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ATC version 2.0, date: Sep1

Browse Source 
git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@10709 f3b2605a-c512-4ea7-a41b-209d697bcdaa
This commit is contained in:
rjones
2013-09-01 08:07:54 +00:00
parent 2b9171177d
commit 5302074b3f
88 changed files with 4300 additions and 4246 deletions
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14
examples/USER/atc/mesh/gaussianIC1d_hex.screen
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@ -1,4 +1,4 @@
LAMMPS (27 Aug 2013)
LAMMPS (30 Aug 2013)
units real
atom_style atomic
@ -85,13 +85,13 @@ Step Temp PotEng AtC[2] AtC[4]
80 17.028137 -6478.0796 0.55504167 20.530699
90 16.865355 -6473.5664 0.41999569 20.372106
100 17.920474 -6481.673 1.6267665 20.219157
Loop time of 4.94615 on 4 procs for 100 steps with 3456 atoms
Loop time of 4.19774 on 4 procs for 100 steps with 3456 atoms
Pair time (%) = 0.930216 (18.8069)
Neigh time (%) = 0.426528 (8.62344)
Comm time (%) = 0.300557 (6.07658)
Outpt time (%) = 0.00703555 (0.142243)
Other time (%) = 3.28181 (66.3509)
Pair time (%) = 0.896439 (21.3553)
Neigh time (%) = 0.408064 (9.72104)
Comm time (%) = 0.161891 (3.85662)
Outpt time (%) = 0.00701588 (0.167135)
Other time (%) = 2.72433 (64.9)
Nlocal: 864 ave 864 max 864 min
Histogram: 4 0 0 0 0 0 0 0 0 0

24
examples/USER/atc/mesh/gaussianIC2d_hex.screen
View File

@ -1,4 +1,4 @@
LAMMPS (27 Aug 2013)
LAMMPS (30 Aug 2013)
units real
atom_style atomic
@ -116,13 +116,13 @@ Step Temp PotEng AtC[2] AtC[4]
380 9.2908989 -2851.9001 20 22.619065
390 9.2908989 -2852.2299 20 22.619065
400 9.2908989 -2852.6005 20 22.619065
Loop time of 18.4704 on 4 procs for 400 steps with 1792 atoms
Loop time of 16.0537 on 4 procs for 400 steps with 1792 atoms
Pair time (%) = 1.07522 (5.82131)
Pair time (%) = 1.06738 (6.64882)
Neigh time (%) = 0 (0)
Comm time (%) = 0.480759 (2.60287)
Outpt time (%) = 0.00380301 (0.0205898)
Other time (%) = 16.9106 (91.5552)
Comm time (%) = 0.113732 (0.708445)
Outpt time (%) = 0.00429314 (0.0267423)
Other time (%) = 14.8683 (92.616)
Nlocal: 448 ave 448 max 448 min
Histogram: 4 0 0 0 0 0 0 0 0 0
@ -264,13 +264,13 @@ Step Temp PotEng AtC[2] AtC[4]
1380 12.444674 -2883.9691 22.539592 22.343613
1390 12.360208 -2883.6693 22.496432 22.342016
1400 12.266237 -2883.307 22.447301 22.340354
Loop time of 109.452 on 4 procs for 1000 steps with 1792 atoms
Loop time of 98.8153 on 4 procs for 1000 steps with 1792 atoms
Pair time (%) = 2.82032 (2.57677)
Neigh time (%) = 0.0123123 (0.0112491)
Comm time (%) = 0.870483 (0.795311)
Outpt time (%) = 1.21121 (1.10661)
Other time (%) = 104.538 (95.5101)
Pair time (%) = 2.6955 (2.72782)
Neigh time (%) = 0.012054 (0.0121985)
Comm time (%) = 0.181319 (0.183493)
Outpt time (%) = 0.986294 (0.998119)
Other time (%) = 94.9401 (96.0784)
Nlocal: 448 ave 448 max 448 min
Histogram: 4 0 0 0 0 0 0 0 0 0

