From 5b47038b14d768b12a791cbb0d3bbdb4ea311c62 Mon Sep 17 00:00:00 2001
From: Oliver Henrich <oliver.henrich@strath.ac.uk>
Date: Fri, 5 Apr 2024 17:52:44 +0100
Subject: [PATCH] Set default trimflag to zero

---
 src/CG-DNA/pair_oxdna2_coaxstk.cpp | 1 +
 src/CG-DNA/pair_oxdna2_dh.cpp      | 1 +
 src/CG-DNA/pair_oxdna_coaxstk.cpp  | 1 +
 src/CG-DNA/pair_oxdna_excv.cpp     | 1 +
 src/CG-DNA/pair_oxdna_hbond.cpp    | 1 +
 src/CG-DNA/pair_oxdna_stk.cpp      | 1 +
 src/CG-DNA/pair_oxdna_xstk.cpp     | 1 +
 src/CG-DNA/pair_oxrna2_hbond.cpp   | 1 +
 src/CG-DNA/pair_oxrna2_stk.cpp     | 1 +
 src/CG-DNA/pair_oxrna2_xstk.cpp    | 1 +
 10 files changed, 10 insertions(+)

diff --git a/src/CG-DNA/pair_oxdna2_coaxstk.cpp b/src/CG-DNA/pair_oxdna2_coaxstk.cpp
index 527020076c..b2666c2f0f 100644
--- a/src/CG-DNA/pair_oxdna2_coaxstk.cpp
+++ b/src/CG-DNA/pair_oxdna2_coaxstk.cpp
@@ -40,6 +40,7 @@ PairOxdna2Coaxstk::PairOxdna2Coaxstk(LAMMPS *lmp) : Pair(lmp)
 {
   single_enable = 0;
   writedata = 1;
+  trim_flag = 0;
 }
 
 /* ---------------------------------------------------------------------- */
diff --git a/src/CG-DNA/pair_oxdna2_dh.cpp b/src/CG-DNA/pair_oxdna2_dh.cpp
index a8114c84d7..d60342e5e2 100644
--- a/src/CG-DNA/pair_oxdna2_dh.cpp
+++ b/src/CG-DNA/pair_oxdna2_dh.cpp
@@ -36,6 +36,7 @@ PairOxdna2Dh::PairOxdna2Dh(LAMMPS *lmp) : Pair(lmp)
 {
   single_enable = 0;
   writedata = 1;
+  trim_flag = 0;
 }
 
 /* ---------------------------------------------------------------------- */
diff --git a/src/CG-DNA/pair_oxdna_coaxstk.cpp b/src/CG-DNA/pair_oxdna_coaxstk.cpp
index 679bfbf18d..1fb0ad9b00 100644
--- a/src/CG-DNA/pair_oxdna_coaxstk.cpp
+++ b/src/CG-DNA/pair_oxdna_coaxstk.cpp
@@ -40,6 +40,7 @@ PairOxdnaCoaxstk::PairOxdnaCoaxstk(LAMMPS *lmp) : Pair(lmp)
 {
   single_enable = 0;
   writedata = 1;
+  trim_flag = 0;
 }
 
 /* ---------------------------------------------------------------------- */
diff --git a/src/CG-DNA/pair_oxdna_excv.cpp b/src/CG-DNA/pair_oxdna_excv.cpp
index 254b8e18d8..60df42404d 100644
--- a/src/CG-DNA/pair_oxdna_excv.cpp
+++ b/src/CG-DNA/pair_oxdna_excv.cpp
@@ -42,6 +42,7 @@ PairOxdnaExcv::PairOxdnaExcv(LAMMPS *lmp) : Pair(lmp)
 
