -1,4 +1,4 @@
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Fix ave/spatial command
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fix ave/spatial command
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=======================
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.. meta::
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@ -1,5 +1,5 @@
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Fix ave/spatial command
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=======================
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fix ave/spatial/sphere command
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==============================
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.. meta::
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:http-equiv=Refresh: 5; url=https://docs.lammps.org/Commands_removed.html#fix-ave-spatial-and-fix-ave-spatial-sphere
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