12
examples/USER/atc/mesh/gaussianIC2d_hex20_uniform.screen
View File

@ -1,4 +1,4 @@
LAMMPS (27 Aug 2013)
LAMMPS (30 Aug 2013)
units real
atom_style atomic
@ -84,13 +84,13 @@ Step Temp PotEng AtC[2] AtC[4]
80 10.015134 -3732.7051 20.022115 21.767782
90 10.008795 -3732.612 20.017899 21.778957
100 10.001827 -3732.5177 20.013234 21.790338
Loop time of 15.304 on 4 procs for 100 steps with 2304 atoms
Loop time of 11.401 on 4 procs for 100 steps with 2304 atoms
Pair time (%) = 0.365796 (2.3902)
Pair time (%) = 0.342919 (3.0078)
Neigh time (%) = 0 (0)
Comm time (%) = 0.266705 (1.74272)
Outpt time (%) = 0.134717 (0.880274)
Other time (%) = 14.5368 (94.9868)
Comm time (%) = 0.0145571 (0.127682)
Outpt time (%) = 0.116064 (1.01801)
Other time (%) = 10.9275 (95.8465)
Nlocal: 576 ave 576 max 576 min
Histogram: 4 0 0 0 0 0 0 0 0 0

12
examples/USER/atc/mesh/gaussianIC2d_hex27_uniform.screen
View File

@ -1,4 +1,4 @@
LAMMPS (27 Aug 2013)
LAMMPS (30 Aug 2013)
units real
atom_style atomic
@ -76,13 +76,13 @@ Step Temp PotEng AtC[2] AtC[4]
80 10.020335 -3732.7341 20.045647 21.476176
90 10.015946 -3732.6496 20.047969 21.468622
100 10.011086 -3732.5676 20.049857 21.461569
Loop time of 15.9294 on 4 procs for 100 steps with 2304 atoms
Loop time of 14.5262 on 4 procs for 100 steps with 2304 atoms
Pair time (%) = 0.349922 (2.19671)
Pair time (%) = 0.342811 (2.35995)
Neigh time (%) = 0 (0)
Comm time (%) = 0.0191067 (0.119946)
Outpt time (%) = 0.1896 (1.19025)
Other time (%) = 15.3708 (96.4931)
Comm time (%) = 0.0154111 (0.106092)
Outpt time (%) = 0.190833 (1.31372)
Other time (%) = 13.9771 (96.2202)
Nlocal: 576 ave 576 max 576 min
Histogram: 4 0 0 0 0 0 0 0 0 0