   // set comm size needed by this Pair
   comm_forward = 9;
+  trim_flag = 0;
 }
 
 /* ---------------------------------------------------------------------- */
diff --git a/src/CG-DNA/pair_oxdna_hbond.cpp b/src/CG-DNA/pair_oxdna_hbond.cpp
index 5b121a9113..2beadc2503 100644
--- a/src/CG-DNA/pair_oxdna_hbond.cpp
+++ b/src/CG-DNA/pair_oxdna_hbond.cpp
@@ -38,6 +38,7 @@ PairOxdnaHbond::PairOxdnaHbond(LAMMPS *lmp) : Pair(lmp)
 {
   single_enable = 0;
   writedata = 1;
+  trim_flag = 0;
 
   // sequence-specific base-pairing strength
   // A:0 C:1 G:2 T:3, 5'- [i][j] -3'
diff --git a/src/CG-DNA/pair_oxdna_stk.cpp b/src/CG-DNA/pair_oxdna_stk.cpp
index 1ef779dbd9..cf20d527fe 100644
--- a/src/CG-DNA/pair_oxdna_stk.cpp
+++ b/src/CG-DNA/pair_oxdna_stk.cpp
@@ -39,6 +39,7 @@ PairOxdnaStk::PairOxdnaStk(LAMMPS *lmp) : Pair(lmp)
 {
   single_enable = 0;
   writedata = 1;
+  trim_flag = 0;
 
   // sequence-specific stacking strength
   // A:0 C:1 G:2 T:3, 3'- [i][j] -5'
diff --git a/src/CG-DNA/pair_oxdna_xstk.cpp b/src/CG-DNA/pair_oxdna_xstk.cpp
index 6ef6091889..1eb7caf23a 100644
--- a/src/CG-DNA/pair_oxdna_xstk.cpp
+++ b/src/CG-DNA/pair_oxdna_xstk.cpp
@@ -40,6 +40,7 @@ PairOxdnaXstk::PairOxdnaXstk(LAMMPS *lmp) : Pair(lmp)
 {
   single_enable = 0;
   writedata = 1;
+  trim_flag = 0;
 }
 
 /* ---------------------------------------------------------------------- */
diff --git a/src/CG-DNA/pair_oxrna2_hbond.cpp b/src/CG-DNA/pair_oxrna2_hbond.cpp
index 14ecc6c659..0c4ffcb4f7 100644
--- a/src/CG-DNA/pair_oxrna2_hbond.cpp
+++ b/src/CG-DNA/pair_oxrna2_hbond.cpp
@@ -24,6 +24,7 @@ PairOxrna2Hbond::PairOxrna2Hbond(LAMMPS *lmp) : PairOxdnaHbond(lmp)
 {
   single_enable = 0;
   writedata = 1;
+  trim_flag = 0;
 
   // sequence-specific base-pairing strength
   // A:0 C:1 G:2 U:3, 5'- [i][j] -3'
diff --git a/src/CG-DNA/pair_oxrna2_stk.cpp b/src/CG-DNA/pair_oxrna2_stk.cpp
index f56aa572e8..8c5c9c22f5 100644
--- a/src/CG-DNA/pair_oxrna2_stk.cpp
+++ b/src/CG-DNA/pair_oxrna2_stk.cpp
@@ -41,6 +41,7 @@ PairOxrna2Stk::PairOxrna2Stk(LAMMPS *lmp) : Pair(lmp)
 {
   single_enable = 0;
   writedata = 1;
+  trim_flag = 0;
 
   // sequence-specific stacking strength
   // A:0 C:1 G:2 U:3, 3'- [i][j] -5'
diff --git a/src/CG-DNA/pair_oxrna2_xstk.cpp b/src/CG-DNA/pair_oxrna2_xstk.cpp
index e28b6573bf..8a5fa1b1c9 100644
--- a/src/CG-DNA/pair_oxrna2_xstk.cpp
+++ b/src/CG-DNA/pair_oxrna2_xstk.cpp
@@ -40,6 +40,7 @@ PairOxrna2Xstk::PairOxrna2Xstk(LAMMPS *lmp) : Pair(lmp)
 {
   single_enable = 0;
   writedata = 1;
+  trim_flag = 0;
 }
 
 /* ---------------------------------------------------------------------- */