added atom styles with bonus data, also a few USER packages

src/atom_vec_body.h

@@ -42,49 +42,26 @@ class AtomVecBody : public AtomVec {
   AtomVecBody(class LAMMPS *);
   ~AtomVecBody();
   void process_args(int, char **);
-  void grow(int);
-  void grow_reset();
-  void copy(int, int, int);
-  int pack_comm(int, int *, double *, int, int *);
-  int pack_comm_vel(int, int *, double *, int, int *);
-  int pack_comm_hybrid(int, int *, double *);
-  void unpack_comm(int, int, double *);
-  void unpack_comm_vel(int, int, double *);
-  int unpack_comm_hybrid(int, int, double *);
-  int pack_reverse(int, int, double *);
-  int pack_reverse_hybrid(int, int, double *);
-  void unpack_reverse(int, int *, double *);
-  int unpack_reverse_hybrid(int, int *, double *);
-  int pack_border(int, int *, double *, int, int *);
-  int pack_border_vel(int, int *, double *, int, int *);
-  int pack_border_hybrid(int, int *, double *);
-  void unpack_border(int, int, double *);
-  void unpack_border_vel(int, int, double *);
-  int unpack_border_hybrid(int, int, double *);
-  int pack_exchange(int, double *);
-  int unpack_exchange(double *);
-  int size_restart();
-  int pack_restart(int, double *);
-  int unpack_restart(double *);
-  void create_atom(int, double *);
-  void data_atom(double *, imageint, char **);
-  int data_atom_hybrid(int, char **);
-  void data_vel(int, char **);
-  int data_vel_hybrid(int, char **);
-  void pack_data(double **);
-  int pack_data_hybrid(int, double *);
-  void write_data(FILE *, int, double **);
-  int write_data_hybrid(FILE *, double *);
-  void pack_vel(double **);
-  int pack_vel_hybrid(int, double *);
-  void write_vel(FILE *, int, double **);
-  int write_vel_hybrid(FILE *, double *);
-  bigint memory_usage();
-
-  // manipulate Bonus data structure for extra atom info
 
+  void copy_bonus(int, int, int);
   void clear_bonus();
+  int pack_comm_bonus(int, int *, double *);
+  void unpack_comm_bonus(int, int, double *);
+  int pack_reverse_bonus(int, int, double *);
+  int pack_border_bonus(int, int *, double *);
+  int unpack_border_bonus(int, int, double *);
+  int pack_exchange_bonus(int, double *);
+  int unpack_exchange_bonus(int, double *);
+  int size_restart_bonus();
+  int pack_restart_bonus(int, double *);
+  int unpack_restart_bonus(int, double *);
   void data_body(int, int, int, int *, double *);
+  bigint memory_usage_bonus();
+
+  void create_atom_post(int);
+  void data_atom_post(int);
+  void pack_data_pre(int);
+  void pack_data_post(int);
 
   // methods used by other classes to query/set body info
 
@@ -94,23 +71,16 @@ class AtomVecBody : public AtomVec {
   int nlocal_bonus;
 
  private:
-  tagint *tag;
-  int *type,*mask;
-  imageint *image;
-  double **x,**v,**f;
-  double *radius;
-  double *rmass;
-  double **angmom,**torque;
-  int *body;
-
   int nghost_bonus,nmax_bonus;
-  int intdoubleratio;       // sizeof(double) / sizeof(int)
+  int intdoubleratio;            // sizeof(double) / sizeof(int)
+  int body_flag;
 
   MyPoolChunk<int> *icp;
   MyPoolChunk<double> *dcp;
 
   void grow_bonus();
-  void copy_bonus(int, int);
+  void copy_bonus_all(int, int);
+  // check(int);
 };
 
 }