163
examples/USER/atc/mesh/gaussianIC2d_hex_uniform.screen
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@ -1,4 +1,4 @@
LAMMPS (27 Aug 2013)
LAMMPS (30 Aug 2013)
units real
atom_style atomic
@ -35,91 +35,92 @@ fix AtC internal atc two_temperature Ar_ttm.mat
ATC: constructing two_temperature coupling with parameter file Ar_ttm.mat
ATC: version 2.0
ATC: peratom PE compute created with ID: 3
ATC: P1, ERROR: mesh file is of unknown type.
ATC: P2, ERROR: mesh file is of unknown type.
ATC: P3, ERROR: mesh file is of unknown type.
ATC: 2 materials defined from Ar_ttm.mat
terminate called after throwing an instance of ' ATC: 2 materials defined from Ar_ttm.mat
ATC: creating two_temperature extrinsic model
ATC: 2 materials defined from Ar_ttm.mat
#fix_modify AtC mesh read gaussianIC2d_hex_uniform.mesh f f p
fix_modify AtC mesh read gaussianIC2d_hex_uniform.exo f f p
ATC: P0, ERROR: mesh file is of unknown type.
ATC::ATC_Error'
[pharsalus:01254] *** Process received signal ***
[pharsalus:01254] Signal: Aborted (6)
[pharsalus:01254] Signal code: (-6)
[pharsalus:01254] [ 0] /lib64/libpthread.so.0() [0x3e7ce0f500]
[pharsalus:01254] [ 1] /lib64/libc.so.6(gsignal+0x35) [0x3e7c2328a5]
[pharsalus:01254] [ 2] /lib64/libc.so.6(abort+0x175) [0x3e7c234085]
[pharsalus:01254] [ 3] /usr/lib64/libstdc++.so.6(_ZN9__gnu_cxx27__verbose_terminate_handlerEv+0x12d) [0x3e83ebea5d]
[pharsalus:01254] [ 4] /usr/lib64/libstdc++.so.6() [0x3e83ebcbe6]
[pharsalus:01254] [ 5] /usr/lib64/libstdc++.so.6() [0x3e83ebcc13]
[pharsalus:01254] [ 6] /usr/lib64/libstdc++.so.6(__cxa_rethrow+0x46) [0x3e83ebcc96]
[pharsalus:01254] [ 7] ../../../lmp_openmpi(_ZN9LAMMPS_NS6FixATC12modify_paramEiPPc+0x70) [0x697000]
[pharsalus:01254] [ 8] ../../../lmp_openmpi(_ZN9LAMMPS_NS3Fix13modify_paramsEiPPc+0xb9) [0x691659]
[pharsalus:01254] [ 9] ../../../lmp_openmpi(_ZN9LAMMPS_NS5Input15execute_commandEv+0xcab) [0x79fe8b]
[pharsalus:01254] [10] ../../../lmp_openmpi(_ZN9LAMMPS_NS5Input4fileEv+0x63c) [0x7a196c]
[pharsalus:01254] [11] ../../../lmp_openmpi(main+0x49) [0x7af929]
[pharsalus:01254] [12] /lib64/libc.so.6(__libc_start_main+0xfd) [0x3e7c21ecdd]
[pharsalus:01254] [13] ../../../lmp_openmpi() [0x53b429]
[pharsalus:01254] *** End of error message ***
ATC: P3, ERROR: mesh file is of unknown type.
ATC: P1, ERROR: mesh file is of unknown type.
terminate called after throwing an instance of 'ATC::ATC_Errorterminate called after throwing an instance of 'ATC::ATC_Error'
'
[pharsalus:01257] *** Process received signal ***
[pharsalus:01257] Signal: Aborted (6)
[pharsalus:01257] Signal code: (-6)
[pharsalus:01265] *** Process received signal ***
[pharsalus:01265] Signal: Aborted (6)
[pharsalus:01265] Signal code: (-6)
[pharsalus:01265] [ 0] /lib64/libpthread.so.0() [0x3e7ce0f500]
[pharsalus:01265] [ 1] /lib64/libc.so.6(gsignal+0x35) [0x3e7c2328a5]
[pharsalus:01265] [ 2] /lib64/libc.so.6(abort+0x175) [0x3e7c234085]
[pharsalus:01265] [ 3] /usr/lib64/libstdc++.so.6(_ZN9__gnu_cxx27__verbose_terminate_handlerEv+0x12d) [0x3e83ebea5d]
[pharsalus:01265] [ 4] /usr/lib64/libstdc++.so.6() [0x3e83ebcbe6]
