use math environments to typeset math expressions. make consistent.
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@ -172,10 +172,10 @@ specific details of a simulation. Testing different values is recommended.
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By default, there is no limit on the resulting strain rate in any dimension.
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By default, there is no limit on the resulting strain rate in any dimension.
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A maximum limit can be applied using the :ref:`max/rate <deform_max_rate>`
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A maximum limit can be applied using the :ref:`max/rate <deform_max_rate>`
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option. Akin to :doc:`fix nh <fix_nh>`, pressures in different dimensions
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option. Akin to :doc:`fix npt and nph <fix_nh>`, pressures in different
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can be coupled using the :ref:`couple <deform_couple>` option. This means
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dimensions can be coupled using the :ref:`couple <deform_couple>` option.
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the instantaneous pressure along coupled dimensions are averaged and the box
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This means the instantaneous pressure along coupled dimensions are averaged
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strains identically along the coupled dimensions.
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and the box strains identically along the coupled dimensions.
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The *pressure/mean* style changes a dimension's box length to maintain
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The *pressure/mean* style changes a dimension's box length to maintain
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a constant mean pressure defined as the trace of the pressure tensor.
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a constant mean pressure defined as the trace of the pressure tensor.
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@ -204,7 +204,7 @@ off-diagonal component of the pressure tensor. This option attempts to
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maintain a specified target value using a linear controller where the
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maintain a specified target value using a linear controller where the
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tilt factor T evolves according to the equation
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tilt factor T evolves according to the equation
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.. parsed-literal::
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.. math::
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\frac{d T(t)}{dt} = L(t) k (P - P_t)
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\frac{d T(t)}{dt} = L(t) k (P - P_t)
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@ -225,17 +225,17 @@ the applied strain using the :ref:`max/rate <deform_max_rate>` option.
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The *erate/rescale* style operates similarly to the *erate* style with
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The *erate/rescale* style operates similarly to the *erate* style with
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a specified strain rate in units of 1/time. The difference is that
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a specified strain rate in units of 1/time. The difference is that
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the change in the tilt factor will depend on the current length of
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the change in the tilt factor will depend on the current length of
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the box perpendicular to the shear direction, L, instead of the
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the box perpendicular to the shear direction, *L*, instead of the
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original length, L0. The tilt factor T as a function of time will
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original length, *L0*. The tilt factor T as a function of time will
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change as
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change as
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.. parsed-literal::
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.. math::
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T(t) = T(t-1) + L\*erate\* \Delta t
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T(t) = T(t-1) + L \cdot \mathrm{erate} \cdot \Delta t
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where T(t-1) is the tilt factor on the previous timestep and :math:`\Delta t`
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where T(t-1) is the tilt factor on the previous timestep and
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is the timestep size. This option may be useful in scenarios where
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:math:`\Delta t` is the timestep size. This option may be useful
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L changes in time.
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in scenarios where *L* changes in time.
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----------
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----------
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