[pharsalus:01265] [ 5] /usr/lib64/libstdc++.so.6() [0x3e83ebcc13]
[pharsalus:01265] [ 6] /usr/lib64/libstdc++.so.6(__cxa_rethrow+0x46) [0x3e83ebcc96]
[pharsalus:01265] [ 7] ../../../lmp_openmpi(_ZN9LAMMPS_NS6FixATC12modify_paramEiPPc+0x70) [0x697000]
[pharsalus:01265] [ 8] ../../../lmp_openmpi(_ZN9LAMMPS_NS3Fix13modify_paramsEiPPc+0xb9) [0x691659]
[pharsalus:01265] [ 9] ../../../lmp_openmpi(_ZN9LAMMPS_NS5Input15execute_commandEv+0xcab) [0x79fe8b]
[pharsalus:01265] [10] ../../../lmp_openmpi(_ZN9LAMMPS_NS5Input4fileEv+0x63c) [0x7a196c]
[pharsalus:01265] [11] ../../../lmp_openmpi(main+0x49) [0x7af929]
[pharsalus:01265] [12] /lib64/libc.so.6(__libc_start_main+0xfd) [0x3e7c21ecdd]
[pharsalus:01265] [13] ../../../lmp_openmpi() [0x53b429]
[pharsalus:01265] *** End of error message ***
ATC: P2, ERROR: mesh file is of unknown type.
terminate called after throwing an instance of 'ATC::ATC_Error'
[pharsalus:33367] *** Process received signal ***
[pharsalus:33367] Signal: Aborted (6)
[pharsalus:33367] Signal code: (-6)
terminate called after throwing an instance of 'ATC::ATC_Error'
[pharsalus:33356] *** Process received signal ***
[pharsalus:33356] Signal: Aborted (6)
[pharsalus:33356] Signal code: (-6)
terminate called after throwing an instance of 'ATC::ATC_Error'
[pharsalus:33359] *** Process received signal ***
[pharsalus:33359] Signal: Aborted (6)
[pharsalus:33359] Signal code: (-6)
terminate called after throwing an instance of 'ATC::ATC_Error'
[pharsalus:33363] *** Process received signal ***
[pharsalus:33363] Signal: Aborted (6)
[pharsalus:33363] Signal code: (-6)
[pharsalus:33367] [ 0] /lib64/libpthread.so.0() [0x3e7ce0f500]
[pharsalus:33367] [ 1] /lib64/libc.so.6(gsignal+0x35) [0x3e7c2328a5]
[pharsalus:33367] [ 2] /lib64/libc.so.6(abort+0x175) [0x3e7c234085]
[pharsalus:33367] [ 3] /usr/lib64/libstdc++.so.6(_ZN9__gnu_cxx27__verbose_terminate_handlerEv+0x12d) [0x3e83ebea5d]
[pharsalus:33367] [ 4] /usr/lib64/libstdc++.so.6() [0x3e83ebcbe6]
[pharsalus:33367] [ 5] /usr/lib64/libstdc++.so.6() [0x3e83ebcc13]
[pharsalus:33367] [ 6] /usr/lib64/libstdc++.so.6(__cxa_rethrow+0x46) [0x3e83ebcc96]
[pharsalus:33367] [ 7] ../../../lmp_openmpi(_ZN9LAMMPS_NS6FixATC12modify_paramEiPPc+0x70) [0x694a60]
[pharsalus:33367] [ 8] ../../../lmp_openmpi(_ZN9LAMMPS_NS3Fix13modify_paramsEiPPc+0xb9) [0x6bcc29]
[pharsalus:33367] [ 9] ../../../lmp_openmpi(_ZN9LAMMPS_NS5Input15execute_commandEv+0xcab) [0x79e68b]
[pharsalus:33367] [10] ../../../lmp_openmpi(_ZN9LAMMPS_NS5Input4fileEv+0x63c) [0x7a016c]
[pharsalus:33367] [11] ../../../lmp_openmpi(main+0x49) [0x7ae0f9]
[pharsalus:33367] [12] /lib64/libc.so.6(__libc_start_main+0xfd) [0x3e7c21ecdd]
[pharsalus:33367] [13] ../../../lmp_openmpi() [0x53a009]
[pharsalus:33367] *** End of error message ***
[pharsalus:33356] [ 0] /lib64/libpthread.so.0() [0x3e7ce0f500]
[pharsalus:33356] [ 1] /lib64/libc.so.6(gsignal+0x35) [0x3e7c2328a5]
[pharsalus:33356] [ 2] /lib64/libc.so.6(abort+0x175) [0x3e7c234085]
[pharsalus:33356] [ 3] /usr/lib64/libstdc++.so.6(_ZN9__gnu_cxx27__verbose_terminate_handlerEv+0x12d) [0x3e83ebea5d]
[pharsalus:33356] [ 4] /usr/lib64/libstdc++.so.6() [0x3e83ebcbe6]
[pharsalus:33356] [ 5] /usr/lib64/libstdc++.so.6() [0x3e83ebcc13]
[pharsalus:33356] [ 6] /usr/lib64/libstdc++.so.6(__cxa_rethrow+0x46) [0x3e83ebcc96]
[pharsalus:33356] [ 7] ../../../lmp_openmpi(_ZN9LAMMPS_NS6FixATC12modify_paramEiPPc+0x70) [0x694a60]
[pharsalus:33356] [ 8] ../../../lmp_openmpi(_ZN9LAMMPS_NS3Fix13modify_paramsEiPPc+0xb9) [0x6bcc29]
[pharsalus:33356] [ 9] ../../../lmp_openmpi(_ZN9LAMMPS_NS5Input15execute_commandEv+0xcab) [0x79e68b]
[pharsalus:33356] [10] ../../../lmp_openmpi(_ZN9LAMMPS_NS5Input4fileEv+0x63c) [0x7a016c]
[pharsalus:33356] [11] ../../../lmp_openmpi(main+0x49) [0x7ae0f9]
[pharsalus:33356] [12] /lib64/libc.so.6(__libc_start_main+0xfd) [0x3e7c21ecdd]
[pharsalus:33356] [13] ../../../lmp_openmpi() [0x53a009]
[pharsalus:33356] *** End of error message ***
[pharsalus:33359] [ 0] /lib64/libpthread.so.0() [0x3e7ce0f500]
[pharsalus:33359] [ 1] /lib64/libc.so.6(gsignal+0x35) [0x3e7c2328a5]
[pharsalus:33359] [ 2] /lib64/libc.so.6(abort+0x175) [0x3e7c234085]
[pharsalus:33359] [ 3] /usr/lib64/libstdc++.so.6(_ZN9__gnu_cxx27__verbose_terminate_handlerEv+0x12d) [0x3e83ebea5d]
[pharsalus:33359] [ 4] /usr/lib64/libstdc++.so.6() [0x3e83ebcbe6]
[pharsalus:33359] [ 5] /usr/lib64/libstdc++.so.6() [0x3e83ebcc13]
[pharsalus:33359] [ 6] /usr/lib64/libstdc++.so.6(__cxa_rethrow+0x46) [0x3e83ebcc96]
[pharsalus:33359] [ 7] ../../../lmp_openmpi(_ZN9LAMMPS_NS6FixATC12modify_paramEiPPc+0x70) [0x694a60]
[pharsalus:33359] [ 8] ../../../lmp_openmpi(_ZN9LAMMPS_NS3Fix13modify_paramsEiPPc+0xb9) [0x6bcc29]
[pharsalus:33359] [ 9] ../../../lmp_openmpi(_ZN9LAMMPS_NS5Input15execute_commandEv+0xcab) [0x79e68b]
[pharsalus:33359] [10] ../../../lmp_openmpi(_ZN9LAMMPS_NS5Input4fileEv+0x63c) [0x7a016c]
[pharsalus:33359] [11] ../../../lmp_openmpi(main+0x49) [0x7ae0f9]
[pharsalus:33359] [12] /lib64/libc.so.6(__libc_start_main+0xfd) [0x3e7c21ecdd]
[pharsalus:33359] [13] ../../../lmp_openmpi() [0x53a009]
[pharsalus:33359] *** End of error message ***
[pharsalus:33363] [ 0] /lib64/libpthread.so.0() [0x3e7ce0f500]
[pharsalus:33363] [ 1] /lib64/libc.so.6(gsignal+0x35) [0x3e7c2328a5]
[pharsalus:33363] [ 2] /lib64/libc.so.6(abort+0x175) [0x3e7c234085]
[pharsalus:33363] [ 3] /usr/lib64/libstdc++.so.6(_ZN9__gnu_cxx27__verbose_terminate_handlerEv+0x12d) [0x3e83ebea5d]
[pharsalus:33363] [ 4] /usr/lib64/libstdc++.so.6() [0x3e83ebcbe6]
[pharsalus:33363] [ 5] /usr/lib64/libstdc++.so.6() [0x3e83ebcc13]
[pharsalus:33363] [ 6] /usr/lib64/libstdc++.so.6(__cxa_rethrow+0x46) [0x3e83ebcc96]
[pharsalus:33363] [ 7] ../../../lmp_openmpi(_ZN9LAMMPS_NS6FixATC12modify_paramEiPPc+0x70) [0x694a60]
[pharsalus:33363] [ 8] ../../../lmp_openmpi(_ZN9LAMMPS_NS3Fix13modify_paramsEiPPc+0xb9) [0x6bcc29]
[pharsalus:33363] [ 9] ../../../lmp_openmpi(_ZN9LAMMPS_NS5Input15execute_commandEv+0xcab) [0x79e68b]
[pharsalus:33363] [10] ../../../lmp_openmpi(_ZN9LAMMPS_NS5Input4fileEv+0x63c) [0x7a016c]
[pharsalus:33363] [11] ../../../lmp_openmpi(main+0x49) [0x7ae0f9]
[pharsalus:33363] [12] /lib64/libc.so.6(__libc_start_main+0xfd) [0x3e7c21ecdd]
[pharsalus:33363] [13] ../../../lmp_openmpi() [0x53a009]
[pharsalus:33363] *** End of error message ***
[pharsalus:01262] *** Process received signal ***
[pharsalus:01262] Signal: Aborted (6)
[pharsalus:01262] Signal code: (-6)
[pharsalus:01257] [ 0] /lib64/libpthread.so.0() [0x3e7ce0f500]
[pharsalus:01257] [ 1] /lib64/libc.so.6(gsignal+0x35) [0x3e7c2328a5]
[pharsalus:01257] [ 2] /lib64/libc.so.6(abort+0x175) [0x3e7c234085]
[pharsalus:01257] [ 3] /usr/lib64/libstdc++.so.6(_ZN9__gnu_cxx27__verbose_terminate_handlerEv+0x12d) [0x3e83ebea5d]
[pharsalus:01257] [ 4] /usr/lib64/libstdc++.so.6() [0x3e83ebcbe6]
[pharsalus:01257] [ 5] /usr/lib64/libstdc++.so.6() [0x3e83ebcc13]
[pharsalus:01257] [ 6] /usr/lib64/libstdc++.so.6(__cxa_rethrow+0x46) [0x3e83ebcc96]
[pharsalus:01257] [ 7] ../../../lmp_openmpi(_ZN9LAMMPS_NS6FixATC12modify_paramEiPPc+0x70) [0x697000]
[pharsalus:01257] [ 8] ../../../lmp_openmpi(_ZN9LAMMPS_NS3Fix13modify_paramsEiPPc+0xb9) [0x691659]
[pharsalus:01257] [ 9] ../../../lmp_openmpi(_ZN9LAMMPS_NS5Input15execute_commandEv+0xcab) [0x79fe8b]
[pharsalus:01257] [10] ../../../lmp_openmpi(_ZN9LAMMPS_NS5Input4fileEv+0x63c) [0x7a196c]
[pharsalus:01257] [11] ../../../lmp_openmpi(main+0x49) [0x7af929]
[pharsalus:01257] [12] /lib64/libc.so.6(__libc_start_main+0xfd) [0x3e7c21ecdd]
[pharsalus:01257] [13] ../../../lmp_openmpi() [0x53b429]
[pharsalus:01257] *** End of error message ***
[pharsalus:01262] [ 0] /lib64/libpthread.so.0() [0x3e7ce0f500]
[pharsalus:01262] [ 1] /lib64/libc.so.6(gsignal+0x35) [0x3e7c2328a5]
[pharsalus:01262] [ 2] /lib64/libc.so.6(abort+0x175) [0x3e7c234085]
[pharsalus:01262] [ 3] /usr/lib64/libstdc++.so.6(_ZN9__gnu_cxx27__verbose_terminate_handlerEv+0x12d) [0x3e83ebea5d]
[pharsalus:01262] [ 4] /usr/lib64/libstdc++.so.6() [0x3e83ebcbe6]
[pharsalus:01262] [ 5] /usr/lib64/libstdc++.so.6() [0x3e83ebcc13]
[pharsalus:01262] [ 6] /usr/lib64/libstdc++.so.6(__cxa_rethrow+0x46) [0x3e83ebcc96]
[pharsalus:01262] [ 7] ../../../lmp_openmpi(_ZN9LAMMPS_NS6FixATC12modify_paramEiPPc+0x70) [0x697000]
[pharsalus:01262] [ 8] ../../../lmp_openmpi(_ZN9LAMMPS_NS3Fix13modify_paramsEiPPc+0xb9) [0x691659]
[pharsalus:01262] [ 9] ../../../lmp_openmpi(_ZN9LAMMPS_NS5Input15execute_commandEv+0xcab) [0x79fe8b]
[pharsalus:01262] [10] ../../../lmp_openmpi(_ZN9LAMMPS_NS5Input4fileEv+0x63c) [0x7a196c]
[pharsalus:01262] [11] ../../../lmp_openmpi(main+0x49) [0x7af929]
[pharsalus:01262] [12] /lib64/libc.so.6(__libc_start_main+0xfd) [0x3e7c21ecdd]
[pharsalus:01262] [13] ../../../lmp_openmpi() [0x53b429]
[pharsalus:01262] *** End of error message ***
--------------------------------------------------------------------------
mpirun noticed that process rank 3 with PID 33367 on node pharsalus exited on signal 6 (Aborted).
mpirun noticed that process rank 1 with PID 1257 on node pharsalus exited on signal 6 (Aborted).
--------------------------------------------------------------------------
2 total processes killed (some possibly by mpirun during cleanup)

12
examples/USER/atc/mesh/gaussianIC2d_tet.screen
View File

@ -1,4 +1,4 @@
LAMMPS (27 Aug 2013)
LAMMPS (30 Aug 2013)
units real
atom_style atomic
@ -79,13 +79,13 @@ Step Temp PotEng AtC[2] AtC[4]
80 10.018854 -3732.6191 20.018692 21.657452
90 10.008439 -3732.4929 20.013835 21.653444
100 9.995993 -3732.3576 20.008205 21.649488
Loop time of 41.8226 on 4 procs for 100 steps with 2304 atoms
Loop time of 39.2372 on 4 procs for 100 steps with 2304 atoms
Pair time (%) = 0.376811 (0.900975)
Pair time (%) = 0.346431 (0.882915)
Neigh time (%) = 0 (0)
Comm time (%) = 0.128205 (0.306545)
Outpt time (%) = 0.0721631 (0.172546)
Other time (%) = 41.2454 (98.6199)
Comm time (%) = 0.0216206 (0.0551023)
Outpt time (%) = 0.0730078 (0.186068)
Other time (%) = 38.7961 (98.8759)
Nlocal: 576 ave 576 max 576 min
Histogram: 4 0 0 0 0 0 0 0 0 0

16
examples/USER/atc/mesh/kernel2d_hex.screen
View File

@ -1,4 +1,4 @@
LAMMPS (27 Aug 2013)
LAMMPS (30 Aug 2013)
units real
atom_style atomic
@ -56,15 +56,15 @@ Setting up run ...
Memory usage per processor = 490.313 Mbytes
Step CPU Temp
0 0 0
1 0.0049510002 0
2 0.013290882 0
Loop time of 0.0133031 on 4 procs for 2 steps with 2304 atoms
1 0.0051858425 0
2 0.013777971 0
Loop time of 0.0137943 on 4 procs for 2 steps with 2304 atoms
Pair time (%) = 0.00893497 (67.1646)
Pair time (%) = 0.00913006 (66.1872)
Neigh time (%) = 0 (0)
Comm time (%) = 0.000443518 (3.33395)
Outpt time (%) = 0.00268322 (20.1699)
Other time (%) = 0.00124139 (9.33155)
Comm time (%) = 0.00068748 (4.9838)
Outpt time (%) = 0.00271451 (19.6785)
Other time (%) = 0.00126225 (9.1505)
Nlocal: 576 ave 576 max 576 min
Histogram: 4 0 0 0 0 0 0 0 0 0

16
examples/USER/atc/mesh/kernel2d_tet.screen
View File

@ -1,4 +1,4 @@
LAMMPS (27 Aug 2013)
LAMMPS (30 Aug 2013)
units real
atom_style atomic
@ -52,15 +52,15 @@ Setting up run ...
Memory usage per processor = 603.85 Mbytes
Step CPU Temp
0 0 0
1 0.0049540997 0
2 0.014386177 0
Loop time of 0.0144055 on 4 procs for 2 steps with 2304 atoms
1 0.004981041 0
2 0.014793873 0
Loop time of 0.0148094 on 4 procs for 2 steps with 2304 atoms
Pair time (%) = 0.00892383 (61.9474)
Pair time (%) = 0.00903654 (61.0188)
Neigh time (%) = 0 (0)
Comm time (%) = 0.000519812 (3.60843)
Outpt time (%) = 0.0032984 (22.8968)
Other time (%) = 0.00166345 (11.5473)
Comm time (%) = 0.000729501 (4.92592)
Outpt time (%) = 0.00340539 (22.9948)
Other time (%) = 0.001638 (11.0605)
Nlocal: 576 ave 576 max 576 min
Histogram: 4 0 0 0 0 0 0 0 0 0

16
examples/USER/atc/mesh/mesh2d_tet.screen
View File

@ -1,4 +1,4 @@
LAMMPS (27 Aug 2013)
LAMMPS (30 Aug 2013)
units real
atom_style atomic
@ -53,15 +53,15 @@ Setting up run ...
Memory usage per processor = 11.9239 Mbytes
Step CPU Temp
0 0 0
1 0.0050871372 0
2 0.01465106 0
Loop time of 0.0146735 on 4 procs for 2 steps with 2304 atoms
1 0.00502491 0
2 0.014554977 0
Loop time of 0.0145697 on 4 procs for 2 steps with 2304 atoms
Pair time (%) = 0.00897056 (61.1345)
Pair time (%) = 0.0089379 (61.3458)
Neigh time (%) = 0 (0)
Comm time (%) = 0.00056076 (3.82159)
Outpt time (%) = 0.0033372 (22.7431)
Other time (%) = 0.00180495 (12.3008)
Comm time (%) = 0.000545084 (3.74122)
Outpt time (%) = 0.00334799 (22.9791)
Other time (%) = 0.00173873 (11.9339)
Nlocal: 576 ave 576 max 576 min
Histogram: 4 0 0 0 0 0 0 0 0 0

30
examples/USER/atc/mesh/semicircle.screen
View File

@ -1,4 +1,4 @@
LAMMPS (27 Aug 2013)
LAMMPS (30 Aug 2013)
units real
atom_style atomic
@ -74,12 +74,12 @@ fix_modify AtC boundary ghost
fix_modify AtC mesh read semicircle.mesh f f p
ATC: read 398 nodes
ATC: read 176 HEX8 elements
ATC: P1, writing periodicity corrected mesh: periodic_semicircle.mesh
ATC: P3, writing periodicity corrected mesh: periodic_semicircle.mesh
ATC: condensed 199 periodic nodes in the 3 direction
ATC: created nodeset 1 with 44 nodes
ATC: created nodeset 2 with 4 nodes
ATC: P1, writing periodicity corrected mesh: periodic_semicircle.mesh
ATC: P2, writing periodicity corrected mesh: periodic_semicircle.mesh
ATC: P3, writing periodicity corrected mesh: periodic_semicircle.mesh
ATC: WARNING: mesh is not aligned with the coordinate directions atom-to-element mapping will be expensive
ATC: P0, writing periodicity corrected mesh: periodic_semicircle.mesh
fix_modify AtC mesh nodeset_to_elementset 2 hole min
@ -109,13 +109,13 @@ Step Temp E_pair E_mol TotEng Press
300 10.255763 -5191.6455 0 -5094.8288 -564.44341
400 10.255763 -5185.5031 0 -5088.6864 -611.34498
500 10.255763 -5185.1021 0 -5088.2853 -686.81479
Loop time of 8.85008 on 4 procs for 500 steps with 3168 atoms
Loop time of 9.08358 on 4 procs for 500 steps with 3168 atoms
Pair time (%) = 2.42339 (27.3827)
Neigh time (%) = 0.0542718 (0.613235)
Comm time (%) = 0.651604 (7.36269)
Outpt time (%) = 0.000380278 (0.00429688)
Other time (%) = 5.72043 (64.6371)
Pair time (%) = 2.5019 (27.5431)
Neigh time (%) = 0.0543029 (0.597814)
Comm time (%) = 0.724279 (7.97349)
Outpt time (%) = 0.000456929 (0.00503028)
Other time (%) = 5.80264 (63.8806)
Nlocal: 792 ave 944 max 640 min
Histogram: 2 0 0 0 0 0 0 0 0 2
@ -174,13 +174,13 @@ Step Temp E_pair E_mol TotEng Press
800 10.245262 -5181.8268 0 -5085.1092 -707.19351
900 10.342331 -5183.9012 0 -5086.2673 -667.21622
1000 10.446039 -5184.9612 0 -5086.3482 -647.13367
Loop time of 28.8873 on 4 procs for 1000 steps with 3168 atoms
Loop time of 25.9666 on 4 procs for 1000 steps with 3168 atoms
Pair time (%) = 4.99263 (17.2831)
Neigh time (%) = 0.0909939 (0.314996)
Comm time (%) = 1.76148 (6.09779)
Outpt time (%) = 0.0562053 (0.194568)
Other time (%) = 21.986 (76.1095)
Pair time (%) = 4.93896 (19.0204)
Neigh time (%) = 0.0919983 (0.354294)
Comm time (%) = 1.34195 (5.16797)
Outpt time (%) = 0.0565627 (0.217828)
Other time (%) = 19.5372 (75.2395)
Nlocal: 792 ave 944 max 640 min
Histogram: 2 0 0 0 0 0 0 0 0 2